Examples with MapAnnotation ome.xml.model.MapAnnotation used on opensource projects

Example 1 with MapAnnotation

use of ome.xml.model.MapAnnotation in project bioformats by openmicroscopy.

the class MapAnnotationTest method setUp.

@BeforeClass
public void setUp() throws Exception {
    // Add an Image/Pixels
    Image image = new Image();
    image.setID("Image:0");
    Pixels pixels = new Pixels();
    pixels.setID("Pixels:0");
    image.setPixels(pixels);
    // Add a Map Annotation
    List<MapPair> map = new ArrayList<MapPair>();
    map.add(new MapPair("a", "1"));
    map.add(new MapPair("d", "2"));
    map.add(new MapPair("c", "3"));
    map.add(new MapPair("b", "4"));
    map.add(new MapPair("e", "5"));
    map.add(new MapPair("c", "6"));
    MapAnnotation mapAnnotation = new MapAnnotation();
    mapAnnotation.setID("Annotation:0");
    mapAnnotation.setValue(map);
    StructuredAnnotations structuredAnnotations = new StructuredAnnotations();
    structuredAnnotations.addMapAnnotation(mapAnnotation);
    ome.setStructuredAnnotations(structuredAnnotations);
    image.linkAnnotation(mapAnnotation);
    ome.addImage(image);
}

Example 2 with MapAnnotation

use of ome.xml.model.MapAnnotation in project bioformats by openmicroscopy.

the class MapAnnotationTest method testMapAnnotationValueContent.

@Test
public void testMapAnnotationValueContent() throws Exception {
    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
    DocumentBuilder parser = factory.newDocumentBuilder();
    Document document = parser.newDocument();
    // Produce a valid OME DOM element hierarchy
    Element root = ome.asXMLElement(document);
    SPWModelMock.postProcess(root, document, false);
    OMEModel model = new OMEModelImpl();
    ome = new OME(document.getDocumentElement(), model);
    model.resolveReferences();
    assertNotNull(ome);
    assertEquals(ome.getImage(0).getPixels().getID(), "Pixels:0");
    assertNotNull(ome.getImage(0).getLinkedAnnotation(0));
    MapAnnotation mapAnnotation = (MapAnnotation) ome.getImage(0).getLinkedAnnotation(0);
    List<MapPair> dataMap = mapAnnotation.getValue();
    assertEquals(6, dataMap.size());
    assertEquals("a", dataMap.get(0).getName());
    assertEquals("1", dataMap.get(0).getValue());
    assertEquals("d", dataMap.get(1).getName());
    assertEquals("2", dataMap.get(1).getValue());
    assertEquals("c", dataMap.get(2).getName());
    assertEquals("3", dataMap.get(2).getValue());
    assertEquals("b", dataMap.get(3).getName());
    assertEquals("4", dataMap.get(3).getValue());
    assertEquals("e", dataMap.get(4).getName());
    assertEquals("5", dataMap.get(4).getValue());
    assertEquals("c", dataMap.get(5).getName());
    assertEquals("6", dataMap.get(5).getValue());
}