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Example 11 with LayerSet

use of ini.trakem2.display.LayerSet in project TrakEM2 by trakem2.

the class Display method getPatchStacks.

private static List<Patch> getPatchStacks(final LayerSet ls) {
    final HashSet<Patch> stacks = new HashSet<Patch>();
    for (final Patch pa : ls.getAll(Patch.class)) {
        if (stacks.contains(pa))
            continue;
        final PatchStack ps = pa.makePatchStack();
        if (1 == ps.getNSlices())
            continue;
        stacks.add(ps.getPatch(0));
    }
    return new ArrayList<Patch>(stacks);
}
Also used : PatchStack(ini.trakem2.imaging.PatchStack) ArrayList(java.util.ArrayList) HashSet(java.util.HashSet)

Example 12 with LayerSet

use of ini.trakem2.display.LayerSet in project TrakEM2 by trakem2.

the class Display method addAreaTreeAreasMenu.

private void addAreaTreeAreasMenu(final JPopupMenu popup, final AreaTree atree) {
    final ActionListener listener = new ActionListener() {

        private final Node<?> findNearestNode() {
            final Layer la = getLayer();
            final Point p = canvas.consumeLastPopupPoint();
            final Node<?> lv = atree.getLastVisited();
            boolean use_last_visited = false;
            if (null != lv) {
                final float[] xy = new float[] { lv.x, lv.y };
                atree.getAffineTransform().transform(xy, 0, xy, 0, 1);
                use_last_visited = lv.getLayer() == la && canvas.getSrcRect().contains((int) xy[0], (int) xy[1]);
            }
            // if no node lays near the clicked point.
            return atree.findNodeNear(p.x, p.y, la, canvas, use_last_visited);
        }

        @Override
        public void actionPerformed(final ActionEvent ae) {
            final String command = ae.getActionCommand();
            final LayerSet ls = atree.getLayerSet();
            Bureaucrat.createAndStart(new Worker.Task(command) {

                @Override
                public void exec() {
                    final Node<?> nd = findNearestNode();
                    if (null == nd) {
                        Utils.log("No node found in the field of view!");
                        return;
                    }
                    if (command.equals("Copy area")) {
                        final Area area = (Area) nd.getData();
                        if (null == area)
                            return;
                        DisplayCanvas.setCopyBuffer(atree.getClass(), area.createTransformedArea(atree.getAffineTransform()));
                    } else if (command.equals("Paste area")) {
                        final Area wa = (Area) DisplayCanvas.getCopyBuffer(atree.getClass());
                        if (null == wa)
                            return;
                        try {
                            getLayerSet().addDataEditStep(atree);
                            atree.addWorldAreaTo(nd, wa);
                            atree.calculateBoundingBox(nd.getLayer());
                            getLayerSet().addDataEditStep(atree);
                        } catch (final Exception e) {
                            IJError.print(e);
                            getLayerSet().removeLastUndoStep();
                        }
                    } else if (command.equals("Interpolate gaps towards parent (node-centric)")) {
                        interpolate(nd, true);
                    } else if (command.equals("Interpolate gaps towards parent (absolute)")) {
                        interpolate(nd, false);
                    } else if (command.equals("Interpolate all gaps")) {
                        final GenericDialog gd = new GenericDialog("Interpolate");
                        final String[] a = new String[] { "node-centric", "absolute" };
                        gd.addChoice("Mode", a, a[0]);
                        gd.addCheckbox("Always use distance map", project.getBooleanProperty(AreaUtils.always_interpolate_areas_with_distance_map));
                        final String[] b = new String[] { "All selected AreaTrees", "Active AreaTree" };
                        gd.addChoice("Process", b, b[0]);
                        gd.showDialog();
                        if (gd.wasCanceled())
                            return;
                        final boolean node_centric = 0 == gd.getNextChoiceIndex();
                        final boolean use_distance_map = gd.getNextBoolean();
                        final boolean all = 0 == gd.getNextChoiceIndex();
                        final Set<Displayable> s = new HashSet<Displayable>();
                        if (all)
                            s.addAll(selection.get(AreaTree.class));
                        else
                            s.add(atree);
                        // Store current state for undo
                        ls.addDataEditStep(s);
                        try {
                            for (final Displayable d : s) {
                                ((AreaTree) d).interpolateAllGaps(node_centric, use_distance_map);
                            }
                            ls.addDataEditStep(s);
                        } catch (final Exception e) {
                            IJError.print(e);
                            ls.undoOneStep();
                        }
                        Display.repaint();
                    }
                }

