Examples with DashboardFactory gov.nih.nci.ctd2.dashboard.model.DashboardFactory used on opensource projects

Example 1 with DashboardFactory

use of gov.nih.nci.ctd2.dashboard.model.DashboardFactory in project nci-ctd2-dashboard by CBIIT.

the class SampleImporter method run.

@Override
public void run() {
    DashboardFactory dashboardFactory = getDashboardFactory();
    DashboardDao dashboardDao = getDashboardDao();
    Synonym synonym = dashboardFactory.create(Synonym.class);
    synonym.setDisplayName("S1");
    Synonym synonym2 = dashboardFactory.create(Synonym.class);
    synonym.setDisplayName("S2");
    Synonym synonym3 = dashboardFactory.create(Synonym.class);
    synonym3.setDisplayName("S3");
    // Save with id
    Gene gene = dashboardFactory.create(Gene.class);
    gene.setDisplayName("G1");
    gene.setEntrezGeneId("E1");
    gene.getSynonyms().add(synonym);
    gene.getSynonyms().add(synonym2);
    dashboardDao.save(gene);
    // save without id
    Gene gene2 = dashboardFactory.create(Gene.class);
    gene2.setEntrezGeneId("E2");
    gene.setDisplayName("G2");
    dashboardDao.save(gene2);
    Transcript transcript = dashboardFactory.create(Transcript.class);
    transcript.setGene(gene2);
    transcript.setRefseqId("NM_21431");
    gene.setDisplayName("T1");
    dashboardDao.save(transcript);
    Protein protein = dashboardFactory.create(Protein.class);
    protein.getTranscripts().add(transcript);
    protein.setUniprotId("1000");
    protein.setDisplayName("P1");
    dashboardDao.save(protein);
    AnimalModel animalModel = dashboardFactory.create(AnimalModel.class);
    animalModel.getSynonyms().add(synonym3);
    animalModel.setDisplayName("MM1");
    dashboardDao.save(animalModel);
    UrlEvidence urlEvidence = dashboardFactory.create(UrlEvidence.class);
    urlEvidence.setUrl("http://ctd2.nci.nih.gov/");
    LabelEvidence labelEvidence = dashboardFactory.create(LabelEvidence.class);
    labelEvidence.setDisplayName("L1");
    log.info("Imported " + dashboardDao.findEntities(DashboardEntity.class).size() + " entities.");
}