Examples with DataSet nl.knaw.huygens.timbuctoo.v5.dataset.dto.DataSet used on opensource projects

Example 41 with DataSet

use of nl.knaw.huygens.timbuctoo.v5.dataset.dto.DataSet in project timbuctoo by HuygensING.

the class Import method importData.

@POST
@Produces("application/json")
public Response importData(@HeaderParam("Authorization") String authorization, @QueryParam("forceCreation") boolean forceCreation, ImportData importData) throws DataStoreCreationException {
    final Either<Response, Response> responses = authCheck.getOrCreate(authorization, importData.userId, importData.dataSetId, forceCreation).flatMap(userAndDs -> authCheck.hasAdminAccess(userAndDs.getLeft(), userAndDs.getRight())).map(userAndDs -> {
        final DataSet dataSet = userAndDs.getRight();
        ImportManager importManager = dataSet.getImportManager();
        try {
            LOG.info("Loading files");
            Iterator<RemoteFile> files = resourceSyncFileLoader.loadFiles(importData.source.toString()).iterator();
            LOG.info("Found files '{}'", files.hasNext());
            ResourceSyncResport resourceSyncResport = new ResourceSyncResport();
            while (files.hasNext()) {
                RemoteFile file = files.next();
                MediaType parsedMediatype = MediaType.APPLICATION_OCTET_STREAM_TYPE;
                try {
                    parsedMediatype = MediaType.valueOf(file.getMimeType());
                } catch (IllegalArgumentException e) {
                    LOG.error("Failed to get mediatype", e);
                }
                if (importManager.isRdfTypeSupported(parsedMediatype)) {
                    resourceSyncResport.importedFiles.add(file.getUrl());
                    importManager.addLog(dataSet.getMetadata().getBaseUri(), dataSet.getMetadata().getBaseUri(), file.getUrl().substring(file.getUrl().lastIndexOf('/') + 1), file.getData(), Optional.of(Charsets.UTF_8), parsedMediatype);
                } else {
                    resourceSyncResport.ignoredFiles.add(file.getUrl());
                    importManager.addFile(file.getData(), file.getUrl(), parsedMediatype);
                }
            }
            return Response.ok(resourceSyncResport).build();
        } catch (Exception e) {
            LOG.error("Could not read files to import", e);
            return Response.serverError().build();
        }
    });
    if (responses.isLeft()) {
        return responses.getLeft();
    } else {
        return responses.get();
    }
}

Example 42 with DataSet

use of nl.knaw.huygens.timbuctoo.v5.dataset.dto.DataSet in project timbuctoo by HuygensING.

the class PermissionBasedFieldVisibility method getFieldDefinition.

@Override
public GraphQLFieldDefinition getFieldDefinition(GraphQLFieldsContainer fieldsContainer, String fieldName) {
    Collection<DataSet> dataSets = dataSetRepository.getDataSets();
    Set<String> dataSetNamesWithOutReadPermission = dataSets.stream().filter(dataSet -> !userPermissionCheck.getPermissions(dataSet.getMetadata()).contains(Permission.READ)).map(dataSet -> dataSet.getMetadata().getCombinedId()).collect(Collectors.toSet());
    Iterator<GraphQLFieldDefinition> graphQlFieldDefinitionIterator = fieldsContainer.getFieldDefinitions().iterator();
    while (graphQlFieldDefinitionIterator.hasNext()) {
        GraphQLFieldDefinition graphQlFieldDefinition = graphQlFieldDefinitionIterator.next();
        if (!dataSetNamesWithOutReadPermission.contains(graphQlFieldDefinition.getName()) && graphQlFieldDefinition.getName().equals(fieldName)) {
            return graphQlFieldDefinition;
        }
    }
    return null;
}

Example 43 with DataSet

use of nl.knaw.huygens.timbuctoo.v5.dataset.dto.DataSet in project timbuctoo by HuygensING.

the class PermissionBasedFieldVisibility method getFieldDefinitions.

@Override
public List<GraphQLFieldDefinition> getFieldDefinitions(GraphQLFieldsContainer fieldsContainer) {
    List<GraphQLFieldDefinition> graphQlFieldDefinitions = new ArrayList<>();
    Collection<DataSet> dataSets = dataSetRepository.getDataSets();
    Set<String> dataSetNamesWithOutReadPermission = dataSets.stream().filter(dataSet -> !userPermissionCheck.getPermissions(dataSet.getMetadata()).contains(Permission.READ)).map(dataSet -> dataSet.getMetadata().getCombinedId()).collect(Collectors.toSet());
    Iterator<GraphQLFieldDefinition> graphQlFieldDefinitionIterator = fieldsContainer.getFieldDefinitions().iterator();
    while (graphQlFieldDefinitionIterator.hasNext()) {
        GraphQLFieldDefinition graphQlFieldDefinition = graphQlFieldDefinitionIterator.next();
        if (!dataSetNamesWithOutReadPermission.contains(graphQlFieldDefinition.getName())) {
            graphQlFieldDefinitions.add(graphQlFieldDefinition);
        }
    }
    return graphQlFieldDefinitions;
}

Example 44 with DataSet

use of nl.knaw.huygens.timbuctoo.v5.dataset.dto.DataSet in project timbuctoo by HuygensING.

the class RootQuery method getCollections.

public CollectionMetadataList getCollections(DataSetMetaData input, Optional<User> userOpt) {
    final User user = userOpt.orElse(null);
    final DataSet dataSet = dataSetRepository.getDataSet(user, input.getOwnerId(), input.getDataSetId()).get();
    final TypeNameStore typeNameStore = dataSet.getTypeNameStore();
    final List<CollectionMetadata> colls = dataSet.getSchemaStore().getStableTypes().values().stream().map(x -> {
        return getCollection(dataSet, typeNameStore, x);
    }).collect(Collectors.toList());
    return ImmutableCollectionMetadataList.builder().nextCursor(Optional.empty()).prevCursor(Optional.empty()).items(colls).build();
}

Example 45 with DataSet

use of nl.knaw.huygens.timbuctoo.v5.dataset.dto.DataSet in project timbuctoo by HuygensING.

the class DataSetRepositoryTest method removeDataSetRemovesTheDataSetsAuthorizations.

@Test
public void removeDataSetRemovesTheDataSetsAuthorizations() throws Exception {
    User user = User.create(null, "user");
    final DataSet dataSet = dataSetRepository.createDataSet(user, "dataset");
    DataSetMetaData metadata = dataSet.getMetadata();
    String owner = metadata.getOwnerId();
    given(permissionFetcher.getPermissions(user, metadata)).willReturn(Sets.newHashSet(Permission.ADMIN));
    dataSetRepository.removeDataSet(owner, "dataset", user);
    verify(permissionFetcher).removeAuthorizations(metadata.getCombinedId());
}