Examples with Note io.grafeas.v1.Note used on opensource projects

Example 16 with Note

use of io.grafeas.v1.Note in project BibleMultiConverter by schierlm.

the class ZefaniaXML method parseContent.

private boolean parseContent(Visitor<RuntimeException> visitor, List<Object> contentList, Map<BookID, String> abbrMap) throws IOException {
    boolean contentFound = false;
    for (Object n : contentList) {
        if (n instanceof String) {
            String value = normalize((String) n, false);
            visitor.visitText(value);
            contentFound |= value.trim().length() > 0;
        } else if (n instanceof DIV || n instanceof NOTE) {
            NOTE note;
            if (n instanceof DIV) {
                note = ((DIV) n).getNOTE();
            } else {
                note = (NOTE) n;
            }
            if (note.getContent().size() == 0)
                continue;
            Visitor<RuntimeException> v;
            v = visitor.visitFootnote();
            boolean subContentFound = parseContent(v, note.getContent(), abbrMap);
            if (!subContentFound)
                visitEmptyMarker(v);
            contentFound = true;
        } else if (n instanceof BR) {
            BR br = (BR) n;
            Visitor<RuntimeException> v = visitor;
            int count = 1;
            if (br.getCount() != null) {
                count = br.getCount().intValue();
            }
            if (count < 1 || count > 10)
                count = 1;
            for (int ii = 0; ii < count; ii++) {
                if (br.getArt() == EnumBreak.X_P)
                    v.visitLineBreak(LineBreakKind.PARAGRAPH);
                else
                    v.visitLineBreak(LineBreakKind.NEWLINE);
            }
            contentFound = true;
        } else if (n instanceof XREF) {
            XREF xref = (XREF) n;
            Visitor<RuntimeException> footnoteVisitor = visitor.visitFootnote();
            footnoteVisitor.visitText(FormattedText.XREF_MARKER.trim());
            boolean first = true;
            if (xref.getMscope() == null) {
                if (xref.getFscope() == null) {
                    System.out.println("WARNING: Ignoring XREF with neither fscope nor mscope");
                } else {
                    for (String fscope : xref.getFscope().split("; ")) {
                        Matcher m = Utils.compilePattern("([0-9A-Za-z]+) ([0-9]+), ([0-9]+[a-z]?)").matcher(fscope);
                        if (!m.matches()) {
                            System.out.println("WARNING: Unable to parse XREF fscope " + fscope + ", skipping");
                            continue;
                        }
                        String xBook = m.group(1);
                        int xChapter = Integer.parseInt(m.group(2));
                        String xVerse = m.group(3);
                        BookID xID = null;
                        for (Map.Entry<BookID, String> abbrEntry : abbrMap.entrySet()) {
                            if (abbrEntry.getValue().equals(xBook)) {
                                xID = abbrEntry.getKey();
                                break;
                            }
                        }
                        if (xID == null) {
                            System.out.println("WARNING: Book not found for XREF fscope " + fscope + ", skipping");
                            continue;
                        }
                        footnoteVisitor.visitText(" ");
                        footnoteVisitor.visitCrossReference(xBook, xID, xChapter, xVerse, xChapter, xVerse).visitText(xBook + " " + xChapter + ":" + xVerse);
                    }
                }
            } else {
                for (String mscope : xref.getMscope().split(" ")) {
                    Matcher m = Utils.compilePattern("([0-9]+);([0-9]+)(-[0-9]+)?;([0-9]+)(-[0-9]+)?").matcher(mscope);
                    if (!m.matches())
                        continue;
                    BookID bookID = BookID.fromZefId(Integer.parseInt(m.group(1)));
                    int chapter = Integer.parseInt(m.group(2)), endChapter = chapter;
                    if (m.group(3) != null)
                        endChapter = Integer.parseInt(m.group(3).substring(1));
                    String verse = m.group(4);
                    String endVerse = m.group(5);
                    if (endVerse == null)
                        endVerse = verse;
                    else
                        endVerse = endVerse.substring(1);
                    if (verse.equals("0") || endVerse.equals("0"))
                        continue;
                    if (chapter == endChapter && Integer.parseInt(verse) > Integer.parseInt(endVerse))
                        continue;
                    String abbr = abbrMap.get(bookID);
                    if (abbr == null)
                        abbr = bookID.getOsisID();
                    if (first)
                        first = false;
                    else
                        footnoteVisitor.visitText(" ");
                    footnoteVisitor.visitCrossReference(abbr, bookID, chapter, verse, endChapter, endVerse).visitText(abbr + " " + chapter + ":" + verse);
                }
            }
            if (first)
                visitEmptyMarker(footnoteVisitor);
            contentFound = true;
        } else if (n instanceof JAXBElement<?>) {
            String name = ((JAXBElement<?>) n).getName().toString();
            Object nn = ((JAXBElement<?>) n).getValue();
            if (name.equals("STYLE") && nn instanceof STYLE) {
                String css = ((STYLE) nn).getCss();
                String id = ((STYLE) nn).getId();
                FormattingInstructionKind kind = null;
