Examples with ThreadRunner mcib3d.utils.ThreadRunner used on opensource projects

Example 1 with ThreadRunner

use of mcib3d.utils.ThreadRunner in project mcib3d-core by mcib3d.

the class BinaryMorpho method binaryCloseRad1diag.

private static ImageByte binaryCloseRad1diag(final ImageInt in_, final float thld, int nbCPUs) {
    if (nbCPUs == 0) {
        nbCPUs = ThreadUtil.getNbCpus();
    }
    // TODO: faire sans resize avec un simple décalage des indices
    final ImageInt in = (ImageInt) in_.resize(1, 1, 1);
    final ImageByte max = new ImageByte("max", in.sizeX, in.sizeY, in.sizeZ);
    final ThreadRunner tr = new ThreadRunner(0, max.sizeZ, nbCPUs);
    for (int i = 0; i < tr.threads.length; i++) {
        tr.threads[i] = new Thread(new Runnable() {

            @Override
            public void run() {
                for (int z = tr.ai.getAndIncrement(); z < tr.end; z = tr.ai.getAndIncrement()) {
                    for (int y = 0; y < max.sizeY; y++) {
                        for (int x = 0; x < max.sizeX; x++) {
                            if (maxRad15(in, thld, x, y, z)) {
                                max.pixels[z][x + y * in.sizeX] = (byte) 255;
                            }
                        }
                    }
                }
            }
        });
    }
    tr.startAndJoin();
    final ThreadRunner tr2 = new ThreadRunner(0, in.sizeZ, nbCPUs);
    final ImageByte close = new ImageByte(in.getTitle() + "::close", in.sizeX, in.sizeY, in.sizeZ);
    for (int i = 0; i < tr2.threads.length; i++) {
        tr2.threads[i] = new Thread(new Runnable() {

            @Override
            public void run() {
                for (int z = tr2.ai.getAndIncrement(); z < tr2.end; z = tr2.ai.getAndIncrement()) {
                    for (int y = 0; y < in.sizeY; y++) {
                        for (int x = 0; x < in.sizeX; x++) {
                            if (minRad15(max, 1, x, y, z)) {
                                close.pixels[z][x + y * in.sizeX] = (byte) 255;
                            }
                        }
                    }
                }
            }
        });
    }
    tr2.startAndJoin();
    max.closeImagePlus();
    close.setOffset(in);
    close.setScale(in);
    return close;
}

Example 2 with ThreadRunner

use of mcib3d.utils.ThreadRunner in project mcib3d-core by mcib3d.

the class BinaryMorpho method binaryErodeRad1.

private static ImageByte binaryErodeRad1(final ImageInt in, final float thld, int nbCPUs) {
    if (nbCPUs == 0) {
        nbCPUs = ThreadUtil.getNbCpus();
    }
    final ImageByte min = new ImageByte("min", in.sizeX, in.sizeY, in.sizeZ);
    final ThreadRunner tr = new ThreadRunner(0, in.sizeZ, nbCPUs);
    for (int i = 0; i < tr.threads.length; i++) {
        tr.threads[i] = new Thread(new Runnable() {

            @Override
            public void run() {
                for (int z = tr.ai.getAndIncrement(); z < tr.end; z = tr.ai.getAndIncrement()) {
                    for (int y = 0; y < in.sizeY; y++) {
                        for (int x = 0; x < in.sizeX; x++) {
                            if (minRad1(in, thld, x, y, z)) {
                                min.pixels[z][x + y * in.sizeX] = (byte) 255;
                            }
                        }
                    }
                }
            }
        });
    }
    tr.startAndJoin();
    min.setScale(in);
    min.setOffset(in);
    return min;
}

Example 3 with ThreadRunner

use of mcib3d.utils.ThreadRunner in project mcib3d-core by mcib3d.

the class BinaryMorpho method binaryCloseRad1.

private static ImageByte binaryCloseRad1(final ImageInt in_, final float thld, int nbCPUs) {
    if (nbCPUs == 0) {
        nbCPUs = ThreadUtil.getNbCpus();
    }
    // TODO: faire sans resize avec un simple décalage des indices
    final ImageInt in = (ImageInt) in_.resize(1, 1, 1);
    final ImageByte max = new ImageByte("max", in.sizeX, in.sizeY, in.sizeZ);
    final ThreadRunner tr = new ThreadRunner(0, max.sizeZ, nbCPUs);
    for (int i = 0; i < tr.threads.length; i++) {
        tr.threads[i] = new Thread(new Runnable() {

