Examples with GetConfig massbank.GetConfig used on opensource projects

Example 1 with GetConfig

use of massbank.GetConfig in project MassBank-web by MassBank.

the class Display method init.

/**
 * ��������
 */
public void init() {
    // �A�v���b�g�R���e�L�X�g�擾
    context = getAppletContext();
    // �‹��ݒ�t�@�C������T�[�oURL�擾
    String confPath = getCodeBase().toString();
    confPath = confPath.replaceAll("jsp/", "");
    GetConfig conf = new GetConfig(confPath);
    baseUrl = conf.getServerUrl();
    // ---------------------------------------------
    // ���N�G�X�g��ʂ��Z�b�g����
    // ---------------------------------------------
    String reqType = "";
    if (getParameter("type") != null) {
        reqType = getParameter("type");
    }
    // ---------------------------------------------
    // �v���J�[�T�l���Z�b�g����
    // ---------------------------------------------
    String precursor = "";
    if (getParameter("precursor") != null) {
        precursor = getParameter("precursor");
    }
    // ---------------------------------------------
    // �s�[�N�f�[�^���擾����
    // ---------------------------------------------
    Vector<String> vecMzs = new Vector<String>();
    if (getParameter("qpeak") != null) {
        // Applet�p�����[�^����s�[�N�f�[�^���擾����
        String paramPeak = getParameter("qpeak");
        String[] line = paramPeak.split("@");
        for (int i = 0; i < line.length; i++) {
            String[] item = line[i].split(",");
            vecMzs.add(item[0] + "\t" + item[1]);
        }
    } else {
        // DB����s�[�N�f�[�^���擾����
        vecMzs = getPeaksFromDB();
    }
    // ---------------------------------------------
    // �s�[�N�̐F�Â��ɕK�v�ȏ����擾����
    // ---------------------------------------------
    ColorInfo colorInfo = getColorInfo(reqType);
    setLayout(new BorderLayout());
    // ---------------------------------------------
    // �X�y�N�g���\���p�l���lj�
    // ---------------------------------------------
    Peak peak = new Peak(vecMzs);
    this.plotPane = new PlotPane(reqType, peak, colorInfo, precursor);
    add(plotPane, BorderLayout.CENTER);
    // ---------------------------------------------
    // �{�^���p�l���lj�
    // ---------------------------------------------
    ButtonPane pane = new ButtonPane();
    if (reqType.equals("diff")) {
        pane.addDiffButton();
    }
    add(pane, BorderLayout.SOUTH);
}

Example 2 with GetConfig

use of massbank.GetConfig in project MassBank-web by MassBank.

the class BrowsePage method init.