                if (id != null && id.equals("cl:divineName")) {
                    kind = FormattingInstructionKind.DIVINE_NAME;
                } else if (css == null || css.startsWith("display:block;")) {
                    kind = null;
                } else if (css.contains("italic")) {
                    kind = FormattingInstructionKind.ITALIC;
                } else if (css.contains("bold")) {
                    kind = FormattingInstructionKind.BOLD;
                } else if (css.toLowerCase().contains("color:#ff0000")) {
                    kind = FormattingInstructionKind.WORDS_OF_JESUS;
                } else if (css.contains("color:blue")) {
                    kind = FormattingInstructionKind.LINK;
                } else if (css.contains("vertical-align:super") || css.equals("font-size:small")) {
                    kind = FormattingInstructionKind.SUPERSCRIPT;
                }
                Visitor<RuntimeException> contentVisitor = visitor;
                if (kind != null) {
                    contentVisitor = contentVisitor.visitFormattingInstruction(kind);
                } else if (css != null && (kind == null || !kind.getCss().equals(css))) {
                    contentVisitor = contentVisitor.visitCSSFormatting(css);
                }
                List<Object> content = ((STYLE) nn).getContent();
                boolean subContentFound = parseContent(contentVisitor, content, abbrMap);
                if (!subContentFound)
                    visitEmptyMarker(contentVisitor);
            } else if ((name.equals("gr") || name.equals("GRAM")) && nn instanceof GRAM) {
                GRAM gram = (GRAM) nn;
                boolean addSpace = false;
                int lastIndex = gram.getContent().size() - 1;
                if (lastIndex >= 0 && gram.getContent().get(lastIndex) instanceof String) {
                    String lastString = normalize((String) gram.getContent().get(lastIndex), false);
                    if (lastString.endsWith(" ")) {
                        String afterString = "";
                        int pos = contentList.indexOf(n);
                        if (pos < contentList.size() - 1 && contentList.get(pos + 1) instanceof String) {
                            afterString = normalize((String) contentList.get(pos + 1), false);
                        }
                        if (!afterString.startsWith(" ")) {
                            addSpace = true;
                            gram.getContent().set(lastIndex, lastString.substring(0, lastString.length() - 1));
                        }
                    }
                }
                Visitor<RuntimeException> strongVisitor = visitor;
                int[] strongs = null;
                char[] strongsPrefixes = null;
                if (gram.getStr() != null) {
                    List<String> strongList = new ArrayList<String>(Arrays.asList(gram.getStr().trim().replaceAll(" ++", " ").split(" ")));
                    for (int i = 0; i < strongList.size(); i++) {
                        if (!strongList.get(i).matches("[GH]?[0-9]+")) {
                            System.out.println("WARNING: Skipping invalid Strong number " + strongList.get(i));
                            strongList.remove(i);
                            i--;
                        }
                    }
                    strongs = new int[strongList.size()];
                    strongsPrefixes = strongList.size() == 0 ? null : new char[strongList.size()];
                    for (int i = 0; i < strongs.length; i++) {
                        if (strongList.get(i).matches("[GH][0-9]+")) {
                            strongsPrefixes[i] = strongList.get(i).charAt(0);
                            strongs[i] = Integer.parseInt(strongList.get(i).substring(1));
                        } else {
                            strongsPrefixes = null;
                            strongs[i] = Integer.parseInt(strongList.get(i));
                        }
                    }
                }
                String[] rmac = null;
                if (gram.getRmac() != null && gram.getRmac().length() > 0) {
                    List<String> rmacList = new ArrayList<String>(Arrays.asList(gram.getRmac().toUpperCase().split(" ")));
                    for (int i = 0; i < rmacList.size(); i++) {
                        String rmacValue = rmacList.get(i);
                        if (rmacValue.endsWith("-"))
                            rmacValue = rmacValue.substring(0, rmacValue.length() - 1);
                        rmacList.set(i, rmacValue);
                        if (!rmacValue.matches(Utils.RMAC_REGEX)) {
                            System.out.println("WARNING: Skipping invalid RMAC: " + rmacValue);
                            rmacList.remove(i);
                            i--;
                        }
                        rmac = (String[]) rmacList.toArray(new String[rmacList.size()]);
                    }
                }
                if (strongs != null && strongs.length == 0)
                    strongs = null;
                if (rmac != null && rmac.length == 0)
                    rmac = null;
                if (strongs != null || rmac != null)
                    strongVisitor = strongVisitor.visitGrammarInformation(strongsPrefixes, strongs, rmac, null);
                if (!parseContent(strongVisitor, gram.getContent(), abbrMap) && strongVisitor != visitor) {
                    visitEmptyMarker(strongVisitor);
                }
                if (addSpace)
                    visitor.visitText(" ");
            } else {
                continue;
            }
            contentFound = true;
        }
    }
    return contentFound;
}

