Examples with Collection io.atlasmap.v2.Collection used on opensource projects

Example 6 with Collection

use of io.atlasmap.v2.Collection in project atlasmap by atlasmap.

the class BaseMarshallerTest method validateCollectionMapping.

private void validateCollectionMapping(Collection collection) {
    assertEquals(new BigInteger("2"), collection.getCollectionSize());
    assertEquals(CollectionType.LIST, collection.getCollectionType());
    Mapping mapping = (Mapping) collection.getMappings().getMapping().get(0);
    assertEquals(1, mapping.getInputField().size());
    validateJavaField((JavaField) mapping.getInputField().get(0));
    assertEquals(1, mapping.getOutputField().size());
    validateJavaField((JavaField) mapping.getOutputField().get(0));
    validateMapping(mapping, MappingType.MAP, generateMappingParams());
    mapping = (Mapping) collection.getMappings().getMapping().get(1);
    assertEquals(1, mapping.getInputField().size());
    validateJavaField((JavaField) mapping.getInputField().get(0));
    assertEquals(1, mapping.getOutputField().size());
    validateJavaField((JavaField) mapping.getOutputField().get(0));
    validateMapping(mapping, MappingType.MAP, generateMappingParams());
}

Example 7 with Collection

use of io.atlasmap.v2.Collection in project libSBOLj by SynBioDex.

the class CollectionOutput method main.

/**
 * @param args
 * @throws SBOLValidationException see SBOL validation rule violation at {@link Collection#addMember(URI)}
 * @throws SBOLConversionException
 */
public static void main(String[] args) throws SBOLValidationException, SBOLConversionException {
    SBOLDocument document = new SBOLDocument();
    document.setDefaultURIprefix("http://parts.igem.org/Promoters/Catalog");
    document.setTypesInURIs(false);
    Collection col = document.createCollection("Anderson", "");
    col.setName("Anderson promoters");
    col.setDescription("The Anderson promoter collection");
    col.addMember(URI.create("http://partsregistry.org/Part:BBa_J23119"));
    col.addMember(URI.create("http://partsregistry.org/Part:BBa_J23118"));
    SBOLWriter.write(document, (System.out));
}

Example 8 with Collection

use of io.atlasmap.v2.Collection in project atlasmap by atlasmap.

the class BaseMarshallerTest method generateCollectionMapping.

protected AtlasMapping generateCollectionMapping() {
    AtlasMapping innerMapping1 = generateAtlasMapping();
    AtlasMapping innerMapping2 = generateAtlasMapping();
    Collection cMapping = (Collection) AtlasModelFactory.createMapping(MappingType.COLLECTION);
    cMapping.setMappings(new Mappings());
    cMapping.getMappings().getMapping().addAll(innerMapping1.getMappings().getMapping());
    cMapping.getMappings().getMapping().addAll(innerMapping2.getMappings().getMapping());
    cMapping.setCollectionType(CollectionType.LIST);
    cMapping.setCollectionSize(new BigInteger("2"));
    cMapping.setAlias("alias");
    cMapping.setDescription("description");
    AtlasMapping mapping = generateAtlasMapping();
    mapping.getMappings().getMapping().clear();
    mapping.getMappings().getMapping().add(cMapping);
    return mapping;
}

Example 9 with Collection

use of io.atlasmap.v2.Collection in project atlasmap by atlasmap.

the class DefaultAtlasContext method extractCollectionMappings.