public void init() {
    // �‹��ݒ�t�@�C������A�g�T�C�g��URL���擾
    String confPath = getCodeBase().toString();
    GetConfig conf = new GetConfig(confPath);
    String severUrl = conf.getServerUrl();
    baseUrl = severUrl + "jsp/";
    // �c���[�̃��x�����uMassBank / Keio Unive...�v�̂悤�ɏȗ������̂����
    // MyRenderer()���ĂԑO�ɃC���[�W�A�C�R���̏��������s���K�v������
    String imageUrl = severUrl + "/image";
    URL url = null;
    try {
        url = new URL(imageUrl + "/data.png");
        MassIcon = new ImageIcon(url);
        url = new URL(imageUrl + "/none.png");
        EmptyIcon = new ImageIcon(url);
        url = new URL(imageUrl + "/plus.png");
        CloseIcon = new ImageIcon(url);
        url = new URL(imageUrl + "/minus.png");
        OpenIcon = new ImageIcon(url);
    } catch (MalformedURLException e) {
        // ������URL�̏ꍇ�̓A�C�R�����\������Ȃ������ŁA�ȍ~�̏����͍s�����Ƃ���
        e.printStackTrace();
    }
    if (getParameter("site") != null && !getParameter("site").equals("")) {
        site = getParameter("site");
    }
    if (getParameter("mode") != null && !getParameter("mode").equals("")) {
        mode = getParameter("mode").split(",");
    }
    InterNode dummy_root = new InterNode(MyTreeNode.DUMMY_ROOT, "", 1);
    dummy_root.loadSon();
    if (dummy_root.getChildCount() == 0) {
        // �A�C�R���\����ύX���邽�߃��[�g��EmptyNode�Ƃ���
        String[] siteName = conf.getSiteName();
        EmptyNode rootNode = new EmptyNode(MyTreeNode.DUMMY_ROOT, "MassBank / " + siteName[Integer.parseInt(site)]);
        treeModel = new DefaultTreeModel(rootNode);
        tree = new JTree(treeModel);
        tree.setCellRenderer(new MyRenderer());
        tree.setRootVisible(true);
    } else {
        treeModel = new DefaultTreeModel(dummy_root);
        tree = new JTree(treeModel);
        // �����\���̃c���[�W�J�Ή�
        InterNode rootNode = (InterNode) dummy_root.getFirstChild();
        rootNode.loadSon();
        tree.expandPath(new TreePath(rootNode.getPath()));
        // Mass�̉E�N���b�N�Ή�
        tree.addMouseListener(new ShowMass());
        // �c���[�̃N���b�N�񐔎w��
        tree.setToggleClickCount(1);
        tree.addTreeWillExpandListener(new MyTreeListener());
        tree.setCellRenderer(new MyRenderer());
        tree.setRootVisible(false);
    }
    JScrollPane sc = new JScrollPane(tree);
    JPanel c = new JPanel();
    c.setLayout(new BorderLayout());
    c.add(sc, BorderLayout.CENTER);
    add(c);
    applet = this;
}

Example 3 with GetConfig

use of massbank.GetConfig in project MassBank-web by MassBank.

the class PackageView method init.

/**
 * ���C���v���O����
 */
public void init() {
    // �A�v���b�g�R���e�L�X�g�擾
    context = getAppletContext();
    // �A�v���b�g������ʃT�C�Y�擾
    initAppletWidth = getWidth();
    initAppletHight = getHeight();
    // �‹��ݒ�t�@�C������A�g�T�C�g��URL���擾
    String confPath = getCodeBase().toString();
    confPath = confPath.replaceAll("/jsp", "");
    GetConfig conf = new GetConfig(confPath);
    baseUrl = conf.getServerUrl();
    // �c�[���`�b�v�}�l�[�W���[�ݒ�
    ToolTipManager ttm = ToolTipManager.sharedInstance();
    ttm.setInitialDelay(50);
    ttm.setDismissDelay(8000);
    setLayout(new BorderLayout());
    // ���C���p�l��
    JPanel mainPanel = new JPanel();
    mainPanel.setLayout(new BorderLayout());
    Border border = BorderFactory.createCompoundBorder(BorderFactory.createEtchedBorder(), new EmptyBorder(0, 5, 0, 5));
    mainPanel.setBorder(border);
    // PackageView�����y�сA������
    pkgView = new PackageViewPanel();
    pkgView.initAllRecInfo();
    mainPanel.add(new HeaderPane(), BorderLayout.NORTH);
    mainPanel.add(pkgView, BorderLayout.CENTER);
    mainPanel.add(new FooterPane(), BorderLayout.SOUTH);
    add(mainPanel);
    // ���[�U�[�t�@�C���Ǎ���
    if (getParameter("file") != null) {
        loadFile(getParameter("file"));
    }
}

Example 4 with GetConfig

use of massbank.GetConfig in project MassBank-web by MassBank.

the class ServerStatus method setBaseInfo.