Example 17 with Note

use of io.grafeas.v1.Note in project BibleMultiConverter by schierlm.

the class ZefaniaXMLRoundtrip method parseContent.

private boolean parseContent(Visitor<RuntimeException> visitor, List<Object> contentList, Map<BookID, String> abbrMap) throws IOException {
    boolean contentFound = false;
    for (Object n : contentList) {
        if (n instanceof String) {
            String value = normalize((String) n, false);
            visitor.visitText(value);
            contentFound |= value.trim().length() > 0;
        } else if (n instanceof DIV || n instanceof NOTE) {
            NOTE note;
            Visitor<RuntimeException> v;
            if (n instanceof DIV) {
                note = ((DIV) n).getNOTE();
                if (note.getContent().size() == 0)
                    continue;
                v = visitor.visitExtraAttribute(ExtraAttributePriority.KEEP_CONTENT, "zefania", "footnote-source", "div").visitFootnote();
            } else {
                note = (NOTE) n;
                if (note.getContent().size() == 0)
                    continue;
                v = visitor.visitFootnote();
            }
            boolean subContentFound = parseContent(v, note.getContent(), abbrMap);
            if (!subContentFound)
                visitEmptyMarker(v);
            contentFound = true;
        } else if (n instanceof BR) {
            BR br = (BR) n;
            Visitor<RuntimeException> v = visitor;
            int count = 1;
            if (br.getCount() != null) {
                count = br.getCount().intValue();
                v = visitor.visitExtraAttribute(ExtraAttributePriority.KEEP_CONTENT, "zefania", "newline-group", br.getCount() + "--" + br.getArt().value());
            }
            if (count < 1 || count > 10)
                throw new RuntimeException();
            for (int ii = 0; ii < count; ii++) {
                switch(br.getArt()) {
                    case X_NL:
                        v.visitLineBreak(LineBreakKind.NEWLINE);
                        break;
                    case X_P:
                        v.visitLineBreak(LineBreakKind.PARAGRAPH);
                        break;
                    default:
                        throw new RuntimeException(br.getArt().toString());
                }
            }
            contentFound = true;
        } else if (n instanceof XREF) {
            XREF xref = (XREF) n;
            Visitor<RuntimeException> footnoteVisitor = visitor.visitExtraAttribute(ExtraAttributePriority.KEEP_CONTENT, "zefania", "footnote-source", "inner-xref").visitFootnote();
            boolean first = true;
            for (String mscope : xref.getMscope().split(" ")) {
                Matcher m = Utils.compilePattern("([0-9]+);([0-9]+)(-[0-9]+)?;([0-9]+)(-[0-9]+)?").matcher(mscope);
                if (!m.matches())
                    throw new IOException(mscope);
                BookID bookID = BookID.fromZefId(Integer.parseInt(m.group(1)));
                int chapter = Integer.parseInt(m.group(2)), endChapter = chapter;
                if (m.group(3) != null)
                    endChapter = Integer.parseInt(m.group(3).substring(1));
                String verse = m.group(4);
                if (verse.equals("0"))
                    verse = "1//G";
                String endVerse = m.group(5);
                if (endVerse == null)
                    endVerse = verse;
                else
                    endVerse = endVerse.substring(1);
                if (endVerse.equals("0"))
                    endVerse = "1//G";
                String abbr = abbrMap.get(bookID);
                if (abbr == null)
                    abbr = bookID.getOsisID();
                if (first)
                    first = false;
                else
                    footnoteVisitor.visitText(" ");
                if (chapter == endChapter && !verse.equals("1//G") && !endVerse.equals("1//G") && Integer.parseInt(verse) > Integer.parseInt(endVerse)) {
                    String tmp = verse;
                    verse = endVerse;
                    endVerse = tmp;
                }
                footnoteVisitor.visitCrossReference(abbr, bookID, chapter, verse, endChapter, endVerse).visitText(abbr + " " + chapter + ":" + verse);
            }
            contentFound = true;
        } else if (n instanceof JAXBElement<?>) {
            String name = ((JAXBElement<?>) n).getName().toString();
            Object nn = ((JAXBElement<?>) n).getValue();
            if (name.equals("STYLE") && nn instanceof STYLE) {
                String css = ((STYLE) nn).getCss();
                String id = ((STYLE) nn).getId();
                if (id != null && css != null)
                    throw new IOException(id + "/" + css);
                if (css != null && css.startsWith("display:block;")) {