private List<Mapping> extractCollectionMappings(DefaultAtlasSession session, BaseMapping baseMapping) throws AtlasException {
    if (LOG.isDebugEnabled()) {
        LOG.debug("Generating Source Mappings from mapping: {}", baseMapping);
    }
    if (!baseMapping.getMappingType().equals(MappingType.COLLECTION)) {
        if (LOG.isDebugEnabled()) {
            LOG.debug("Mapping is not a collection mapping, not cloning: {}", baseMapping);
        }
        return Arrays.asList((Mapping) baseMapping);
    }
    List<Mapping> mappings = new LinkedList<>();
    for (BaseMapping m : ((Collection) baseMapping).getMappings().getMapping()) {
        Mapping mapping = (Mapping) m;
        Field sourceField = mapping.getInputField().get(0);
        boolean sourceIsCollection = AtlasPath.isCollection(sourceField.getPath());
        if (!sourceIsCollection) {
            // just copy it over
            if (LOG.isDebugEnabled()) {
                LOG.debug("Internal mapping's source field is not a collection, not cloning: {}", mapping);
            }
            // output object to be created for our copied firstName value
            for (Field f : mapping.getOutputField()) {
                f.setPath(AtlasPath.overwriteCollectionIndex(f.getPath(), 0));
            }
            mappings.add(mapping);
            continue;
        }
        AtlasModule module = resolveModule(FieldDirection.SOURCE, sourceField);
        int sourceCollectionSize = module.getCollectionSize(session, sourceField);
        if (LOG.isDebugEnabled()) {
            LOG.debug("Internal mapping's source field is a collection. Cloning it for each item ({} clones): {}", sourceCollectionSize, mapping);
        }
        for (int i = 0; i < sourceCollectionSize; i++) {
            Mapping cloneMapping = (Mapping) AtlasModelFactory.cloneMapping(mapping, false);
            for (Field f : mapping.getInputField()) {
                Field clonedField = module.cloneField(f);
                clonedField.setPath(AtlasPath.overwriteCollectionIndex(clonedField.getPath(), i));
                cloneMapping.getInputField().add(clonedField);
            }
            for (Field f : mapping.getOutputField()) {
                Field clonedField = module.cloneField(f);
                if (AtlasPath.isCollection(clonedField.getPath())) {
                    clonedField.setPath(AtlasPath.overwriteCollectionIndex(clonedField.getPath(), i));
                }
                cloneMapping.getOutputField().add(clonedField);
            }
            mappings.add(cloneMapping);
        }
    }
    if (LOG.isDebugEnabled()) {
        LOG.debug("Generated {} mappings from mapping: {}", mappings.size(), baseMapping);
    }
    ((Collection) baseMapping).getMappings().getMapping().clear();
    ((Collection) baseMapping).getMappings().getMapping().addAll(mappings);
    return mappings;
}

Example 10 with Collection

use of io.atlasmap.v2.Collection in project atlasmap by atlasmap.

the class SchemaInspector method printAttributes.

private void printAttributes(XSComplexType xsComplexType, String rootName, XmlComplexType xmlComplexType) {
    Collection<? extends XSAttributeUse> c = xsComplexType.getDeclaredAttributeUses();
    for (XSAttributeUse aC : c) {
        XmlField xmlField = AtlasXmlModelFactory.createXmlField();
        XSAttributeDecl attributeDecl = aC.getDecl();
        xmlField.setName(getNameNS(attributeDecl));
        if (attributeDecl.getDefaultValue() != null) {
            xmlField.setValue(attributeDecl.getDefaultValue().value);
        } else if (attributeDecl.getFixedValue() != null) {
            xmlField.setValue(attributeDecl.getFixedValue().value);
        }
        xmlField.setPath(rootName + "/" + "@" + getNameNS(attributeDecl));
        FieldType attrType = getFieldType(attributeDecl.getType().getName());
        xmlField.setFieldType(attrType);
        if (xmlField.getFieldType() == null) {
            // check the simple types in the schema....
            XSSimpleType simpleType = xsComplexType.getRoot().getSimpleType(xsComplexType.getTargetNamespace(), attributeDecl.getType().getName());
            if (simpleType != null) {
                FieldType fieldType = getFieldType(simpleType.getBaseType().getName());
                xmlField.setFieldType(fieldType);
                xmlField.setTypeName(attributeDecl.getType().getName());
                if (simpleType.asRestriction() != null) {
                    mapRestrictions(xmlField, simpleType.asRestriction());
                }
            } else {
                // cannot figure it out....
                xmlField.setFieldType(FieldType.UNSUPPORTED);
            }
        }
        xmlComplexType.getXmlFields().getXmlField().add(xmlField);
    }
}