            @Override
            public void run() {
                for (int z = tr.ai.getAndIncrement(); z < tr.end; z = tr.ai.getAndIncrement()) {
                    for (int y = 0; y < max.sizeY; y++) {
                        for (int x = 0; x < max.sizeX; x++) {
                            if (maxRad1(in, thld, x, y, z)) {
                                max.pixels[z][x + y * in.sizeX] = (byte) 255;
                            }
                        }
                    }
                }
            }
        });
    }
    tr.startAndJoin();
    final ThreadRunner tr2 = new ThreadRunner(0, in.sizeZ, nbCPUs);
    final ImageByte close = new ImageByte(in.getTitle() + "::close", in.sizeX, in.sizeY, in.sizeZ);
    for (int i = 0; i < tr2.threads.length; i++) {
        tr2.threads[i] = new Thread(new Runnable() {

            public void run() {
                for (int z = tr2.ai.getAndIncrement(); z < tr2.end; z = tr2.ai.getAndIncrement()) {
                    for (int y = 0; y < in.sizeY; y++) {
                        for (int x = 0; x < in.sizeX; x++) {
                            if (minRad1(max, 1, x, y, z)) {
                                close.pixels[z][x + y * in.sizeX] = (byte) 255;
                            }
                        }
                    }
                }
            }
        });
    }
    tr2.startAndJoin();
    max.closeImagePlus();
    close.setOffset(in);
    close.setScale(in);
    return close;
}

Example 4 with ThreadRunner

use of mcib3d.utils.ThreadRunner in project mcib3d-core by mcib3d.

the class BinaryMorpho method binaryOpenRad1.

private static ImageByte binaryOpenRad1(final ImageInt in, final float thld, int nbCPUs) {
    if (nbCPUs == 0) {
        nbCPUs = ThreadUtil.getNbCpus();
    }
    final ImageByte min = new ImageByte("min", in.sizeX, in.sizeY, in.sizeZ);
    final ThreadRunner tr = new ThreadRunner(0, in.sizeZ, nbCPUs);
    for (int i = 0; i < tr.threads.length; i++) {
        tr.threads[i] = new Thread(new Runnable() {

            @Override
            public void run() {
                for (int z = tr.ai.getAndIncrement(); z < tr.end; z = tr.ai.getAndIncrement()) {
                    for (int y = 0; y < in.sizeY; y++) {
                        for (int x = 0; x < in.sizeX; x++) {
                            if (minRad1(in, thld, x, y, z)) {
                                min.pixels[z][x + y * in.sizeX] = (byte) 255;
                            }
                        }
                    }
                }
            }
        });
    }
    tr.startAndJoin();
    final ImageByte open = new ImageByte(in.getTitle() + "::open", in.sizeX, in.sizeY, in.sizeZ);
    final ThreadRunner tr2 = new ThreadRunner(0, in.sizeZ, nbCPUs);
    for (int i = 0; i < tr2.threads.length; i++) {
        tr2.threads[i] = new Thread(new Runnable() {

            @Override
            public void run() {
                for (int z = tr2.ai.getAndIncrement(); z < tr2.end; z = tr2.ai.getAndIncrement()) {
                    for (int y = 0; y < in.sizeY; y++) {
                        for (int x = 0; x < in.sizeX; x++) {
                            if (maxRad1(min, 1, x, y, z)) {
                                open.pixels[z][x + y * in.sizeX] = (byte) 255;
                            }
                        }
                    }
                }
            }
        });
    }
    tr2.startAndJoin();
    min.closeImagePlus();
    open.setScale(in);
    open.setOffset(in);
    return open;
}

Example 5 with ThreadRunner

use of mcib3d.utils.ThreadRunner in project mcib3d-core by mcib3d.

the class BinaryMorpho method binaryDilateRad1.

private static ImageByte binaryDilateRad1(final ImageInt in_, final float thld, int nbCPUs) {
    if (nbCPUs == 0) {
        nbCPUs = ThreadUtil.getNbCpus();
    }
    final ImageInt in = (ImageInt) in_.resize(1, 1, 1);
    final ImageByte max = new ImageByte("max", in.sizeX, in.sizeY, in.sizeZ);
    final ThreadRunner tr = new ThreadRunner(0, in.sizeZ, nbCPUs);
    for (int i = 0; i < tr.threads.length; i++) {
        tr.threads[i] = new Thread(new Runnable() {

            @Override
            public void run() {
                for (int z = tr.ai.getAndIncrement(); z < tr.end; z = tr.ai.getAndIncrement()) {
                    for (int y = 0; y < in.sizeY; y++) {
                        for (int x = 0; x < in.sizeX; x++) {
                            if (maxRad1(in, thld, x, y, z)) {
                                max.pixels[z][x + y * in.sizeX] = (byte) 255;
                            }
                        }
                    }
                }
            }
        });
    }
    tr.startAndJoin();
    max.setScale(in);
    max.setOffset(in);
    return max;
}