Examples with LoggingErrorHandler nl.knaw.huygens.timbuctoo.rml.LoggingErrorHandler used on opensource projects

Example 1 with LoggingErrorHandler

use of nl.knaw.huygens.timbuctoo.rml.LoggingErrorHandler in project timbuctoo by HuygensING.

the class RmlExecutorService method execute.

public void execute(Consumer<String> statusUpdate) {
    transactionEnforcer.execute(timbuctooActions -> {
        timbuctooActions.setVrePublishState(vreName, Vre.PublishState.MAPPING_EXECUTION);
        timbuctooActions.rdfCleanImportSession(vreName, session -> {
            final TripleImporter importer = new TripleImporter(graphWrapper, vreName, session);
            // first save the archetype mappings
            AtomicLong tripleCount = new AtomicLong(0);
            AtomicLong curtime = new AtomicLong(Clock.systemUTC().millis());
            // create the links from the collection entities to the archetypes
            model.listStatements(null, model.createProperty("http://www.w3.org/2000/01/rdf-schema#subClassOf"), (String) null).forEachRemaining(statement -> {
                importer.importTriple(true, new Triple(statement.getSubject().asNode(), statement.getPredicate().asNode(), statement.getObject().asNode()));
                reportTripleCount(tripleCount, curtime, statusUpdate);
            });
            // generate and import rdf
            rmlMappingDocument.execute(new LoggingErrorHandler()).forEach((quad) -> {
                reportTripleCount(tripleCount, curtime, statusUpdate);
                Node object;
                final QuadPart sourceObject = quad.getObject();
                if (sourceObject.getLiteralLanguage().isPresent()) {
                    object = createLiteral(sourceObject.getContent(), sourceObject.getLiteralLanguage().get());
                } else if (sourceObject.getLiteralType().isPresent()) {
                    object = createLiteral(sourceObject.getContent(), new BaseDatatype(sourceObject.getLiteralType().get()));
                } else if (sourceObject instanceof RdfBlankNode) {
                    object = NodeFactory.createBlankNode(sourceObject.getContent());
                } else {
                    object = NodeFactory.createURI(sourceObject.getContent());
                }
                importer.importTriple(true, new Triple(quad.getSubject() instanceof RdfBlankNode ? NodeFactory.createBlankNode(quad.getSubject().getContent()) : NodeFactory.createURI(quad.getSubject().getContent()), NodeFactory.createURI(quad.getPredicate().getContent()), object));
            });
            reportTripleCount(tripleCount, curtime, statusUpdate);
            // Give the collections a proper name
            graphWrapper.getGraph().traversal().V().hasLabel(Vre.DATABASE_LABEL).has(Vre.VRE_NAME_PROPERTY_NAME, vreName).out(HAS_COLLECTION_RELATION_NAME).forEachRemaining(v -> {
                if (!v.property(COLLECTION_LABEL_PROPERTY_NAME).isPresent()) {
                    String typeName = v.value(ENTITY_TYPE_NAME_PROPERTY_NAME);
                    v.property(COLLECTION_LABEL_PROPERTY_NAME, typeName.substring(vreName.length()));
                }
            });
            return commit();
        });
        return commit();
    });
    // FIXME naar importSession.close can be done when the Vres are retrieved via TimbuctooActions
    vres.reload();
}