                private final void interpolate(final Node<?> nd, final boolean node_centric) {
                    if (null == nd.getDataCopy() || ((Area) nd.getData()).isEmpty()) {
                        Utils.log("Can't interpolate: node lacks an area!");
                        return;
                    }
                    ls.addDataEditStep(atree);
                    try {
                        if (atree.interpolateTowardsParent((AreaTree.AreaNode) nd, node_centric, project.getBooleanProperty(AreaUtils.always_interpolate_areas_with_distance_map))) {
                            ls.addDataEditStep(atree);
                        } else {
                            Utils.log("Nothing to interpolate: the parent node already has an area.");
                            ls.removeLastUndoStep();
                        }
                    } catch (final Exception e) {
                        IJError.print(e);
                        ls.undoOneStep();
                    }
                    Display.repaint();
                }
            }, atree.getProject());
        }
    };
    final JMenu interpolate = new JMenu("Areas");
    JMenuItem item = new JMenuItem("Interpolate gaps towards parent (node-centric)");
    item.addActionListener(listener);
    interpolate.add(item);
    item = new JMenuItem("Interpolate gaps towards parent (absolute)");
    item.addActionListener(listener);
    interpolate.add(item);
    item = new JMenuItem("Interpolate all gaps");
    item.addActionListener(listener);
    interpolate.add(item);
    item = new JMenuItem("Area interpolation options...");
    item.addActionListener(Display.this);
    interpolate.add(item);
    interpolate.addSeparator();
    item = new JMenuItem("Copy area");
    item.addActionListener(listener);
    interpolate.add(item);
    item.setAccelerator(KeyStroke.getKeyStroke(KeyEvent.VK_C, 0, true));
    item = new JMenuItem("Paste area");
    item.addActionListener(listener);
    interpolate.add(item);
    item.setAccelerator(KeyStroke.getKeyStroke(KeyEvent.VK_V, 0, true));
    item.setEnabled(null != DisplayCanvas.getCopyBuffer(active.getClass()));
    popup.add(interpolate);
}
Also used : Set(java.util.Set) HashSet(java.util.HashSet) ActionEvent(java.awt.event.ActionEvent) Point(java.awt.Point) NoninvertibleTransformException(java.awt.geom.NoninvertibleTransformException) Area(java.awt.geom.Area) ActionListener(java.awt.event.ActionListener) GenericDialog(ij.gui.GenericDialog) Worker(ini.trakem2.utils.Worker) JMenuItem(javax.swing.JMenuItem) JMenu(javax.swing.JMenu)

Example 13 with LayerSet

use of ini.trakem2.display.LayerSet in project TrakEM2 by trakem2.

the class Display method selectTab.

/**
 * Select the proper tab, and also scroll it to show the given Displayable -unless it's a LayerSet, and unless the proper tab is already showing.
 */
private void selectTab(final Displayable displ) {
    Method method = null;
    try {
        if (!(displ instanceof LayerSet)) {
            method = Display.class.getDeclaredMethod("selectTab", new Class[] { displ.getClass() });
        }
    } catch (final Exception e) {
        IJError.print(e);
    }
    if (null != method) {
        final Method me = method;
        dispatcher.exec(new Runnable() {

            @Override
            public void run() {
                try {
                    me.setAccessible(true);
                    me.invoke(Display.this, new Object[] { displ });
                } catch (final Exception e) {
                    IJError.print(e);
                }
            }
        });
    }
}
Also used : DBObject(ini.trakem2.persistence.DBObject) Method(java.lang.reflect.Method) NoninvertibleTransformException(java.awt.geom.NoninvertibleTransformException)

Example 14 with LayerSet

use of ini.trakem2.display.LayerSet in project TrakEM2 by trakem2.

the class Display method makeGUI.

