Examples with MatrixDense gov.sandia.n2a.linear.MatrixDense used on opensource projects

Example 1 with MatrixDense

use of gov.sandia.n2a.linear.MatrixDense in project n2a by frothga.

the class OptimizerLM method step.

public boolean step() {
    if (iteration == -2) {
        iteration = -1;
        return true;
    }
    if (// Collect results of first job. This establishes number of rows in Jacobian.
    iteration == -1) {
        OutputParser.Column series = getSeries(baseIndex - 1);
        int m = series.startRow + series.values.size();
        y = new MatrixDense(m, 1);
        for (int r = 0; r < m; r++) y.set(r, series.get(r));
        ynorm = y.norm(2);
        iteration = 0;
        // Collect the base sample. Note that in subsequent iterations, the base sample will come from the last step of lmpar.
        sample = -1;
        return true;
    }
    if (iteration > maxIterations)
        return false;
    sample++;
    int n = variables.size();
    // Collect remaining samples needed to build Jacobian.
    if (sample < n)
        return true;
    // If all samples have completed, build Jacobian.
    int m = y.rows();
    if (// Only done once per iteration.
    J == null) {
        J = new MatrixDense(m, n);
        for (int c = 0; c < n; c++) {
            OutputParser.Column series = getSeries(baseIndex + c);
            double h = H.get(c);
            double norm = 0;
            for (int r = 0; r < m; r++) {
                double value = (series.get(r) - y.get(r)) / h;
                J.set(r, c, value);
                norm += value * value;
            }
            Jnorms.set(c, Math.sqrt(norm));
        }
        if (iteration == 0) {
            // Scale according to the norms of the columns of the initial Jacobian.
            for (int j = 0; j < n; j++) {
                double scale = Jnorms.get(j);
                if (scale == 0)
                    scale = 1;
                scales.set(j, scale);
            }
            xnorm = ((MatrixDense) x.multiplyElementwise(scales)).norm(2);
            if (xnorm == 0)
                delta = 1;
            else
                delta = xnorm;
        }
    }
    // Factorize J
    FactorQR qr = new FactorQR(J);
    MatrixDense Qy = qr.getQ().transpose().multiply(y);
    // Exact convergence (unlikely).
    if (ynorm == 0)
        return false;
    double gnorm = 0;
    for (int j = 0; j < n; j++) {
        double jnorm = Jnorms.get(j);
        if (jnorm == 0)
            continue;
        // equivalent to ~J * y using the original J.  (That is, ~R * ~Q * y, where J = QR)
        double temp = J.getColumn(j).dot(Qy);
        // infinity norm of g = ~J * y / |y| with some additional scaling
        gnorm = Math.max(gnorm, Math.abs(temp / (ynorm * jnorm)));
    }
    // Gradient has gotten too small to follow.
    if (gnorm <= toleranceG)
        return false;
    // rescale if necessary
    for (int j = 0; j < n; j++) scales.set(j, Math.max(scales.get(j), Jnorms.get(j)));
    // Inner loop of algorithm
    // Search over possible step sizes until we find one that gives acceptable improvement
    // STOPPED HERE --------------------------------------
    iteration++;
    return true;
}

Example 2 with MatrixDense

use of gov.sandia.n2a.linear.MatrixDense in project n2a by frothga.

the class Scalar method EQ.

public Type EQ(Type that) throws EvaluationException {
    if (that instanceof Scalar)
        return new Scalar((value == ((Scalar) that).value) ? 1 : 0);
    if (that instanceof Matrix) {
        Matrix B = (Matrix) that;
        int w = B.columns();
        int h = B.rows();
        MatrixDense result = new MatrixDense(h, w);
        for (int c = 0; c < w; c++) {
            for (int r = 0; r < h; r++) {
                result.set(r, c, (value == B.get(r, c)) ? 1 : 0);
            }
        }
        return result;
    }
    throw new EvaluationException("type mismatch");
}

Example 3 with MatrixDense

use of gov.sandia.n2a.linear.MatrixDense in project n2a by frothga.

the class Scalar method modulo.

public Type modulo(Type that) throws EvaluationException {
    if (that instanceof Scalar) {
        double b = ((Scalar) that).value;
        return new Scalar(value - Math.floor(value / b) * b);
    }
    if (that instanceof Matrix) {
        Matrix B = (Matrix) that;
        int w = B.columns();
        int h = B.rows();
        MatrixDense result = new MatrixDense(h, w);
        for (int c = 0; c < w; c++) {
            for (int r = 0; r < h; r++) {
                double b = B.get(r, c);
                result.set(r, c, value - Math.floor(value / b) * b);
            }
        }
        return result;
    }
    throw new EvaluationException("type mismatch");
}

Example 4 with MatrixDense

use of gov.sandia.n2a.linear.MatrixDense in project n2a by frothga.

the class Scalar method LT.

public Type LT(Type that) throws EvaluationException {
    if (that instanceof Scalar)
        return new Scalar((value < ((Scalar) that).value) ? 1 : 0);
    if (that instanceof Matrix) {
        Matrix B = (Matrix) that;
        int w = B.columns();
        int h = B.rows();
        MatrixDense result = new MatrixDense(h, w);
        for (int c = 0; c < w; c++) {
            for (int r = 0; r < h; r++) {
                result.set(r, c, (value < B.get(r, c)) ? 1 : 0);
            }
        }
        return result;
    }
    throw new EvaluationException("type mismatch");
}

Example 5 with MatrixDense

use of gov.sandia.n2a.linear.MatrixDense in project n2a by frothga.

the class Scalar method GE.

public Type GE(Type that) throws EvaluationException {
    if (that instanceof Scalar)
        return new Scalar((value >= ((Scalar) that).value) ? 1 : 0);
    if (that instanceof Matrix) {
        Matrix B = (Matrix) that;
        int w = B.columns();
        int h = B.rows();
        MatrixDense result = new MatrixDense(h, w);
        for (int c = 0; c < w; c++) {
            for (int r = 0; r < h; r++) {
                result.set(r, c, (value >= B.get(r, c)) ? 1 : 0);
            }
        }
        return result;
    }
    throw new EvaluationException("type mismatch");
}