Examples with ScanSortMode net.sf.mzmine.util.scans.sorting.ScanSortMode used on opensource projects

Example 1 with ScanSortMode

use of net.sf.mzmine.util.scans.sorting.ScanSortMode in project mzmine2 by mzmine.

the class MSMSLibrarySubmissionWindow method addListener.

private void addListener() {
    // listen for changes in masslist selection and preprocessing
    MassListComponent mc = getMassListComponent();
    mc.addDocumentListener(new DelayedDocumentListener(e -> updateSettingsOnAllSelectors()));
    DoubleComponent nc = getNoiseLevelComponent();
    nc.addDocumentListener(new DelayedDocumentListener(e -> updateSettingsOnAllSelectors()));
    IntegerComponent minc = getMinSignalComponent();
    minc.addDocumentListener(new DelayedDocumentListener(e -> updateSettingsOnAllSelectors()));
    ComboComponent<ScanSortMode> sortc = getComboSortMode();
    sortc.addItemListener(e -> updateSortModeOnAllSelectors());
    IntegerComponent mslevel = getMSLevelComponent();
    mslevel.addDocumentListener(new DelayedDocumentListener(e -> {
        updateParameterSetFromComponents();
        Integer level = paramMeta.getParameter(LibraryMetaDataParameters.MS_LEVEL).getValue();
        setFragmentScan(level != null && level > 1);
    }));
}

Example 2 with ScanSortMode

use of net.sf.mzmine.util.scans.sorting.ScanSortMode in project mzmine2 by mzmine.

the class MSMSLibrarySubmissionWindow method updateAllChartSelectors.

/**
 * Create new scan selector panels
 */
public void updateAllChartSelectors() {
    group = new ChartGroup(showCrosshair, showCrosshair, true, false);
    pnCharts.removeAll();
    GridLayout layout = new GridLayout(0, 1);
    pnCharts.setLayout(layout);
    if (checkInput()) {
        Integer minSignals = paramSubmit.getParameter(LibrarySubmitParameters.minSignals).getValue();
        Double noiseLevel = paramSubmit.getParameter(LibrarySubmitParameters.noiseLevel).getValue();
        String massListName = paramSubmit.getParameter(LibrarySubmitParameters.massList).getValue();
        if (minSignals != null && noiseLevel != null && massListName != null) {
            ScanSortMode sort = (ScanSortMode) getComboSortMode().getSelectedItem();
            if (rows != null) {
                // create MS2 of all rows
                for (int i = 0; i < rows.length; i++) {
                    PeakListRow row = rows[i];
                    ScanSelectPanel pn = new ScanSelectPanel(row, sort, noiseLevel, minSignals, massListName);
                    pnScanSelect[i] = pn;
                    pn.addChartChangedListener(chart -> regroupCharts());
                    pnCharts.add(pn);
                    // add to group
                    EChartPanel c = pn.getChart();
                    if (c != null) {
                        group.add(new ChartViewWrapper(c));
                    }
                }
            } else if (scanList != null) {
                // all selectors of scanlist
                for (int i = 0; i < scanList.size(); i++) {
                    Scan[] scansEntry = scanList.get(i);
                    ScanSelectPanel pn = new ScanSelectPanel(scansEntry, sort, noiseLevel, minSignals, massListName);
                    pnScanSelect[i] = pn;
                    pn.addChartChangedListener(chart -> regroupCharts());
                    pnCharts.add(pn);
                    // add to group
                    EChartPanel c = pn.getChart();
                    if (c != null) {
                        group.add(new ChartViewWrapper(c));
                    }
                }
            }
        }
        streamSelection().forEach(pn -> {
            pn.setFragmentScan(isFragmentScan);
            // only show exclude/check button if more than 1 entry
            pn.setShowExcludeButton(pnScanSelect.length > 1);
        });
    }
    pnCharts.revalidate();
    pnCharts.repaint();
}