private void makeGUI(final Layer layer, final Object[] props) {
    // gather properties
    final Point p;
    double mag = 1.0D;
    Rectangle srcRect = null;
    if (null != props) {
        p = (Point) props[0];
        mag = ((Double) props[1]).doubleValue();
        srcRect = (Rectangle) props[2];
    } else {
        p = null;
    }
    // transparency slider
    this.transp_slider = new JSlider(javax.swing.SwingConstants.HORIZONTAL, 0, 100, 100);
    this.transp_slider.setBackground(Color.white);
    this.transp_slider.setMinimumSize(new Dimension(250, 20));
    this.transp_slider.setMaximumSize(new Dimension(250, 20));
    this.transp_slider.setPreferredSize(new Dimension(250, 20));
    final TransparencySliderListener tsl = new TransparencySliderListener();
    this.transp_slider.addChangeListener(tsl);
    this.transp_slider.addMouseListener(tsl);
    for (final KeyListener kl : this.transp_slider.getKeyListeners()) {
        this.transp_slider.removeKeyListener(kl);
    }
    // Tabbed pane on the left
    this.tabs = new JTabbedPane();
    this.tabs.setMinimumSize(new Dimension(250, 300));
    this.tabs.setBackground(Color.white);
    this.tabs.addChangeListener(tabs_listener);
    // Tab 1: Patches
    this.panel_patches = new RollingPanel(this, Patch.class);
    this.addTab("Patches", panel_patches);
    // Tab 2: Profiles
    this.panel_profiles = new RollingPanel(this, Profile.class);
    this.addTab("Profiles", panel_profiles);
    // Tab 3: ZDisplayables
    this.panel_zdispl = new RollingPanel(this, ZDisplayable.class);
    this.addTab("Z space", panel_zdispl);
    // Tab 4: channels
    this.panel_channels = makeTabPanel();
    this.scroll_channels = makeScrollPane(panel_channels);
    this.channels = new Channel[4];
    this.channels[0] = new Channel(this, Channel.MONO);
    this.channels[1] = new Channel(this, Channel.RED);
    this.channels[2] = new Channel(this, Channel.GREEN);
    this.channels[3] = new Channel(this, Channel.BLUE);
    // this.panel_channels.add(this.channels[0]);
    addGBRow(this.panel_channels, this.channels[1], null);
    addGBRow(this.panel_channels, this.channels[2], this.channels[1]);
    addGBRow(this.panel_channels, this.channels[3], this.channels[2]);
    this.addTab("Opacity", scroll_channels);
    // Tab 5: labels
    this.panel_labels = new RollingPanel(this, DLabel.class);
    this.addTab("Labels", panel_labels);
    // Tab 6: layers
    this.panel_layers = makeTabPanel();
    this.scroll_layers = makeScrollPane(panel_layers);
    recreateLayerPanels(layer);
    this.scroll_layers.addMouseWheelListener(canvas);
    this.addTab("Layers", scroll_layers);
    // Tab 7: tool options
    // empty
    this.tool_options = new OptionPanel();
    this.scroll_options = makeScrollPane(this.tool_options);
    this.scroll_options.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
    this.addTab("Tool options", this.scroll_options);
    // Tab 8: annotations
    this.annot_editor = new JEditorPane();
    // by default, nothing is selected
    this.annot_editor.setEnabled(false);
    this.annot_editor.setMinimumSize(new Dimension(200, 50));
    this.annot_label = new JLabel("(No selected object)");
    this.annot_panel = makeAnnotationsPanel(this.annot_editor, this.annot_label);
    this.addTab("Annotations", this.annot_panel);
    // Tab 9: filter options
    this.filter_options = createFilterOptionPanel();
    this.scroll_filter_options = makeScrollPane(this.filter_options);
    this.scroll_filter_options.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
    this.addTab("Live filter", this.scroll_filter_options);
    this.ht_tabs = new Hashtable<Class<?>, RollingPanel>();
    this.ht_tabs.put(Patch.class, panel_patches);
    this.ht_tabs.put(Profile.class, panel_profiles);
    this.ht_tabs.put(ZDisplayable.class, panel_zdispl);
    this.ht_tabs.put(AreaList.class, panel_zdispl);
    this.ht_tabs.put(Pipe.class, panel_zdispl);
    this.ht_tabs.put(Polyline.class, panel_zdispl);
    this.ht_tabs.put(Treeline.class, panel_zdispl);
    this.ht_tabs.put(AreaTree.class, panel_zdispl);
    this.ht_tabs.put(Connector.class, panel_zdispl);
    this.ht_tabs.put(Ball.class, panel_zdispl);
    this.ht_tabs.put(Dissector.class, panel_zdispl);
    this.ht_tabs.put(DLabel.class, panel_labels);
    this.ht_tabs.put(Stack.class, panel_zdispl);
    // channels not included
    // layers not included
    // tools not included
    // annotations not included
    // Navigator
    this.navigator = new DisplayNavigator(this, layer.getLayerWidth(), layer.getLayerHeight());
    // Layer scroller (to scroll slices)
    int extent = (int) (250.0 / layer.getParent().size());
    if (extent < 10)
        extent = 10;
