Examples with GenericExcitationSource ome.xml.model.GenericExcitationSource used on opensource projects

Example 1 with GenericExcitationSource

use of ome.xml.model.GenericExcitationSource in project bioformats by openmicroscopy.

the class GenericExcitationMapTest method testGenericExcitationSourceMapContent.

@Test
public void testGenericExcitationSourceMapContent() throws Exception {
    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
    DocumentBuilder parser = factory.newDocumentBuilder();
    Document document = parser.newDocument();
    // Produce a valid OME DOM element hierarchy
    Element root = ome.asXMLElement(document);
    SPWModelMock.postProcess(root, document, false);
    OMEModel model = new OMEModelImpl();
    ome = new OME(document.getDocumentElement(), model);
    model.resolveReferences();
    assertNotNull(ome);
    assertEquals(ome.getImage(0).getPixels().getChannel(0).getLightSourceSettings().getID(), "LightSource:0");
    assertNotNull(ome.getInstrument(0).getLightSource(0));
    GenericExcitationSource geSource = (GenericExcitationSource) ome.getInstrument(0).getLightSource(0);
    List<MapPair> dataMap = geSource.getMap();
    assertEquals(6, dataMap.size());
    assertPair(dataMap, 0, "a", "1");
    assertPair(dataMap, 1, "d", "2");
    assertPair(dataMap, 2, "c", "3");
    assertPair(dataMap, 3, "b", "4");
    assertPair(dataMap, 4, "e", "5");
    assertPair(dataMap, 5, "c", "6");
}

Example 2 with GenericExcitationSource

use of ome.xml.model.GenericExcitationSource in project bioformats by openmicroscopy.

the class GenericExcitationMapTest method setUp.

@BeforeClass
public void setUp() throws Exception {
    Instrument instrument = new Instrument();
    instrument.setID("Instrument:0");
    // Add a GenericExcitationSource with an Map
    GenericExcitationSource geSource = new GenericExcitationSource();
    geSource.setID("LightSource:0");
    List<MapPair> dataMap = new ArrayList<MapPair>();
    dataMap.add(new MapPair("a", "1"));
    dataMap.add(new MapPair("d", "2"));
    dataMap.add(new MapPair("c", "3"));
    dataMap.add(new MapPair("b", "4"));
    dataMap.add(new MapPair("e", "5"));
    dataMap.add(new MapPair("c", "6"));
    assertEquals(6, dataMap.size());
    geSource.setMap(dataMap);
    instrument.addLightSource(geSource);
    ome.addInstrument(instrument);
    // Add an Image/Pixels with a LightSourceSettings reference to the
    // GenericExcitationSource on one of its channels.
    Image image = new Image();
    image.setID("Image:0");
    Pixels pixels = new Pixels();
    pixels.setID("Pixels:0");
    Channel channel = new Channel();
    channel.setID("Channel:0");
    LightSourceSettings settings = new LightSourceSettings();
    settings.setID("LightSource:0");
    channel.setLightSourceSettings(settings);
    pixels.addChannel(channel);
    image.setPixels(pixels);
    ome.addImage(image);
}