Examples with LongList it.unimi.dsi.fastutil.longs.LongList used on opensource projects

Example 1 with LongList

use of it.unimi.dsi.fastutil.longs.LongList in project presto by prestodb.

the class TestColumnIndexFilter method assertAllRows.

private static void assertAllRows(RowRanges ranges, long rowCount) {
    LongList actualList = new LongArrayList();
    ranges.iterator().forEachRemaining((long value) -> actualList.add(value));
    LongList expectedList = new LongArrayList();
    LongStream.range(0, rowCount).forEach(expectedList::add);
    assertArrayEquals(expectedList + " != " + actualList, expectedList.toLongArray(), actualList.toLongArray());
}

Example 2 with LongList

use of it.unimi.dsi.fastutil.longs.LongList in project snow-owl by b2ihealthcare.

the class LongArrayDequeWrapper method addLast.

@Override
public void addLast(long value) {
    final LongList delegate = delegate();
    delegate.add(delegate.size(), value);
}

Example 3 with LongList

use of it.unimi.dsi.fastutil.longs.LongList in project cdap by caskdata.

the class StreamDataFileIndex method loadIndex.

private Map.Entry<LongList, LongList> loadIndex(InputStream input) throws IOException {
    byte[] magic = new byte[INDEX_MAGIC_HEADER.length];
    ByteStreams.readFully(input, magic);
    if (!Arrays.equals(magic, INDEX_MAGIC_HEADER)) {
        throw new IOException("Unsupported index file format. Expected magic bytes as 'I' '1'");
    }
    // Decode the properties map. In current version, it is not used.
    StreamUtils.decodeMap(new BinaryDecoder(input));
    // Read in all index (timestamp, position pairs).
    LongList timestamps = new LongArrayList(1000);
    LongList positions = new LongArrayList(1000);
    byte[] buf = new byte[Longs.BYTES * 2];
    while (ByteStreams.read(input, buf, 0, buf.length) == buf.length) {
        timestamps.add(Bytes.toLong(buf, 0));
        positions.add(Bytes.toLong(buf, Longs.BYTES));
    }
    return Maps.immutableEntry(timestamps, positions);
}

Example 4 with LongList

use of it.unimi.dsi.fastutil.longs.LongList in project gridss by PapenfussLab.

the class MisassemblyFixer method createContigTransitionOffsetLookup.

private static NavigableMap<Integer, ImmutableTriple<Integer, LongList, LongList>> createContigTransitionOffsetLookup(List<KmerPathSubnode> contig) {
    NavigableMap<Integer, ImmutableTriple<Integer, LongList, LongList>> lookup = new TreeMap<Integer, ImmutableTriple<Integer, LongList, LongList>>();
    int snoffset = 0;
    for (int i = 0; i < contig.size() - 1; i++) {
        KmerPathSubnode sn = contig.get(i);
        LongArrayList snendkmers = new LongArrayList();
        snendkmers.add(sn.lastKmer());
        for (int j = 0; j < sn.node().collapsedKmerOffsets().size(); j++) {
            int offset = sn.node().collapsedKmerOffsets().getInt(j);
            if (offset == sn.length() - 1) {
                snendkmers.add(sn.node().collapsedKmers().getLong(j));
            }
        }
        KmerPathSubnode snext = contig.get(i + 1);
        LongArrayList snextstartkmers = new LongArrayList();
        snextstartkmers.add(snext.firstKmer());
        for (int j = 0; j < snext.node().collapsedKmerOffsets().size(); j++) {
            int offset = snext.node().collapsedKmerOffsets().getInt(j);
            if (offset == 0) {
                snextstartkmers.add(snext.node().collapsedKmers().getLong(j));
            }
        }
        lookup.put(snoffset + sn.length() - 1, new ImmutableTriple<Integer, LongList, LongList>(i, snendkmers, snextstartkmers));
        snoffset += sn.length();
    }
    return lookup;
}

Example 5 with LongList

use of it.unimi.dsi.fastutil.longs.LongList in project presto by prestodb.

the class TestColumnIndexFilter method assertRows.

private static void assertRows(RowRanges ranges, long... expectedRows) {
    LongList actualList = new LongArrayList();
    ranges.iterator().forEachRemaining((long value) -> actualList.add(value));
    assertArrayEquals(Arrays.toString(expectedRows) + " != " + actualList, expectedRows, actualList.toLongArray());
}