    this.scroller = new JScrollBar(JScrollBar.HORIZONTAL);
    this.scroller.setModel(new ScrollerModel(layer));
    updateLayerScroller(layer);
    this.scroller.addAdjustmentListener(scroller_listener);
    // LAYOUT
    final GridBagLayout layout = new GridBagLayout();
    final GridBagConstraints c = new GridBagConstraints();
    c.anchor = GridBagConstraints.NORTHWEST;
    c.fill = GridBagConstraints.NONE;
    c.weightx = 0;
    c.weighty = 0;
    c.gridx = 0;
    c.gridy = 0;
    c.ipadx = 0;
    c.ipady = 0;
    c.gridwidth = 1;
    c.gridheight = 1;
    Display.this.all = new JPanel();
    all.setBackground(Color.white);
    all.setLayout(layout);
    c.insets = new Insets(0, 0, 0, 5);
    // 1
    // fixed dimensions
    toolbar_panel = new ToolbarPanel();
    layout.setConstraints(toolbar_panel, c);
    all.add(toolbar_panel);
    // 2
    c.gridy++;
    c.fill = GridBagConstraints.HORIZONTAL;
    layout.setConstraints(transp_slider, c);
    all.add(transp_slider);
    // 3
    c.gridy++;
    c.weighty = 1;
    c.fill = GridBagConstraints.BOTH;
    layout.setConstraints(tabs, c);
    all.add(tabs);
    // 4
    c.gridy++;
    c.weighty = 0;
    c.fill = GridBagConstraints.NONE;
    layout.setConstraints(navigator, c);
    all.add(navigator);
    // 5
    c.gridy++;
    c.fill = GridBagConstraints.HORIZONTAL;
    layout.setConstraints(scroller, c);
    all.add(scroller);
    // Canvas
    this.canvas = new DisplayCanvas(this, (int) Math.ceil(layer.getLayerWidth()), (int) Math.ceil(layer.getLayerHeight()));
    c.insets = new Insets(0, 0, 0, 0);
    c.fill = GridBagConstraints.BOTH;
    c.anchor = GridBagConstraints.NORTHWEST;
    c.gridx = 1;
    c.gridy = 0;
    c.gridheight = GridBagConstraints.REMAINDER;
    c.weightx = 1;
    c.weighty = 1;
    layout.setConstraints(Display.this.canvas, c);
    all.add(canvas);
    // prevent new Displays from screwing up if input is globally disabled
    if (!project.isInputEnabled())
        Display.this.canvas.setReceivesInput(false);
    this.canvas.addComponentListener(canvas_size_listener);
    this.navigator.addMouseWheelListener(canvas);
    this.transp_slider.addKeyListener(canvas);
    // JFrame to show the split pane
    this.frame = ControlWindow.createJFrame(layer.toString());
    this.frame.setBackground(Color.white);
    this.frame.getContentPane().setBackground(Color.white);
    if (IJ.isMacintosh() && IJ.getInstance() != null) {
        // may be needed for Java 1.4 on OS X
        IJ.wait(10);
        this.frame.setMenuBar(ij.Menus.getMenuBar());
    }
    this.frame.addWindowListener(window_listener);
    // this.frame.addComponentListener(display_frame_listener);
    this.frame.getContentPane().add(all);
    if (null != props) {
        // restore canvas
        canvas.setup(mag, srcRect);
        // restore visibility of each channel
        // aka c_alphas_state
        final int cs = ((Integer) props[5]).intValue();
        final int[] sel = new int[4];
        sel[0] = ((cs & 0xff000000) >> 24);
        sel[1] = ((cs & 0xff0000) >> 16);
        sel[2] = ((cs & 0xff00) >> 8);
        sel[3] = (cs & 0xff);
        // restore channel alphas
        Display.this.c_alphas = ((Integer) props[4]).intValue();
        channels[0].setAlpha((float) ((c_alphas & 0xff000000) >> 24) / 255.0f, 0 != sel[0]);
        channels[1].setAlpha((float) ((c_alphas & 0xff0000) >> 16) / 255.0f, 0 != sel[1]);
        channels[2].setAlpha((float) ((c_alphas & 0xff00) >> 8) / 255.0f, 0 != sel[2]);
        channels[3].setAlpha((float) (c_alphas & 0xff) / 255.0f, 0 != sel[3]);
        // restore visibility in the working c_alphas
        Display.this.c_alphas = ((0 != sel[0] ? (int) (255 * channels[0].getAlpha()) : 0) << 24) + ((0 != sel[1] ? (int) (255 * channels[1].getAlpha()) : 0) << 16) + ((0 != sel[2] ? (int) (255 * channels[2].getAlpha()) : 0) << 8) + (0 != sel[3] ? (int) (255 * channels[3].getAlpha()) : 0);
    }
    if (null != active && null != layer) {
        final Rectangle r = active.getBoundingBox();
        r.x -= r.width / 2;
        r.y -= r.height / 2;
        r.width += r.width;
        r.height += r.height;
        if (r.x < 0)
            r.x = 0;
        if (r.y < 0)
            r.y = 0;
        if (r.width > layer.getLayerWidth())
            r.width = (int) layer.getLayerWidth();
        if (r.height > layer.getLayerHeight())
            r.height = (int) layer.getLayerHeight();
        final double magn = layer.getLayerWidth() / (double) r.width;
        canvas.setup(magn, r);
    }
    // add keyListener to the whole frame
    this.tabs.addKeyListener(canvas);
    this.frame.addKeyListener(canvas);
    // create a drag and drop listener
    dnd = new DNDInsertImage(Display.this);
    Utils.invokeLater(new Runnable() {

