Examples with CRFBean org.akaza.openclinica.bean.admin.CRFBean used on opensource projects

Example 11 with CRFBean

use of org.akaza.openclinica.bean.admin.CRFBean in project OpenClinica by OpenClinica.

the class ListEventsForSubjectTableFactory method getCrfs.

@SuppressWarnings("unchecked")
private ArrayList<CRFBean> getCrfs(StudyEventDefinitionBean eventDefinition) {
    if (this.crfBeans == null) {
        crfBeans = new ArrayList<CRFBean>();
        eventDefinitionCrfs = new ArrayList<EventDefinitionCRFBean>();
        for (EventDefinitionCRFBean eventDefinitionCrf : (List<EventDefinitionCRFBean>) getEventDefintionCRFDAO().findAllActiveByEventDefinitionId(eventDefinition.getId())) {
            CRFBean crfBean = (CRFBean) getCrfDAO().findByPK(eventDefinitionCrf.getCrfId());
            ArrayList<CRFVersionBean> crfVersions = (ArrayList<CRFVersionBean>) getCrfVersionDAO().findAllByCRFId(eventDefinitionCrf.getCrfId());
            crfBean.setVersions(crfVersions);
            if (eventDefinitionCrf.getParentId() == 0) {
                crfBeans.add(crfBean);
                eventDefinitionCrfs.add(eventDefinitionCrf);
            }
        }
        return crfBeans;
    }
    return crfBeans;
}

Example 12 with CRFBean

use of org.akaza.openclinica.bean.admin.CRFBean in project OpenClinica by OpenClinica.

the class ListEventsForSubjectTableFactory method configureColumns.

@Override
protected void configureColumns(TableFacade tableFacade, Locale locale) {
    resword = ResourceBundleProvider.getWordsBundle(locale);
    resformat = ResourceBundleProvider.getFormatBundle(locale);
    tableFacade.setColumnProperties(columnNames);
    Row row = tableFacade.getTable().getRow();
    int index = 0;
    configureColumn(row.getColumn(columnNames[index]), resword.getString("study_subject_ID"), null, null);
    ++index;
    configureColumn(row.getColumn(columnNames[index]), resword.getString("subject_status"), new StatusCellEditor(), new StatusDroplistFilterEditor());
    ++index;
    configureColumn(row.getColumn(columnNames[index]), resword.getString("site_id"), null, null);
    ++index;
    configureColumn(row.getColumn(columnNames[index]), resword.getString("gender"), null, null, true, false);
    ++index;
    // group class columns
    for (int i = index; i < index + studyGroupClasses.size(); i++) {
        StudyGroupClassBean studyGroupClass = studyGroupClasses.get(i - index);
        configureColumn(row.getColumn(columnNames[i]), studyGroupClass.getName(), new StudyGroupClassCellEditor(studyGroupClass), new SubjectGroupClassDroplistFilterEditor(studyGroupClass), true, false);
    }
    configureColumn(row.getColumn(columnNames[index + studyGroupClasses.size()]), resword.getString("event_status"), new EventStatusCellEditor(), new SubjectEventStatusDroplistFilterEditor(), true, false);
    ++index;
    configureColumn(row.getColumn(columnNames[index + studyGroupClasses.size()]), resword.getString("event_date"), new EventStartDateCellEditor(), null);
    ++index;
    // crf columns
    for (int i = index + studyGroupClasses.size(); i < columnNames.length - 1; i++) {
        CRFBean crfBean = crfBeans.get(i - (index + studyGroupClasses.size()));
        configureColumn(row.getColumn(columnNames[i]), crfBean.getName(), new EventCrfCellEditor(), new SubjectEventCRFStatusDroplistFilterEditor(), true, false);
    }
    String actionsHeader = resword.getString("rule_actions") + "&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;";
    configureColumn(row.getColumn(columnNames[columnNames.length - 1]), actionsHeader, new ActionsCellEditor(), new DefaultActionsEditor(locale), true, false);
}

Example 13 with CRFBean

use of org.akaza.openclinica.bean.admin.CRFBean in project OpenClinica by OpenClinica.

the class DefineStudyEventServlet method confirmDefinition2.

