Examples with DBFrame net.sf.mzmine.modules.peaklistmethods.identification.sirius.table.db.DBFrame used on opensource projects

Example 1 with DBFrame

use of net.sf.mzmine.modules.peaklistmethods.identification.sirius.table.db.DBFrame in project mzmine2 by mzmine.

the class ResultWindow method actionPerformed.

public void actionPerformed(ActionEvent e) {
    String command = e.getActionCommand();
    if (command.equals("ADD")) {
        int index = compoundsTable.getSelectedRow();
        if (index < 0) {
            MZmineCore.getDesktop().displayMessage(this, "Select one result to add as compound identity");
            return;
        }
        index = compoundsTable.convertRowIndexToModel(index);
        peakListRow.addPeakIdentity(listElementModel.getCompoundAt(index), false);
        // Notify the GUI about the change in the project
        MZmineCore.getProjectManager().getCurrentProject().notifyObjectChanged(peakListRow, false);
        // Repaint the window to reflect the change in the feature list
        MZmineCore.getDesktop().getMainWindow().repaint();
        dispose();
    }
    if (command.equals("COPY_SMILES")) {
        int row = compoundsTable.getSelectedRow();
        if (row < 0) {
            MZmineCore.getDesktop().displayMessage(this, "Select one result to copy SMILES value");
            return;
        }
        int realRow = compoundsTable.convertRowIndexToModel(row);
        String smiles = listElementModel.getCompoundAt(realRow).getSMILES();
        copyToClipboard(smiles, "Selected compound does not contain identified SMILES");
    }
    if (command.equals("COPY_FORMULA")) {
        int row = compoundsTable.getSelectedRow();
        if (row < 0) {
            MZmineCore.getDesktop().displayMessage(this, "Select one result to copy FORMULA value");
            return;
        }
        int realRow = compoundsTable.convertRowIndexToModel(row);
        String formula = listElementModel.getCompoundAt(realRow).getStringFormula();
        copyToClipboard(formula, "Formula value is null...");
    }
    if (command.equals("DB_LIST")) {
        int row = compoundsTable.getSelectedRow();
        if (row < 0) {
            MZmineCore.getDesktop().displayMessage(this, "Select one row to display the list DBs");
            return;
        }
        int realRow = compoundsTable.convertRowIndexToModel(row);
        final SiriusCompound compound = listElementModel.getCompoundAt(realRow);
        DBFrame dbFrame = new DBFrame(compound, browse);
        dbFrame.setVisible(true);
    }
}