Examples with ImagingEnvironment ome.xml.model.ImagingEnvironment used on opensource projects

Example 1 with ImagingEnvironment

use of ome.xml.model.ImagingEnvironment in project bioformats by openmicroscopy.

the class ImagingEnvironmentMapTest method setUp.

@BeforeClass
public void setUp() throws Exception {
    // Add an Image/Pixels
    Image image = new Image();
    image.setID("Image:0");
    Pixels pixels = new Pixels();
    pixels.setID("Pixels:0");
    image.setPixels(pixels);
    // Add an ImagingEnvironment with an Map
    ImagingEnvironment imagingEnvironment = new ImagingEnvironment();
    List<MapPair> map = new ArrayList<MapPair>();
    map.add(new MapPair("a", "1"));
    map.add(new MapPair("d", "2"));
    map.add(new MapPair("c", "3"));
    map.add(new MapPair("b", "4"));
    map.add(new MapPair("e", "5"));
    map.add(new MapPair("c", "6"));
    assertEquals(6, map.size());
    imagingEnvironment.setMap(map);
    image.setImagingEnvironment(imagingEnvironment);
    ome.addImage(image);
}

Example 2 with ImagingEnvironment

use of ome.xml.model.ImagingEnvironment in project bioformats by openmicroscopy.

the class ImagingEnvironmentMapTest method testGenericExcitationSourceMapContent.

@Test
public void testGenericExcitationSourceMapContent() throws Exception {
    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
    DocumentBuilder parser = factory.newDocumentBuilder();
    Document document = parser.newDocument();
    // Produce a valid OME DOM element hierarchy
    Element root = ome.asXMLElement(document);
    SPWModelMock.postProcess(root, document, false);
    OMEModel model = new OMEModelImpl();
    ome = new OME(document.getDocumentElement(), model);
    model.resolveReferences();
    assertNotNull(ome);
    assertEquals(ome.getImage(0).getPixels().getID(), "Pixels:0");
    assertNotNull(ome.getImage(0).getImagingEnvironment());
    ImagingEnvironment imagingEnvironment = ome.getImage(0).getImagingEnvironment();
    List<MapPair> dataMap = imagingEnvironment.getMap();
    assertEquals(6, dataMap.size());
    assertPair(dataMap, 0, "a", "1");
    assertPair(dataMap, 1, "d", "2");
    assertPair(dataMap, 2, "c", "3");
    assertPair(dataMap, 3, "b", "4");
    assertPair(dataMap, 4, "e", "5");
    assertPair(dataMap, 5, "c", "6");
}