private void confirmDefinition2() throws Exception {
    FormProcessor fp = new FormProcessor(request);
    CRFVersionDAO vdao = new CRFVersionDAO(sm.getDataSource());
    ArrayList crfArray = new ArrayList();
    Map tmpCRFIdMap = (HashMap) session.getAttribute("tmpCRFIdMap");
    // trying to avoid NPE not sure why we would get it there ((tmpCRFIdMap.containsKey(id))), tbh
    if (tmpCRFIdMap == null) {
        tmpCRFIdMap = new HashMap();
    }
    ArrayList crfsWithVersion = (ArrayList) session.getAttribute("crfsWithVersion");
    for (int i = 0; i < crfsWithVersion.size(); i++) {
        int id = fp.getInt("id" + i);
        String name = fp.getString("name" + i);
        // String label = fp.getString("label" + i);
        String selected = fp.getString("selected" + i);
        // logger.info("selected:" + selected);
        if (!StringUtils.isBlank(selected) && "yes".equalsIgnoreCase(selected.trim())) {
            logger.debug("one crf selected");
            CRFBean cb = new CRFBean();
            cb.setId(id);
            cb.setName(name);
            // only find active verions
            ArrayList versions = (ArrayList) vdao.findAllActiveByCRF(cb.getId());
            cb.setVersions(versions);
            crfArray.add(cb);
        } else {
            if (tmpCRFIdMap.containsKey(id)) {
                tmpCRFIdMap.remove(id);
            }
        }
    }
    for (Iterator tmpCRFIterator = tmpCRFIdMap.keySet().iterator(); tmpCRFIterator.hasNext(); ) {
        int id = (Integer) tmpCRFIterator.next();
        String name = (String) tmpCRFIdMap.get(id);
        boolean isExists = false;
        for (Iterator it = crfArray.iterator(); it.hasNext(); ) {
            CRFBean cb = (CRFBean) it.next();
            if (id == cb.getId()) {
                isExists = true;
            }
        }
        if (!isExists) {
            CRFBean cb = new CRFBean();
            cb.setId(id);
            cb.setName(name);
            // only find active verions
            ArrayList versions = (ArrayList) vdao.findAllActiveByCRF(cb.getId());
            cb.setVersions(versions);
            crfArray.add(cb);
        }
    }
    session.removeAttribute("tmpCRFIdMap");
    StudyParameterValueDAO spvdao = new StudyParameterValueDAO(sm.getDataSource());
    if (crfArray.size() == 0) {
        // no crf seleted
        // addPageMessage("At least one CRF must be selected.");
        // request.setAttribute("crfs", crfs);
        addPageMessage(respage.getString("no_CRF_selected_for_definition_add_later"));
        StudyEventDefinitionBean sed = (StudyEventDefinitionBean) session.getAttribute("definition");
        sed.setCrfs(new ArrayList());
        String participateFormStatus = spvdao.findByHandleAndStudy(sed.getStudyId(), "participantPortal").getValue();
        request.setAttribute("participateFormStatus", participateFormStatus);
        session.setAttribute("definition", sed);
        request.setAttribute("eventDefinitionCRFs", new ArrayList());
        // not used on page
        session.setAttribute("edCRFs", new ArrayList());
        forwardPage(Page.DEFINE_STUDY_EVENT_CONFIRM);
    // forwardPage(Page.DEFINE_STUDY_EVENT2);
    } else {
        StudyEventDefinitionBean sed = (StudyEventDefinitionBean) session.getAttribute("definition");
        // crfs selected by user
        sed.setCrfs(crfArray);
        session.setAttribute("eventDefinitionCRFs", new ArrayList());
        session.setAttribute("definition", sed);
        String participateFormStatus = spvdao.findByHandleAndStudy(sed.getStudyId(), "participantPortal").getValue();
        if (participateFormStatus.equals("enabled"))
            baseUrl();
        request.setAttribute("participateFormStatus", participateFormStatus);
        ArrayList<String> sdvOptions = new ArrayList<String>();
        sdvOptions.add(SourceDataVerification.AllREQUIRED.toString());
        sdvOptions.add(SourceDataVerification.PARTIALREQUIRED.toString());
        sdvOptions.add(SourceDataVerification.NOTREQUIRED.toString());
        sdvOptions.add(SourceDataVerification.NOTAPPLICABLE.toString());
        request.setAttribute("sdvOptions", sdvOptions);
        forwardPage(Page.DEFINE_STUDY_EVENT3);
    }
}

Example 14 with CRFBean

use of org.akaza.openclinica.bean.admin.CRFBean in project OpenClinica by OpenClinica.

the class DefineStudyEventServlet method submitDefinition.