                    // not really a formatting instruction, but more some
                    // clever way of indentation
                    List<Object> content = ((STYLE) nn).getContent();
                    Visitor<RuntimeException> contentVisitor = visitor.visitCSSFormatting(css);
                    boolean subContentFound = parseContent(contentVisitor, content, abbrMap);
                    if (!subContentFound)
                        visitEmptyMarker(contentVisitor);
                } else {
                    FormattingInstructionKind kind;
                    if (id != null && id.equals("cl:divineName")) {
                        kind = FormattingInstructionKind.DIVINE_NAME;
                    } else if (css == null) {
                        throw new IOException(id);
                    } else if (css.contains("italic")) {
                        kind = FormattingInstructionKind.ITALIC;
                    } else if (css.contains("bold")) {
                        kind = FormattingInstructionKind.BOLD;
                    } else if (css.equalsIgnoreCase("color:#FF0000")) {
                        kind = FormattingInstructionKind.WORDS_OF_JESUS;
                    } else if (css.equals("color:blue")) {
                        kind = FormattingInstructionKind.LINK;
                    } else if (css.equals("color:#00CC33;font-size:8pt;vertical-align:super") || css.equals("font-size:small")) {
                        kind = FormattingInstructionKind.SUPERSCRIPT;
                    } else {
                        throw new IOException(css);
                    }
                    List<Object> content = ((STYLE) nn).getContent();
                    Visitor<RuntimeException> contentVisitor = visitor.visitFormattingInstruction(kind);
                    if (css != null && !kind.getCss().equals(css)) {
                        contentVisitor = contentVisitor.visitCSSFormatting(css);
                    }
                    if (content.size() == 0) {
                        visitEmptyMarker(contentVisitor);
                    } else {
                        boolean subContentFound = parseContent(contentVisitor, content, abbrMap);
                        if (!subContentFound)
                            visitEmptyMarker(contentVisitor);
                    }
                }
            } else if ((name.equals("gr") || name.equals("GRAM")) && nn instanceof GRAM) {
                GRAM gram = (GRAM) nn;
                Visitor<RuntimeException> strongVisitor = visitor;
                if (!name.equals("GRAM")) {
                    strongVisitor = strongVisitor.visitExtraAttribute(ExtraAttributePriority.KEEP_CONTENT, "zefania", "gram-tag", name);
                }
                if (gram.getStr() == null && gram.getRmac() == null)
                    throw new IOException();
                boolean realPrefixes = false;
                char[] strongsPrefixes = null;
                int[] strongs = null;
                if (gram.getStr() != null) {
                    String strong = gram.getStr().trim().replaceAll(" ++", " ");
                    if (strong.length() == 0)
                        strong = "0";
                    if (strong.equals("?"))
                        strong = "99111";
                    if (!strong.matches("[GH]?[0-9]+( [GH]?[0-9]+)*"))
                        throw new IOException(strong);
                    String[] tmpStrongs = strong.split(" ");
                    strongsPrefixes = new char[tmpStrongs.length];
                    strongs = new int[tmpStrongs.length];
                    for (int i = 0; i < tmpStrongs.length; i++) {
                        if (tmpStrongs[i].matches("[GH][0-9]+")) {
                            strongsPrefixes[i] = tmpStrongs[i].charAt(0);
                            strongs[i] = Integer.parseInt(tmpStrongs[i].substring(1));
                            realPrefixes = true;
                        } else {
                            strongsPrefixes[i] = 'X';
                            strongs[i] = Integer.parseInt(tmpStrongs[i]);
                        }
                    }
                }
                String[] rmacs = null;
                if (gram.getRmac() != null) {
                    String rmac = gram.getRmac();
                    rmacs = rmac.split(" ");
                }
                strongVisitor = strongVisitor.visitGrammarInformation(realPrefixes ? strongsPrefixes : null, strongs, rmacs, null);
                if (!parseContent(strongVisitor, gram.getContent(), abbrMap)) {
                    visitEmptyMarker(strongVisitor);
                }
            } else {
                throw new IOException(name + "/" + nn.getClass().toString());
            }
            contentFound = true;
        } else {
            throw new IOException(n.getClass().toString());
        }
    }
    return contentFound;
}