/**
 * ベース情報をセット
 */
public void setBaseInfo() {
    // 設定ファイル読込み
    GetConfig conf = new GetConfig(MassBankEnv.get(MassBankEnv.KEY_BASE_URL));
    // URLリストを取得
    String[] urls = conf.getSiteUrl();
    // DB名リストを取得
    String[] dbNames = conf.getDbName();
    // セカンダリDB名リストを取得
    String[] db2Names = conf.getSecondaryDBName();
    // サーバ名リストを取得
    String[] svrNames = conf.getSiteName();
    // フロントサーバURLを取得
    String serverUrl = conf.getServerUrl();
    // ポーリング周期を取得
    this.pollInterval = conf.getPollInterval();
    // 監視対象サーバのURLとDB名を格納
    List<String> svrNameList = new ArrayList();
    List<String> urlList = new ArrayList();
    List<String> dbNameList = new ArrayList();
    List<String> db2NameList = new ArrayList();
    for (int i = 0; i < urls.length; i++) {
        // ミドルサーバまたは、フロントサーバと同一URLの場合は対象外
        if (i != GetConfig.MYSVR_INFO_NUM && !urls[i].equals(serverUrl)) {
            svrNameList.add(svrNames[i]);
            urlList.add(urls[i]);
            dbNameList.add(dbNames[i]);
            db2NameList.add(db2Names[i]);
        }
    }
    // 状態管理リストをセット
    this.serverNum = urlList.size();
    if (this.serverNum > 0) {
        this.statusList = new ServerStatusInfo[this.serverNum];
        for (int i = 0; i < svrNameList.size(); i++) {
            // サーバ名
            String svrName = svrNameList.get(i);
            // URL
            String url = urlList.get(i);
            // DB名
            String dbName = dbNameList.get(i);
            // セカンダリDB名
            String db2Name = db2NameList.get(i);
            // ステータスは未セット
            this.statusList[i] = new ServerStatusInfo(svrName, url, dbName, db2Name);
        }
    }
}

Example 5 with GetConfig

use of massbank.GetConfig in project MassBank-web by MassBank.

the class MSDBUpdater method run.

/**
 * Starting the thread.
 */
public void run() {
    try {
        sleep(this.startDelay * TIME_SEC);
    } catch (Exception e) {
    }
    GetConfig conf = new GetConfig(MassBankEnv.get(MassBankEnv.KEY_BASE_URL));
    String myServerUrl = conf.getServerUrl();
    String[] urls = conf.getSiteUrl();
    String[] names = conf.getSiteName();
    String[] dbNames = conf.getDbName();
    String[] dbNames2 = conf.getSecondaryDBName();
    this.serverUrl = urls[GetConfig.MYSVR_INFO_NUM];
    ArrayList<String> targetNameList = new ArrayList<String>();
    ArrayList<String> targetDbNameList = new ArrayList<String>();
    for (int i = 1; i < urls.length; i++) {
        if (!urls[i].equals(myServerUrl) && !dbNames2[i].equals("")) {
            targetNameList.add(names[i]);
            targetDbNameList.add(dbNames2[i]);
        } else if (urls[i].equals(myServerUrl) && dbNames[i].indexOf(BACKUP_IDENTIFIER) != -1) {
            targetNameList.add(names[i]);
            targetDbNameList.add(dbNames[i]);
        }
    }
    String[] targetNames = targetNameList.toArray(new String[] {});
    String[] targetDbNames = targetDbNameList.toArray(new String[] {});
    String dataRootPath = MassBankEnv.get(MassBankEnv.KEY_DATAROOT_PATH);
    if (targetNames.length == 0) {
        return;
    }
    do {
        for (int i = 0; i < targetNames.length; i++) {
            String repoDirName = targetNames[i];
            String dbName = targetDbNames[i];
            logger.info("[SVNService] MSDBUpdater ** " + repoDirName + " -> DB:" + dbName + " **");
            boolean isError = false;
            SVNOperation ope = null;
            try {
                ope = new SVNOperation(repoDirName, SVNOperation.WC_BACKUP_DOWNLOAD);
            } catch (Exception e) {
                e.printStackTrace();
                isError = true;
            }
            if (!isError && ope.isWcModified()) {
                long oldRevision = ope.getWcRevision();
                boolean ret1 = ope.checkout();
            }
            ope.end();
            String workCopyPath = SVNUtils.getWorkCopyPath(repoDirName, SVNOperation.WC_BACKUP_DOWNLOAD);
            boolean ret2 = updateDB(dbName, dataRootPath, workCopyPath);
            try {
                sleep(this.interval * TIME_SEC);
            } catch (Exception e) {
            }
            if (this.isTerminated) {
                return;
            }
        }
    } while (true);
}