Examples with ListAnnotation ome.xml.model.ListAnnotation used on opensource projects

Example 1 with ListAnnotation

use of ome.xml.model.ListAnnotation in project bioformats by openmicroscopy.

the class InOutCurrentTest method testValidImageAnnotation.

@Test(dependsOnMethods = { "testValidImageNode" })
public void testValidImageAnnotation() {
    Annotation n = ome.getImage(0).getLinkedAnnotation(0);
    assertNotNull(n);
    assertEquals(ListAnnotation.class, n.getClass());
    ListAnnotation l = (ListAnnotation) n;
    assertEquals(l.getID(), IMAGE_LIST_ANNOTATION_ID);
    assertEquals(l.getNamespace(), GENERAL_ANNOTATION_NAMESPACE);
    Annotation n2 = l.getLinkedAnnotation(0);
    assertEquals(BooleanAnnotation.class, n2.getClass());
    BooleanAnnotation b = (BooleanAnnotation) n2;
    assertEquals(b.getValue(), IMAGE_ANNOTATION_VALUE);
    assertEquals(b.getNamespace(), GENERAL_ANNOTATION_NAMESPACE);
    assertEquals(b.getID(), IMAGE_ANNOTATION_ID);
}

Example 2 with ListAnnotation

use of ome.xml.model.ListAnnotation in project bioformats by openmicroscopy.

the class ObjectBasedOMEModelMock method makeImage.

private Image makeImage() {
    // Create <Image/>
    Image image = new Image();
    image.setID(InOutCurrentTest.IMAGE_ID);
    ListAnnotation listAnnotation = new ListAnnotation();
    listAnnotation.setID(InOutCurrentTest.IMAGE_LIST_ANNOTATION_ID);
    listAnnotation.setNamespace(InOutCurrentTest.GENERAL_ANNOTATION_NAMESPACE);
    annotations.addListAnnotation(listAnnotation);
    BooleanAnnotation annotation = new BooleanAnnotation();
    annotation.setID(InOutCurrentTest.IMAGE_ANNOTATION_ID);
    annotation.setValue(InOutCurrentTest.IMAGE_ANNOTATION_VALUE);
    annotation.setNamespace(InOutCurrentTest.GENERAL_ANNOTATION_NAMESPACE);
    listAnnotation.linkAnnotation(annotation);
    image.linkAnnotation(listAnnotation);
    annotations.addBooleanAnnotation(annotation);
    // Create <Pixels/>
    Pixels pixels = new Pixels();
    pixels.setID(InOutCurrentTest.PIXELS_ID);
    pixels.setSizeX(new PositiveInteger(InOutCurrentTest.SIZE_X));
    pixels.setSizeY(new PositiveInteger(InOutCurrentTest.SIZE_Y));
    pixels.setSizeZ(new PositiveInteger(InOutCurrentTest.SIZE_Z));
    pixels.setSizeC(new PositiveInteger(InOutCurrentTest.SIZE_C));
    pixels.setSizeT(new PositiveInteger(InOutCurrentTest.SIZE_T));
    pixels.setDimensionOrder(InOutCurrentTest.DIMENSION_ORDER);
    pixels.setType(InOutCurrentTest.PIXEL_TYPE);
    // Create <TiffData/>
    TiffData tiffData = new TiffData();
    // Create <UUID/>
    UUID uuid = new UUID();
    uuid.setValue(InOutCurrentTest.TIFF_DATA_UUID);
    tiffData.setUUID(uuid);
    pixels.addTiffData(tiffData);
    // Create <Channel/> under <Pixels/>
    for (int i = 0; i < InOutCurrentTest.SIZE_C; i++) {
        Channel channel = new Channel();
        channel.setID("Channel:" + i);
        if (i == 0) {
            XMLAnnotation channelAnnotation = new XMLAnnotation();
            channelAnnotation.setID(InOutCurrentTest.CHANNEL_ANNOTATION_ID);
            channelAnnotation.setValue(InOutCurrentTest.CHANNEL_ANNOTATION_VALUE);
            channelAnnotation.setNamespace(InOutCurrentTest.GENERAL_ANNOTATION_NAMESPACE);
            channel.linkAnnotation(channelAnnotation);
            annotations.addXMLAnnotation(channelAnnotation);
        }
        pixels.addChannel(channel);
    }
    // Put <Pixels/> under <Image/>
    image.setPixels(pixels);
    return image;
}