Examples with ARGBType net.imglib2.type.numeric.ARGBType used on opensource projects

Example 1 with ARGBType

use of net.imglib2.type.numeric.ARGBType in project TrakEM2 by trakem2.

the class LinearIntensityMap method mapARGB.

protected static final <T extends RealType<T>> void mapARGB(final IterableInterval<ARGBType> image, final IterableInterval<RealComposite<T>> coefficients) {
    final Cursor<ARGBType> cs = image.cursor();
    final Cursor<RealComposite<T>> ct = coefficients.cursor();
    while (cs.hasNext()) {
        final RealComposite<T> t = ct.next();
        final double alpha = t.get(0).getRealDouble();
        final double beta = t.get(1).getRealDouble();
        final ARGBType s = cs.next();
        final int argb = s.get();
        final int a = ((argb >> 24) & 0xff);
        final double r = ((argb >> 16) & 0xff) * alpha + beta;
        final double g = ((argb >> 8) & 0xff) * alpha + beta;
        final double b = (argb & 0xff) * alpha + beta;
        s.set((a << 24) | ((r < 0 ? 0 : r > 255 ? 255 : (int) (r + 0.5)) << 16) | ((g < 0 ? 0 : g > 255 ? 255 : (int) (g + 0.5)) << 8) | (b < 0 ? 0 : b > 255 ? 255 : (int) (b + 0.5)));
    }
}

Example 2 with ARGBType

use of net.imglib2.type.numeric.ARGBType in project TrakEM2 by trakem2.

the class LinearIntensityMap method main.

public static void main(final String[] args) {
    new ImageJ();
    final double[] coefficients = new double[] { 0, 2, 4, 8, 1, 1, 1, 1, 1, 10, 5, 1, 1, 1, 1, 1, 0, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 110, 120, 130, 140, 150 };
    final LinearIntensityMap<DoubleType> transform = new LinearIntensityMap<DoubleType>(ArrayImgs.doubles(coefficients, 4, 4, 2));
    // final ImagePlus imp = new ImagePlus( "http://upload.wikimedia.org/wikipedia/en/2/24/Lenna.png" );
    final ImagePlus imp1 = new ImagePlus("http://fly.mpi-cbg.de/~saalfeld/Pictures/norway.jpg");
    final ArrayImg<FloatType, FloatArray> image1 = ArrayImgs.floats((float[]) imp1.getProcessor().convertToFloatProcessor().getPixels(), imp1.getWidth(), imp1.getHeight());
    final ArrayImg<UnsignedByteType, ByteArray> image2 = ArrayImgs.unsignedBytes((byte[]) imp1.getProcessor().convertToByteProcessor().getPixels(), imp1.getWidth(), imp1.getHeight());
    final ArrayImg<UnsignedShortType, ShortArray> image3 = ArrayImgs.unsignedShorts((short[]) imp1.getProcessor().convertToShortProcessor().getPixels(), imp1.getWidth(), imp1.getHeight());
    final ArrayImg<ARGBType, IntArray> image4 = ArrayImgs.argbs((int[]) imp1.getProcessor().getPixels(), imp1.getWidth(), imp1.getHeight());
    ImageJFunctions.show(ArrayImgs.doubles(coefficients, 4, 4, 2));
    transform.run(image1);
    transform.run(image2);
    transform.run(image3);
    transform.run(image4);
    ImageJFunctions.show(image1);
    ImageJFunctions.show(image2);
    ImageJFunctions.show(image3);
    ImageJFunctions.show(image4);
}

Example 3 with ARGBType

use of net.imglib2.type.numeric.ARGBType in project TrakEM2 by trakem2.

the class LinearIntensityMap method run.

@SuppressWarnings({ "rawtypes", "unchecked" })
public <S extends NumericType<S>> void run(final RandomAccessibleInterval<S> image) {
    assert image.numDimensions() == dimensions.numDimensions() : "Number of dimensions do not match.";
    final double[] s = new double[dimensions.numDimensions()];
    for (int d = 0; d < s.length; ++d) s[d] = image.dimension(d) / dimensions.dimension(d);
    final Scale scale = new Scale(s);
    // System.out.println( "translation-n " + translation.numDimensions() );
    final RandomAccessibleInterval<RealComposite<T>> stretchedCoefficients = Views.offsetInterval(Views.raster(RealViews.transform(RealViews.transform(coefficients, translation), scale)), image);
    /* decide on type which mapping to use */
    final S t = image.randomAccess().get();
    if (ARGBType.class.isInstance(t))
        mapARGB(Views.flatIterable((RandomAccessibleInterval<ARGBType>) image), Views.flatIterable(stretchedCoefficients));
    else if (RealComposite.class.isInstance(t))
        mapComposite(Views.flatIterable((RandomAccessibleInterval) image), Views.flatIterable(stretchedCoefficients));
    else if (RealType.class.isInstance(t)) {
        final RealType<?> r = (RealType) t;
        if (r.getMinValue() > -Double.MAX_VALUE || r.getMaxValue() < Double.MAX_VALUE)
            // TODO Bug in javac does not enable cast from RandomAccessibleInterval< S > to RandomAccessibleInterval< RealType >, remove when fixed
            mapCrop(Views.flatIterable((RandomAccessibleInterval<RealType>) (Object) image), Views.flatIterable(stretchedCoefficients));
        else
            // TODO Bug in javac does not enable cast from RandomAccessibleInterval< S > to RandomAccessibleInterval< RealType >, remove when fixed
            map(Views.flatIterable((RandomAccessibleInterval<RealType>) (Object) image), Views.flatIterable(stretchedCoefficients));
    }
}