        @Override
        public void run() {
            Display.this.frame.pack();
            ij.gui.GUI.center(Display.this.frame);
            Display.this.frame.setVisible(true);
            // doesn't get it through events
            ProjectToolbar.setProjectToolbar();
            final Dimension screen = Toolkit.getDefaultToolkit().getScreenSize();
            if (null != props) {
                // fix positioning outside the screen (dual to single monitor)
                if (p.x >= 0 && p.x < screen.width - 50 && p.y >= 0 && p.y <= screen.height - 50)
                    Display.this.frame.setLocation(p);
                else
                    frame.setLocation(0, 0);
            }
            // fix excessive size
            final Rectangle box = Display.this.frame.getBounds();
            int x = box.x;
            int y = box.y;
            int width = box.width;
            int height = box.height;
            if (box.width > screen.width) {
                x = 0;
                width = screen.width;
            }
            if (box.height > screen.height) {
                y = 0;
                height = screen.height;
            }
            if (x != box.x || y != box.y) {
                // added insets for bad window managers
                Display.this.frame.setLocation(x, y + (0 == y ? 30 : 0));
            }
            if (width != box.width || height != box.height) {
                // added insets for bad window managers
                Display.this.frame.setSize(new Dimension(width - 10, height - 30));
            }
            if (null == props) {
                // try to optimize canvas dimensions and magn
                double magn = layer.getLayerHeight() / screen.height;
                if (magn > 1.0)
                    magn = 1.0;
                long size = 0;
                // limit magnification if appropriate
                for (final Displayable pa : layer.getDisplayables(Patch.class)) {
                    final Rectangle ba = pa.getBoundingBox();
                    size += (long) (ba.width * ba.height);
                }
                if (// 10 Mb
                size > 10000000)
                    // 10 Mb
                    canvas.setInitialMagnification(0.25);
                else {
                    Display.this.frame.setSize(new Dimension((int) (screen.width * 0.66), (int) (screen.height * 0.66)));
                }
            }
            updateTab(panel_patches);
            // re-layout:
            tabs.validate();
            // Set the calibration of the FakeImagePlus to that of the LayerSet
            ((FakeImagePlus) canvas.getFakeImagePlus()).setCalibrationSuper(layer.getParent().getCalibrationCopy());
            updateFrameTitle(layer);
            // Set the FakeImagePlus as the current image
            setTempCurrentImage();
            // start a repainting thread
            if (null != props) {
                // repaint() is unreliable
                canvas.repaint(true);
            }
            ControlWindow.setLookAndFeel();
        }
    });
}
Also used : JPanel(javax.swing.JPanel) GridBagConstraints(java.awt.GridBagConstraints) Insets(java.awt.Insets) GridBagLayout(java.awt.GridBagLayout) JTabbedPane(javax.swing.JTabbedPane) DNDInsertImage(ini.trakem2.utils.DNDInsertImage) Rectangle(java.awt.Rectangle) JScrollBar(javax.swing.JScrollBar) JSlider(javax.swing.JSlider) OptionPanel(ini.trakem2.utils.OptionPanel) JLabel(javax.swing.JLabel) Point(java.awt.Point) Dimension(java.awt.Dimension) Point(java.awt.Point) JEditorPane(javax.swing.JEditorPane) KeyListener(java.awt.event.KeyListener)

