Examples with BooleanType net.imglib2.type.BooleanType used on opensource projects

Example 1 with BooleanType

use of net.imglib2.type.BooleanType in project imagej-ops by imagej.

the class BoxCount method countTranslatedGrids.

/**
 * Count foreground sections in all grids created from the translations
 *
 * @param input N-dimensional binary interval
 * @param translations Stream of translation coordinates in n-dimensions
 * @param sizes Sizes of the interval's dimensions in pixels
 * @param sectionSize Size of a section in the grids
 * @return Foreground sections counted in each grid
 */
private static <B extends BooleanType<B>> LongStream countTranslatedGrids(final RandomAccessibleInterval<B> input, final Stream<long[]> translations, final long[] sizes, final long sectionSize) {
    final int lastDimension = sizes.length - 1;
    final LongType foreground = new LongType();
    final long[] sectionPosition = new long[sizes.length];
    return translations.mapToLong(gridOffset -> {
        foreground.setZero();
        Arrays.fill(sectionPosition, 0);
        countGrid(input, lastDimension, sizes, gridOffset, sectionPosition, sectionSize, foreground);
        return foreground.get();
    });
}

Example 2 with BooleanType

use of net.imglib2.type.BooleanType in project imagej-ops by imagej.

the class BoxCount method sectionView.

/**
 * Creates a {@link net.imglib2.View} of the given grid section in the
 * interval
 * <p>
 * Fits the view inside the bounds of the interval.
 * </p>
 *
 * @param interval An n-dimensional interval with binary elements
 * @param sizes Sizes of the interval's dimensions
 * @param coordinates Starting coordinates of the section
 * @param sectionSize Size of the section (n * n * ... n)
 * @return A view of the interval spanning n pixels in each dimension from the
 *         coordinates. Null if view couldn't be set inside the interval
 */
private static <B extends BooleanType<B>> IntervalView<B> sectionView(final RandomAccessibleInterval<B> interval, final long[] sizes, final long[] coordinates, final long sectionSize) {
    final int n = sizes.length;
    final long[] startPosition = IntStream.range(0, n).mapToLong(i -> Math.max(0, coordinates[i])).toArray();
    final long[] endPosition = IntStream.range(0, n).mapToLong(i -> Math.min((sizes[i] - 1), (coordinates[i] + sectionSize - 1))).toArray();
    final boolean badBox = IntStream.range(0, n).anyMatch(d -> (startPosition[d] >= sizes[d]) || (endPosition[d] < 0) || (endPosition[d] < startPosition[d]));
    if (badBox) {
        return null;
    }
    final BoundingBox box = new BoundingBox(n);
    box.update(startPosition);
    box.update(endPosition);
    return Views.offsetInterval(interval, box);
}