Examples with DataSet nl.knaw.huygens.timbuctoo.v5.dataset.dto.DataSet used on opensource projects

Example 26 with DataSet

use of nl.knaw.huygens.timbuctoo.v5.dataset.dto.DataSet in project timbuctoo by HuygensING.

the class RawUploadRdfSaverTest method setUp.

@Before
public void setUp() throws Exception {
    rdfSerializer = mock(RdfSerializer.class);
    dataSetMetadata = new BasicDataSetMetaData("userid", "dataset", "http://timbuctoo.huygens.knaw.nl/v5/datasets/userid/dataset", "http://example.org/prefix/", false, false);
    instance = instanceWithRdfSerializer(rdfSerializer, dataSetMetadata);
}

Example 27 with DataSet

use of nl.knaw.huygens.timbuctoo.v5.dataset.dto.DataSet in project timbuctoo by HuygensING.

the class DataSetMetadataMutation method get.

@Override
public Object get(DataFetchingEnvironment env) {
    DataSet dataSet = MutationHelpers.getDataSet(env, dataSetRepository::getDataSet);
    MutationHelpers.checkAdminPermissions(env, dataSet.getMetadata());
    try {
        Map md = env.getArgument("metadata");
        final String baseUri = dataSet.getMetadata().getBaseUri().endsWith("/") ? dataSet.getMetadata().getBaseUri() : dataSet.getMetadata().getBaseUri() + "/";
        addMutation(dataSet, new PredicateMutation().entity(baseUri, this.<String>parseProp(md, "title", v -> replace("http://purl.org/dc/terms/title", value(v))), this.<String>parseProp(md, "description", v -> replace("http://purl.org/dc/terms/description", value(v, MARKDOWN))), this.<String>parseProp(md, "imageUrl", v -> replace("http://xmlns.com/foaf/0.1/depiction", value(v))), this.<String>parseProp(md, "license", v -> replace("http://purl.org/dc/terms/license", subject(v))), this.<Map>parseProp(md, "owner", owner -> getOrCreate("http://purl.org/dc/terms/rightsHolder", baseUri + "rightsHolder", this.<String>parseProp(owner, "name", v -> replace("http://schema.org/name", value(v))), this.<String>parseProp(owner, "email", v -> replace("http://schema.org/email", value(v))))), this.<Map>parseProp(md, "contact", owner -> getOrCreate("http://schema.org/ContactPoint", baseUri + "ContactPoint", this.<String>parseProp(owner, "name", v -> replace("http://schema.org/name", value(v))), this.<String>parseProp(owner, "email", v -> replace("http://schema.org/email", value(v))))), this.<Map>parseProp(md, "provenanceInfo", owner -> getOrCreate("http://purl.org/dc/terms/provenance", baseUri + "Provenance", this.<String>parseProp(owner, "title", v -> replace("http://purl.org/dc/terms/title", value(v))), this.<String>parseProp(owner, "body", v -> replace("http://purl.org/dc/terms/description", value(v, MARKDOWN)))))));
        return new DataSetWithDatabase(dataSet);
    } catch (LogStorageFailedException | InterruptedException | ExecutionException e) {
        throw new RuntimeException(e);
    }
}

Example 28 with DataSet

use of nl.knaw.huygens.timbuctoo.v5.dataset.dto.DataSet in project timbuctoo by HuygensING.

the class ExtendSchemaMutation method get.

@Override
public Object get(DataFetchingEnvironment env) {
    DataSet dataSet = MutationHelpers.getDataSet(env, dataSetRepository::getDataSet);
    MutationHelpers.checkAdminPermissions(env, dataSet.getMetadata());
    final SchemaStore generatedSchema = dataSet.getSchemaStore();
    Map<String, Type> customTypes = new HashMap<>();
    List<ExplicitType> customSchema;
    Map<String, List<ExplicitField>> newCustomSchema = new HashMap<>();
    try {
        String customSchemaString = OBJECT_MAPPER.writeValueAsString(env.getArgument("customSchema"));
        customSchema = OBJECT_MAPPER.readValue(customSchemaString, new TypeReference<List<ExplicitType>>() {
        });
    } catch (IOException e) {
        throw new RuntimeException("Could not parse the schema input");
    }
    for (ExplicitType explicitType : customSchema) {
        customTypes.put(explicitType.getCollectionId(), explicitType.convertToType());
        newCustomSchema.put(explicitType.getCollectionId(), explicitType.getFields());
    }
    Map<String, List<ExplicitField>> existingCustomSchema = dataSet.getCustomSchema();
    Map<String, Type> existingCustomSchemaTypes = new HashMap<>();
    for (Map.Entry<String, List<ExplicitField>> entry : existingCustomSchema.entrySet()) {
        ExplicitType tempExplicitType = new ExplicitType(entry.getKey(), entry.getValue());
        existingCustomSchemaTypes.put(entry.getKey(), tempExplicitType.convertToType());
    }
    MergeSchemas mergeSchemas = new MergeSchemas();
    customTypes = mergeSchemas.mergeSchema(existingCustomSchemaTypes, customTypes);
    MergeExplicitSchemas mergeExplicitSchemas = new MergeExplicitSchemas();
    Map<String, List<ExplicitField>> mergedExplicitSchema = mergeExplicitSchemas.mergeExplicitSchemas(existingCustomSchema, newCustomSchema);
    try {
        dataSet.saveCustomSchema(mergedExplicitSchema);
    } catch (IOException e) {
        LOG.error("Saving the custom schema failed", e);
        throw new RuntimeException(e);
    }
    Map<String, Type> mergedSchema = mergeSchemas.mergeSchema(generatedSchema.getStableTypes(), customTypes);
    for (Map.Entry<String, Type> customType : customTypes.entrySet()) {
        if (!mergedSchema.containsKey(customType.getKey())) {
            return ImmutableMap.of("message", "Schema extension was unsuccessful.");
        }
    }
    return ImmutableMap.of("message", "Schema extended successfully.");
}

Example 29 with DataSet

use of nl.knaw.huygens.timbuctoo.v5.dataset.dto.DataSet in project timbuctoo by HuygensING.

the class IndexConfigMutation method get.

@Override
public Object get(DataFetchingEnvironment env) {
    String collectionUri = env.getArgument("collectionUri");
    Object indexConfig = env.getArgument("indexConfig");
    DataSet dataSet = MutationHelpers.getDataSet(env, dataSetRepository::getDataSet);
    MutationHelpers.checkAdminPermissions(env, dataSet.getMetadata());
    try {
        MutationHelpers.addMutation(dataSet, new PredicateMutation().entity(collectionUri, replace(TIM_HASINDEXERCONFIG, value(OBJECT_MAPPER.writeValueAsString(indexConfig)))));
        return indexConfig;
    } catch (LogStorageFailedException | InterruptedException | ExecutionException | JsonProcessingException e) {
        throw new RuntimeException(e);
    }
}

Example 30 with DataSet

use of nl.knaw.huygens.timbuctoo.v5.dataset.dto.DataSet in project timbuctoo by HuygensING.

the class MakePublicMutation method get.

@Override
public Object get(DataFetchingEnvironment env) {
    User user = MutationHelpers.getUser(env);
    DataSet dataSet = MutationHelpers.getDataSet(env, dataSetRepository::getDataSet);
    try {
        dataSetRepository.publishDataSet(user, dataSet.getMetadata().getOwnerId(), dataSet.getMetadata().getDataSetId());
    } catch (DataSetPublishException e) {
        LOG.error("Failed to publish data set", e);
        throw new RuntimeException("Failed to publish data set");
    }
    return new DataSetWithDatabase(dataSet);
}