Example 15 with LayerSet

use of ini.trakem2.display.LayerSet in project TrakEM2 by trakem2.

the class Display3D method show.

/**
 * Scan the {@link ProjectThing} children and assign the renderable ones to an existing {@link Display3D} for their {@link LayerSet}, or open a new one. If {@code true == wait && -1 != resample}, then the method returns only when the mesh/es have been added.
 */
public static Future<Vector<Future<Content>>> show(final ProjectThing pt, final boolean wait, final int resample) {
    if (null == pt)
        return null;
    final Future<Vector<Future<Content>>> fu = launchers.submit(new Callable<Vector<Future<Content>>>() {

        @Override
        public Vector<Future<Content>> call() {
            // Scan the given ProjectThing for 3D-viewable items
            // So: find arealist, pipe, ball, and profile_list types
            final HashSet<ProjectThing> hs = pt.findBasicTypeChildren();
            if (null == hs || 0 == hs.size()) {
                Utils.logAll("Node " + pt + " does not contain any 3D-displayable children");
                return null;
            }
            // Remove profile if it lives under a profile_list
            for (final Iterator<ProjectThing> it = hs.iterator(); it.hasNext(); ) {
                final ProjectThing pt = it.next();
                if (null != pt.getObject() && pt.getObject().getClass() == Profile.class && pt.getParent().getType().equals("profile_list")) {
                    it.remove();
                }
            }
            setWaitingCursor();
            // Start new scheduler to publish/add meshes to the 3D Viewer every 5 seconds and when done.
            final Hashtable<Display3D, Vector<Content>> contents = new Hashtable<Display3D, Vector<Content>>();
            final ScheduledExecutorService updater = Executors.newScheduledThreadPool(1);
            final AtomicInteger counter = new AtomicInteger();
            updater.scheduleWithFixedDelay(new Runnable() {

                @Override
                public void run() {
                    // Obtain a copy of the contents queue
                    final HashMap<Display3D, Vector<Content>> m = new HashMap<Display3D, Vector<Content>>();
                    synchronized (contents) {
                        m.putAll(contents);
                        contents.clear();
                    }
                    if (m.isEmpty())
                        return;
                    // Add all to the corresponding Display3D
                    for (final Map.Entry<Display3D, Vector<Content>> e : m.entrySet()) {
                        e.getKey().universe.addContentLater(e.getValue());
                        counter.getAndAdd(e.getValue().size());
                    }
                    Utils.showStatus(new StringBuilder("Rendered ").append(counter.get()).append('/').append(hs.size()).toString());
                }
            }, 100, 4000, TimeUnit.MILLISECONDS);
            // A list of all generated Content objects
            final Vector<Future<Content>> list = new Vector<Future<Content>>();
            for (final Iterator<ProjectThing> it = hs.iterator(); it.hasNext(); ) {
                // obtain the Displayable object under the node
                final ProjectThing child = it.next();
                final Object obc = child.getObject();
                final Displayable displ = obc.getClass().equals(String.class) ? null : (Displayable) obc;
                if (null != displ) {
                    if (displ.getClass().equals(Profile.class)) {
                        // handled by profile_list Thing
                        continue;
                    }
                    if (!displ.isVisible()) {
                        Utils.log("Skipping non-visible node " + displ);
                        continue;
                    }
                }
                // obtain the containing LayerSet
                final Display3D d3d;
                if (null != displ)
                    d3d = Display3D.get(displ.getLayerSet());
                else if (child.getType().equals("profile_list")) {
                    final ArrayList<ProjectThing> al_children = child.getChildren();
                    if (null == al_children || 0 == al_children.size())
                        continue;
                    // else, get the first Profile and get its LayerSet
                    d3d = Display3D.get(((Displayable) ((ProjectThing) al_children.get(0)).getObject()).getLayerSet());
                } else {
                    Utils.log("Don't know what to do with node " + child);
                    d3d = null;
                }
                if (null == d3d) {
                    Utils.log("Could not get a proper 3D display for node " + displ);
                    // java3D not installed most likely
                    return null;
                }
                boolean already;
                synchronized (d3d.ht_pt_meshes) {
                    already = d3d.ht_pt_meshes.containsKey(child);
                }
                if (already) {
                    if (child.getObject() instanceof ZDisplayable) {
                        Utils.log("Updating 3D view of " + child.getObject());
                    } else {
                        Utils.log("Updating 3D view of " + child);
                    }
                }
                list.add(d3d.executors.submit(new Callable<Content>() {

