Examples with Collection io.atlasmap.v2.Collection used on opensource projects

Example 1 with Collection

use of io.atlasmap.v2.Collection in project atlasmap by atlasmap.

the class StringComplexFieldActions method concatenate.

@AtlasFieldActionInfo(name = "Concatenate", sourceType = FieldType.ANY, targetType = FieldType.STRING, sourceCollectionType = CollectionType.ALL, targetCollectionType = CollectionType.NONE)
public static String concatenate(Action action, Object input) {
    if (action == null || !(action instanceof Concatenate)) {
        throw new IllegalArgumentException("Action must be a Concatenate action");
    }
    if (input == null) {
        return null;
    }
    Concatenate concat = (Concatenate) action;
    String delim = concat.getDelimiter() == null ? "" : concat.getDelimiter();
    Collection<?> inputs = collection(input);
    StringBuilder builder = new StringBuilder();
    for (Object entry : inputs) {
        if (builder.length() > 0) {
            builder.append(delim);
        }
        if (entry != null) {
            builder.append(entry.toString());
        }
    }
    return builder.toString();
}

Example 2 with Collection

use of io.atlasmap.v2.Collection in project atlasmap by atlasmap.

the class AtlasModuleSupportTest method testListTargetPathsListOfBaseMapping.

@Test
public void testListTargetPathsListOfBaseMapping() {
    List<BaseMapping> mappings = null;
    assertEquals(0, AtlasModuleSupport.listTargetPaths(mappings).size());
    mappings = new ArrayList<>();
    assertEquals(0, AtlasModuleSupport.listTargetPaths(mappings).size());
    Mapping mapping = new Mapping();
    Field field = new MockField();
    field.setPath("MockPath");
    mapping.getOutputField().add(field);
    mappings.add(mapping);
    assertEquals(1, AtlasModuleSupport.listTargetPaths(mappings).size());
    Collection collection = null;
    mappings.add(collection);
    assertEquals(1, AtlasModuleSupport.listTargetPaths(mappings).size());
    collection = new Collection();
    mappings.add(collection);
    assertEquals(1, AtlasModuleSupport.listTargetPaths(mappings).size());
    Mappings mapings = new Mappings();
    collection.setMappings(mapings);
    assertEquals(1, AtlasModuleSupport.listTargetPaths(mappings).size());
}

Example 3 with Collection

use of io.atlasmap.v2.Collection in project libSBOLj by SynBioDex.

the class CollectionOutput method main.

/**
 * @param args
 * @throws SBOLValidationException see SBOL validation rule violation at {@link Collection#addMember(URI)}
 * @throws SBOLConversionException
 */
public static void main(String[] args) throws SBOLValidationException, SBOLConversionException {
    SBOLDocument document = new SBOLDocument();
    document.setDefaultURIprefix("http://parts.igem.org/Promoters/Catalog");
    document.setTypesInURIs(false);
    Collection col = document.createCollection("Anderson", "");
    col.setName("Anderson promoters");
    col.setDescription("The Anderson promoter collection");
    col.addMember(URI.create("http://partsregistry.org/Part:BBa_J23119"));
    col.addMember(URI.create("http://partsregistry.org/Part:BBa_J23118"));
    SBOLWriter.write(document, (System.out));
}

Example 4 with Collection

use of io.atlasmap.v2.Collection in project atlasmap by atlasmap.

the class DefaultAtlasFieldActionService method packExpressionActionOutcomeIntoField.

private Field packExpressionActionOutcomeIntoField(Object values, Field field) {
    if (values instanceof List) {
        // n -> n and 1 -> n - create new FieldGroup
        FieldGroup fieldGroup = new FieldGroup();
        // Make sure fieldGroup is of a collection type
        AtlasPath groupPath = new AtlasPath(AtlasModelFactory.GENERATED_PATH);
        fieldGroup.setCollectionType(CollectionType.LIST);
        groupPath = new AtlasPath(groupPath.toString() + AtlasPath.PATH_LIST_SUFFIX);
        fieldGroup.setPath(groupPath.toString());
        List<?> tmpSourceList = (List<?>) values;
        while (tmpSourceList.size() == 1 && (tmpSourceList.get(0) instanceof List)) {
            tmpSourceList = (List<Object>) tmpSourceList.get(0);
        }
        FieldType type = null;
        for (int i = 0; i < tmpSourceList.size(); i++) {
            Object subValue = tmpSourceList.get(i);
            if (type == null && subValue != null) {
                type = getConversionService().fieldTypeFromClass(subValue.getClass());
            }
            Field subField = new SimpleField();
            AtlasPath subPath = groupPath.clone();
            subPath.setVacantCollectionIndex(i);
            AtlasModelFactory.copyField(fieldGroup, subField, false);
            subField.setPath(subPath.toString());
            subField.setIndex(null);
            subField.setValue(subValue);
            subField.setFieldType(type);
            subField.setCollectionType(CollectionType.NONE);
            fieldGroup.getField().add(subField);
        }
        return fieldGroup;
    }
    if (values != null) {
        field = new SimpleField();
        field.setPath(AtlasModelFactory.GENERATED_PATH);
        field.setValue(values);
        field.setFieldType(getConversionService().fieldTypeFromClass(values.getClass()));
    }
    return field;
}

Example 5 with Collection

use of io.atlasmap.v2.Collection in project atlasmap by atlasmap.

the class AtlasPath method setCollectionIndexRecursively.

/**
 * Sets the collection indexes recursively, which includes modifying path of the subsequent children.
 * @param group parent field
 * @param segmentIndex target segment index
 * @param index index to set
 */
public static void setCollectionIndexRecursively(FieldGroup group, int segmentIndex, int index) {
    AtlasPath path = new AtlasPath(group.getPath());
    path.setCollectionIndex(segmentIndex, index);
    group.setPath(path.toString());
    for (Field f : group.getField()) {
        if (f instanceof FieldGroup) {
            setCollectionIndexRecursively((FieldGroup) f, segmentIndex, index);
        } else {
            AtlasPath fpath = new AtlasPath(f.getPath());
            fpath.setCollectionIndex(segmentIndex, index);
            f.setPath(fpath.toString());
        }
    }
}