Example 18 with Note

use of io.grafeas.v1.Note in project java-docs-samples by GoogleCloudPlatform.

the class SamplesTest method testCreateNote.

@Test
public void testCreateNote() throws Exception {
    // note should have been created as part of set up. verify that it succeeded
    Note n = GetNote.getNote(noteId, PROJECT_ID);
    assertEquals(n.getName(), noteObj.getName());
}

Example 19 with Note

use of io.grafeas.v1.Note in project java-docs-samples by GoogleCloudPlatform.

the class SamplesTest method testPollDiscoveryOccurrenceFinished.

@Test
public void testPollDiscoveryOccurrenceFinished() throws Exception {
    try {
        // expect fail on first try
        PollDiscoveryOccurrenceFinished.pollDiscoveryOccurrenceFinished(imageUrl, PROJECT_ID, 5);
        Assert.fail("found unexpected discovery occurrence");
    } catch (TimeoutException e) {
    // test passes
    }
    // create discovery note
    Note newNote = Note.newBuilder().setDiscovery(DiscoveryNote.newBuilder().setAnalysisKind(NoteKind.DISCOVERY)).build();
    String discNoteId = "discovery-note-" + (new Date()).getTime();
    NoteName noteName = NoteName.of(PROJECT_ID, discNoteId);
    GrafeasClient client = ContainerAnalysisClient.create().getGrafeasClient();
    client.createNote(ProjectName.format(PROJECT_ID), discNoteId, newNote);
    // create discovery occurrence
    Occurrence newOcc = Occurrence.newBuilder().setNoteName(noteName.toString()).setResourceUri(imageUrl).setDiscovery(DiscoveryOccurrence.newBuilder().setAnalysisStatus(AnalysisStatus.FINISHED_SUCCESS)).build();
    Occurrence result = client.createOccurrence(ProjectName.format(PROJECT_ID), newOcc);
    // poll again
    Occurrence found = PollDiscoveryOccurrenceFinished.pollDiscoveryOccurrenceFinished(imageUrl, PROJECT_ID, 5);
    AnalysisStatus foundStatus = found.getDiscovery().getAnalysisStatus();
    assertEquals(foundStatus, AnalysisStatus.FINISHED_SUCCESS);
    // clean up
    String[] nameArr = found.getName().split("/");
    String occId = nameArr[nameArr.length - 1];
    DeleteOccurrence.deleteOccurrence(occId, PROJECT_ID);
    DeleteNote.deleteNote(discNoteId, PROJECT_ID);
}

Example 20 with Note

use of io.grafeas.v1.Note in project java-docs-samples by GoogleCloudPlatform.

the class CreateNote method createNote.

// Creates and returns a new Note
public static Note createNote(String noteId, String projectId) throws IOException, InterruptedException {
    // String noteId = "my-note";
    // String projectId = "my-project-id";
    final String projectName = ProjectName.format(projectId);
    Note newNote = Note.newBuilder().setVulnerability(VulnerabilityNote.newBuilder().addDetails(VulnerabilityNote.Detail.newBuilder().setAffectedCpeUri("your-uri-here").setAffectedPackage("your-package-here").setAffectedVersionStart(Version.newBuilder().setKind(Version.VersionKind.MINIMUM)).setAffectedVersionEnd(Version.newBuilder().setKind(Version.VersionKind.MAXIMUM)))).build();
    // Initialize client that will be used to send requests. After completing all of your requests,
    // call the "close" method on the client to safely clean up any remaining background resources.
    GrafeasClient client = ContainerAnalysisClient.create().getGrafeasClient();
    Note result = client.createNote(projectName, noteId, newNote);
    return result;
}