Examples with FhirExternalSystem net.geoprism.registry.graph.FhirExternalSystem used on opensource projects

Example 1 with FhirExternalSystem

use of net.geoprism.registry.graph.FhirExternalSystem in project geoprism-registry by terraframe.

the class FhirExportJob method execute.

@Override
public void execute(ExecutionContext executionContext) throws Throwable {
    NotificationFacade.queue(new GlobalNotificationMessage(MessageType.PUBLISH_JOB_CHANGE, null));
    FhirExternalSystem system = this.getExternalSystem();
// this.getVersion().exportToFhir(system, this.getImplementation());
}

Example 2 with FhirExternalSystem

use of net.geoprism.registry.graph.FhirExternalSystem in project geoprism-registry by terraframe.

the class DHIS2FeatureService method getSystemCapabilities.

@Request(RequestType.SESSION)
public JsonObject getSystemCapabilities(String sessionId, String systemJSON) {
    JsonObject capabilities = new JsonObject();
    JsonObject jo = JsonParser.parseString(systemJSON).getAsJsonObject();
    ExternalSystem system = ExternalSystem.desieralize(jo);
    if (system instanceof DHIS2ExternalSystem) {
        DHIS2ExternalSystem dhis2System = (DHIS2ExternalSystem) system;
        DHIS2TransportServiceIF dhis2 = getTransportService(dhis2System);
        String version = dhis2.getVersionRemoteServer();
        if (ArrayUtils.contains(DHIS2FeatureService.OAUTH_INCOMPATIBLE_VERSIONS, version)) {
            capabilities.addProperty("oauth", false);
        } else {
            capabilities.addProperty("oauth", true);
        }
    } else if (system instanceof FhirExternalSystem) {
        capabilities.addProperty("oauth", true);
    } else {
        capabilities.addProperty("oauth", false);
    }
    return capabilities;
}

Example 3 with FhirExternalSystem

use of net.geoprism.registry.graph.FhirExternalSystem in project geoprism-registry by terraframe.

the class FhirExportSynchronizationManager method synchronize.

public void synchronize() {
    final FhirExternalSystem system = (FhirExternalSystem) this.config.getSystem();
    try (FhirConnection connection = FhirConnectionFactory.get(system)) {
        SortedSet<FhirSyncLevel> levels = this.config.getLevels();
        int expectedLevel = 0;
        long exportCount = 0;
        for (FhirSyncLevel level : levels) {
            if (level.getLevel() != expectedLevel) {
                throw new ProgrammingErrorException("Unexpected level number [" + level.getLevel() + "].");
            }
            history.appLock();
            history.setWorkProgress((long) expectedLevel);
            history.setExportedRecords(exportCount);
            history.apply();
            ListTypeVersion version = ListTypeVersion.get(level.getVersionId());
            FhirDataPopulator populator = FhirFactory.getPopulator(level.getImplementation());
            ListTypeFhirExporter exporter = new ListTypeFhirExporter(version, connection, populator, true);
            long results = exporter.export();
            exportCount += results;
            expectedLevel++;
        }
        history.appLock();
        history.setWorkTotal((long) expectedLevel);
        history.setWorkProgress((long) expectedLevel);
        history.setExportedRecords(exportCount);
        history.clearStage();
        history.addStage(ExportStage.COMPLETE);
        history.apply();
        NotificationFacade.queue(new GlobalNotificationMessage(MessageType.DATA_EXPORT_JOB_CHANGE, null));
        handleExportErrors();
    } catch (Exception e) {
        throw new HttpError(e);
    }
}

Example 4 with FhirExternalSystem

use of net.geoprism.registry.graph.FhirExternalSystem in project geoprism-registry by terraframe.

the class FhirExportSynchronizationManager method writeToFile.

public File writeToFile() throws IOException {
    final FhirExternalSystem system = (FhirExternalSystem) this.config.getSystem();
    try (FhirConnection connection = FhirConnectionFactory.get(system)) {
        String name = SessionPredicate.generateId();
        File root = new File(new File(VaultProperties.getPath("vault.default"), "files"), name);
        root.mkdirs();
        Bundle bundle = this.generateBundle(connection);
        FhirContext ctx = FhirContext.forR4();
        IParser parser = ctx.newJsonParser();
        try {
            parser.encodeResourceToWriter(bundle, new FileWriter(new File(root, "bundle.json")));
        } catch (DataFormatException | IOException e) {
            throw new ProgrammingErrorException(e);
        }
        return root;
    } catch (Exception e) {
        throw new HttpError(e);
    }
}

Example 5 with FhirExternalSystem

use of net.geoprism.registry.graph.FhirExternalSystem in project geoprism-registry by terraframe.

the class FhirImportTest method createExternalSystem.

@Request
private FhirExternalSystem createExternalSystem() {
    FhirExternalSystem system = new FhirExternalSystem();
    system.setId("FHIRImportTest");
    system.setOrganization(USATestData.ORG_NPS.getServerObject());
    system.getEmbeddedComponent(ExternalSystem.LABEL).setValue("defaultLocale", "Test");
    system.getEmbeddedComponent(ExternalSystem.DESCRIPTION).setValue("defaultLocale", "Test");
    system.setUrl("localhost:8080/fhir");
    system.setSystem("localhost");
    system.apply();
    return system;
}