Examples with OpenDialog ij.io.OpenDialog used on opensource projects

Example 31 with OpenDialog

use of ij.io.OpenDialog in project GDSC-SMLM by aherbert.

the class FilterAnalysis method readFilterSets.

@SuppressWarnings("unchecked")
private static List<FilterSet> readFilterSets() {
    final GUIFilterSettings.Builder filterSettings = SettingsManager.readGuiFilterSettings(0).toBuilder();
    final String[] path = ImageJUtils.decodePath(filterSettings.getFilterSetFilename());
    final OpenDialog chooser = new OpenDialog("Filter_File", path[0], path[1]);
    if (chooser.getFileName() != null) {
        IJ.showStatus("Reading filters ...");
        filterSettings.setFilterSetFilename(chooser.getDirectory() + chooser.getFileName());
        try (BufferedReader input = Files.newBufferedReader(Paths.get(filterSettings.getFilterSetFilename()))) {
            // Use the instance so we can catch the exception
            final Object o = FilterXStreamUtils.getXStreamInstance().fromXML(input);
            if (o instanceof List<?>) {
                SettingsManager.writeSettings(filterSettings.build());
                return (List<FilterSet>) o;
            }
            IJ.log("No filter sets defined in the specified file: " + filterSettings.getFilterSetFilename());
        } catch (final Exception ex) {
            IJ.log("Unable to load the filter sets from file: " + ex.getMessage());
        } finally {
            IJ.showStatus("");
        }
    }
    return Collections.emptyList();
}

Example 32 with OpenDialog

use of ij.io.OpenDialog in project GDSC-SMLM by aherbert.

the class FilterAnalysis method saveFilterSets.

private static void saveFilterSets(List<FilterSet> filterSets) {
    final GUIFilterSettings.Builder filterSettings = SettingsManager.readGuiFilterSettings(0).toBuilder();
    final String[] path = ImageJUtils.decodePath(filterSettings.getFilterSetFilename());
    final OpenDialog chooser = new OpenDialog("Filter_File", path[0], path[1]);
    if (chooser.getFileName() != null) {
        filterSettings.setFilterSetFilename(chooser.getDirectory() + chooser.getFileName());
        try (BufferedWriter out = Files.newBufferedWriter(Paths.get(filterSettings.getFilterSetFilename()))) {
            // Use the instance so we can catch the exception
            FilterXStreamUtils.getXStreamInstance().toXML(filterSets, out);
            SettingsManager.writeSettings(filterSettings.build());
        } catch (final Exception ex) {
            IJ.log("Unable to save the filter sets to file: " + ex.getMessage());
        }
    }
}

Example 33 with OpenDialog

use of ij.io.OpenDialog in project GDSC-SMLM by aherbert.

the class DriftCalculator method getDriftFilename.

private boolean getDriftFilename() {
    final String[] path = ImageJUtils.decodePath(settings.driftFilename);
    final OpenDialog chooser = new OpenDialog("Drift_file", path[0], path[1]);
    if (chooser.getFileName() == null) {
        return false;
    }
    settings.driftFilename = chooser.getDirectory() + chooser.getFileName();
    FileUtils.replaceExtension(settings.driftFilename, "tsv");
    return true;
}

Example 34 with OpenDialog

use of ij.io.OpenDialog in project GDSC-SMLM by aherbert.

the class LoadLocalisations method run.

@Override
public void run(String arg) {
    SmlmUsageTracker.recordPlugin(this.getClass(), arg);
    final LoadLocalisationsSettings.Builder settings = SettingsManager.readLoadLocalisationsSettings(0).toBuilder();
    final String[] path = ImageJUtils.decodePath(settings.getLocalisationsFilename());
    final OpenDialog chooser = new OpenDialog("Localisations_File", path[0], path[1]);
    if (chooser.getFileName() == null) {
        return;
    }
    settings.setLocalisationsFilename(chooser.getDirectory() + chooser.getFileName());
    final LocalisationList localisations = loadLocalisations(settings);
    SettingsManager.writeSettings(settings.build());
    if (localisations == null) {
        // Cancelled
        return;
    }
    if (localisations.isEmpty()) {
        IJ.error(TITLE, "No localisations could be loaded");
        return;
    }
    final MemoryPeakResults results = localisations.toPeakResults(settings.getName());
    // Create the in-memory results
    if (results.size() > 0) {
        MemoryPeakResults.addResults(results);
    }
    final String msg = "Loaded " + TextUtils.pleural(results.size(), "localisation");
    IJ.showStatus(msg);
    ImageJUtils.log(msg);
}