                    @Override
                    public Content call() {
                        Content c = null;
                        try {
                            c = d3d.createMesh(child, displ, resample).call();
                            Vector<Content> vc;
                            synchronized (contents) {
                                vc = contents.get(d3d);
                                if (null == vc)
                                    vc = new Vector<Content>();
                                contents.put(d3d, vc);
                            }
                            vc.add(c);
                        } catch (final Exception e) {
                            IJError.print(e);
                        }
                        return c;
                    }
                }));
                // If it's the last one:
                if (!it.hasNext()) {
                    // Add the concluding task, that waits on all and shuts down the scheduler
                    d3d.executors.submit(new Runnable() {

                        @Override
                        public void run() {
                            // Wait until all are done
                            for (final Future<Content> c : list) {
                                try {
                                    c.get();
                                } catch (final Throwable t) {
                                    IJError.print(t);
                                }
                            }
                            try {
                                // Shutdown scheduler and execute remaining tasks
                                for (final Runnable r : updater.shutdownNow()) {
                                    r.run();
                                }
                            } catch (final Throwable e) {
                                IJError.print(e);
                            }
                            // Reset cursor
                            doneWaiting();
                            Utils.showStatus(new StringBuilder("Done rendering ").append(counter.get()).append('/').append(hs.size()).toString());
                        }
                    });
                }
            }
            return list;
        }
    });
    if (wait && -1 != resample) {
        try {
            fu.get();
        } catch (final Throwable t) {
            IJError.print(t);
        }
    }
    return fu;
}
Also used : HashMap(java.util.HashMap) Iterator(java.util.Iterator) Vector(java.util.Vector) ProjectThing(ini.trakem2.tree.ProjectThing) HashSet(java.util.HashSet) ScheduledExecutorService(java.util.concurrent.ScheduledExecutorService) Hashtable(java.util.Hashtable) AtomicInteger(java.util.concurrent.atomic.AtomicInteger) Content(ij3d.Content) Future(java.util.concurrent.Future) HashMap(java.util.HashMap) Map(java.util.Map)

Aggregations

ArrayList (java.util.ArrayList)24 Layer (ini.trakem2.display.Layer)22 LayerSet (ini.trakem2.display.LayerSet)20 HashMap (java.util.HashMap)20 HashSet (java.util.HashSet)19 Rectangle (java.awt.Rectangle)14 Patch (ini.trakem2.display.Patch)13 ImagePlus (ij.ImagePlus)11 GenericDialog (ij.gui.GenericDialog)11 ProjectThing (ini.trakem2.tree.ProjectThing)11 AffineTransform (java.awt.geom.AffineTransform)11 Map (java.util.Map)11 Future (java.util.concurrent.Future)11 Displayable (ini.trakem2.display.Displayable)10 ZDisplayable (ini.trakem2.display.ZDisplayable)10 Area (java.awt.geom.Area)10 Worker (ini.trakem2.utils.Worker)9 Point (java.awt.Point)9 TreeMap (java.util.TreeMap)9 DBObject (ini.trakem2.persistence.DBObject)8