Examples with Obj io.github.mianalysis.mia.object.Obj used on opensource projects

Example 1 with Obj

use of io.github.mianalysis.mia.object.Obj in project mia by mianalysis.

the class MIA_GetObjectIDs method action.

@Override
public String action(Object[] objects, Workspace workspace, Modules modules) {
    String inputObjectsName = (String) objects[0];
    // Getting the input objects
    Objs inputObjects = workspace.getObjectSet(inputObjectsName);
    if (inputObjects == null)
        return "";
    StringBuilder sb = new StringBuilder();
    for (Obj inputObject : inputObjects.values()) {
        if (sb.length() == 0) {
            sb.append(inputObject.getID());
        } else {
            sb.append(",").append(inputObject.getID());
        }
    }
    return sb.toString();
}

Example 2 with Obj

use of io.github.mianalysis.mia.object.Obj in project mia by mianalysis.

the class MIA_GetObjectParentID method action.

@Override
public String action(Object[] objects, Workspace workspace, Modules modules) {
    String inputObjectsName = (String) objects[0];
    int objectID = (int) Math.round((Double) objects[1]);
    String parentObjectsName = (String) objects[2];
    // Getting the children of the input object
    Objs inputObjects = workspace.getObjectSet(inputObjectsName);
    if (inputObjects == null)
        return "";
    Obj inputObject = inputObjects.get(objectID);
    Obj parentObject = inputObject.getParent(parentObjectsName);
    return String.valueOf(parentObject.getID());
}

Example 3 with Obj

use of io.github.mianalysis.mia.object.Obj in project mia by mianalysis.

the class MIA_GetSliceAsROI method action.

@Override
public String action(Object[] objects, Workspace workspace, Modules modules) {
    String inputObjectsName = (String) objects[0];
    int inputObjectsID = (int) Math.round((Double) objects[1]);
    int slice = (int) Math.round((Double) objects[2]);
    // Getting the input objects
    Objs inputObjects = workspace.getObjectSet(inputObjectsName);
    if (inputObjects == null)
        return "";
    Obj inputObject = inputObjects.get(inputObjectsID);
    Roi roi = inputObject.getRoi(slice);
    RoiManager roiManager = RoiManager.getInstance2();
    roiManager.addRoi(roi);
    return "";
}

Example 4 with Obj

use of io.github.mianalysis.mia.object.Obj in project mia by mianalysis.

the class MIA_ListObjectsInWorkspace method action.

@Override
public String action(Object[] objects, Workspace workspace, Modules modules) {
    // Creating a new ResultsTable to hold the Image names
    ResultsTable rt = new ResultsTable();
    int row = 0;
    // Getting a list of Images in the Workspace
    HashMap<String, Objs> allObj = workspace.getObjects();
    for (String objName : allObj.keySet()) {
        if (row != 0)
            rt.incrementCounter();
        boolean measTest = false;
        Obj firstObj = allObj.get(objName).getFirst();
        if (firstObj != null)
            measTest = firstObj.size() == 0;
        String measurementsOnly = Boolean.toString(measTest);
        rt.setValue("Objects name", row, objName);
        rt.setValue("Number of objects", row, allObj.get(objName).size());
        rt.setValue("Measurements only", row, measurementsOnly);
        row++;
    }
    rt.show("Objects in workspace");
    return null;
}

Example 5 with Obj

use of io.github.mianalysis.mia.object.Obj in project mia by mianalysis.

the class MIA_GetObjectMeasurement method action.

@Override
public String action(Object[] objects, Workspace workspace, Modules modules) {
    String objectName = (String) objects[0];
    int objectID = (int) Math.round((Double) objects[1]);
    String measurementName = (String) objects[2];
    // Getting the object set
    Objs objCollection = workspace.getObjectSet(objectName);
    if (objCollection == null)
        return "";
    // Getting the object
    if (!objCollection.keySet().contains(objectID))
        return "";
    Obj obj = objCollection.get(objectID);
    // Getting the measurement
    Measurement measurement = obj.getMeasurement(measurementName);
    if (measurement == null)
        return "";
    // Returning measurement value
    return String.valueOf(measurement.getValue());
}