/**
 * Inserts the new study into database NullPointer catch added by tbh
 * 092007, mean to fix task #1642 in Mantis
 */
private void submitDefinition() throws NullPointerException {
    StudyEventDefinitionDAO edao = new StudyEventDefinitionDAO(sm.getDataSource());
    StudyEventDefinitionBean sed = (StudyEventDefinitionBean) session.getAttribute("definition");
    // added tbh 092007, to catch bug # 1531
    if (sed.getName() == "" || sed.getName() == null) {
        throw new NullPointerException();
    }
    logger.debug("Definition bean to be created:" + sed.getName() + sed.getStudyId());
    // fine the last one's ordinal
    ArrayList defs = edao.findAllByStudy(currentStudy);
    if (defs == null || defs.isEmpty()) {
        sed.setOrdinal(1);
    } else {
        int lastCount = defs.size() - 1;
        StudyEventDefinitionBean last = (StudyEventDefinitionBean) defs.get(lastCount);
        sed.setOrdinal(last.getOrdinal() + 1);
    }
    sed.setOwner(ub);
    sed.setCreatedDate(new Date());
    sed.setStatus(Status.AVAILABLE);
    StudyEventDefinitionBean sed1 = (StudyEventDefinitionBean) edao.create(sed);
    EventDefinitionCRFDAO cdao = new EventDefinitionCRFDAO(sm.getDataSource());
    CRFDAO crfdao = new CRFDAO(sm.getDataSource());
    StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
    ArrayList eventDefinitionCRFs = new ArrayList();
    if (session.getAttribute("edCRFs") != null) {
        eventDefinitionCRFs = (ArrayList) session.getAttribute("edCRFs");
    }
    for (int i = 0; i < eventDefinitionCRFs.size(); i++) {
        EventDefinitionCRFBean edc = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
        edc.setOwner(ub);
        edc.setCreatedDate(new Date());
        edc.setStatus(Status.AVAILABLE);
        edc.setStudyEventDefinitionId(sed1.getId());
        edc.setOrdinal(i + 1);
        StudyEventDefinitionBean sedBean = (StudyEventDefinitionBean) seddao.findByPK(sed.getId());
        CRFBean cBean = (CRFBean) crfdao.findByPK(edc.getCrfId());
        String crfPath = sedBean.getOid() + "." + cBean.getOid();
        getEventDefinitionCrfTagService().saveEventDefnCrfOfflineTag(2, crfPath, edc, sedBean);
        cdao.create(edc);
    }
    session.removeAttribute("definition");
    session.removeAttribute("edCRFs");
    session.removeAttribute("crfsWithVersion");
    addPageMessage(respage.getString("the_new_event_definition_created_succesfully"));
}

Example 15 with CRFBean

use of org.akaza.openclinica.bean.admin.CRFBean in project OpenClinica by OpenClinica.

the class InitUpdateEventDefinitionServlet method processRequest.

@Override
public void processRequest() throws Exception {
    StudyEventDefinitionDAO sdao = new StudyEventDefinitionDAO(sm.getDataSource());
    String idString = request.getParameter("id");
    logger.info("definition id: " + idString);
    if (StringUtil.isBlank(idString)) {
        addPageMessage(respage.getString("please_choose_a_definition_to_edit"));
        forwardPage(Page.LIST_DEFINITION_SERVLET);
    } else {
        // definition id
        int defId = Integer.valueOf(idString.trim()).intValue();
        StudyEventDefinitionBean sed = (StudyEventDefinitionBean) sdao.findByPK(defId);
        StudyParameterValueDAO spvdao = new StudyParameterValueDAO(sm.getDataSource());
        String participateFormStatus = spvdao.findByHandleAndStudy(sed.getStudyId(), "participantPortal").getValue();
        if (participateFormStatus.equals("enabled"))
            baseUrl();
        request.setAttribute("participateFormStatus", participateFormStatus);
        if (currentStudy.getId() != sed.getStudyId()) {
            addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_active_study_or_contact"));
            forwardPage(Page.MENU_SERVLET);
            return;
        }
        EventDefinitionCRFDAO edao = new EventDefinitionCRFDAO(sm.getDataSource());
        ArrayList eventDefinitionCRFs = (ArrayList) edao.findAllParentsByDefinition(defId);
        CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
        CRFDAO cdao = new CRFDAO(sm.getDataSource());
        ArrayList newEventDefinitionCRFs = new ArrayList();
        for (int i = 0; i < eventDefinitionCRFs.size(); i++) {
            EventDefinitionCRFBean edc = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
            ArrayList versions = (ArrayList) cvdao.findAllActiveByCRF(edc.getCrfId());
            edc.setVersions(versions);
            CRFBean crf = (CRFBean) cdao.findByPK(edc.getCrfId());
            edc.setCrfName(crf.getName());
            edc.setCrf(crf);
            edc.setParticipantForm(edc.isParticipantForm());
            // TO DO: use a better way on JSP page,eg.function tag
            edc.setNullFlags(processNullValues(edc));
            CRFVersionBean defaultVersion = (CRFVersionBean) cvdao.findByPK(edc.getDefaultVersionId());
            edc.setDefaultVersionName(defaultVersion.getName());
            String crfPath = sed.getOid() + "." + edc.getCrf().getOid();
            edc.setOffline(getEventDefinitionCrfTagService().getEventDefnCrfOfflineStatus(2, crfPath, true));
            newEventDefinitionCRFs.add(edc);
        }
        session.setAttribute("definition", sed);
        session.setAttribute("eventDefinitionCRFs", newEventDefinitionCRFs);
        // changed above to new list because static, in-place updating is
        // updating all EDCs, tbh 102007
        ArrayList<String> sdvOptions = new ArrayList<String>();
        sdvOptions.add(SourceDataVerification.AllREQUIRED.toString());
        sdvOptions.add(SourceDataVerification.PARTIALREQUIRED.toString());
        sdvOptions.add(SourceDataVerification.NOTREQUIRED.toString());
        sdvOptions.add(SourceDataVerification.NOTAPPLICABLE.toString());
        request.setAttribute("sdvOptions", sdvOptions);
        forwardPage(Page.UPDATE_EVENT_DEFINITION1);
    }
}