Examples with FormProcessor org.akaza.openclinica.control.form.FormProcessor used on opensource projects

Example 1 with FormProcessor

use of org.akaza.openclinica.control.form.FormProcessor in project OpenClinica by OpenClinica.

the class SignStudySubjectServlet method processRequest.

@Override
public void processRequest() throws Exception {
    SubjectDAO sdao = new SubjectDAO(sm.getDataSource());
    StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    String action = fp.getString("action");
    // studySubjectId
    int studySubId = fp.getInt("id", true);
    String module = fp.getString(MODULE);
    request.setAttribute(MODULE, module);
    if (studySubId == 0) {
        addPageMessage(respage.getString("please_choose_a_subject_to_view"));
        forwardPage(Page.LIST_STUDY_SUBJECTS);
        return;
    }
    StudySubjectBean studySub = (StudySubjectBean) subdao.findByPK(studySubId);
    if (!permitSign(studySub, sm.getDataSource())) {
        addPageMessage(respage.getString("subject_event_cannot_signed"));
        // forwardPage(Page.SUBMIT_DATA_SERVLET);
        forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET);
        // >> changed tbh, 06/2009
        return;
    }
    if (action.equalsIgnoreCase("confirm")) {
        String username = request.getParameter("j_user");
        String password = request.getParameter("j_pass");
        SecurityManager securityManager = ((SecurityManager) SpringServletAccess.getApplicationContext(context).getBean("securityManager"));
        // String encodedUserPass =
        // org.akaza.openclinica.core.SecurityManager
        // .getInstance().encrytPassword(password);
        UserAccountBean ub = (UserAccountBean) session.getAttribute("userBean");
        if (securityManager.verifyPassword(password, getUserDetails()) && ub.getName().equals(username)) {
            if (signSubjectEvents(studySub, sm.getDataSource(), ub)) {
                // Making the StudySubject signed as all the events have
                // become signed.
                studySub.setStatus(Status.SIGNED);
                studySub.setUpdater(ub);
                subdao.update(studySub);
                addPageMessage(respage.getString("subject_event_signed"));
                // forwardPage(Page.SUBMIT_DATA_SERVLET);
                forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET);
                // >> changed tbh, 06/2009
                return;
            } else {
                addPageMessage(respage.getString("errors_in_submission_see_below"));
                forwardPage(Page.LIST_STUDY_SUBJECTS);
                return;
            }
        } else {
            request.setAttribute("id", new Integer(studySubId).toString());
            addPageMessage(restext.getString("password_match"));
            forwardPage(Page.LIST_STUDY_SUBJECTS);
            return;
        }
    }
    request.setAttribute("studySub", studySub);
    int studyId = studySub.getStudyId();
    int subjectId = studySub.getSubjectId();
    SubjectBean subject = (SubjectBean) sdao.findByPK(subjectId);
    if (currentStudy.getStudyParameterConfig().getCollectDob().equals("2")) {
        Date dob = subject.getDateOfBirth();
        if (dob != null) {
            Calendar cal = Calendar.getInstance();
            cal.setTime(dob);
            int year = cal.get(Calendar.YEAR);
            request.setAttribute("yearOfBirth", new Integer(year));
        } else {
            request.setAttribute("yearOfBirth", "");
        }
    }
    request.setAttribute("subject", subject);
    StudyDAO studydao = new StudyDAO(sm.getDataSource());
    StudyBean study = (StudyBean) studydao.findByPK(studyId);
    StudyParameterValueDAO spvdao = new StudyParameterValueDAO(sm.getDataSource());
    study.getStudyParameterConfig().setCollectDob(spvdao.findByHandleAndStudy(studyId, "collectDob").getValue());
    if (study.getParentStudyId() > 0) {
        // this is a site,find parent
        StudyBean parentStudy = (StudyBean) studydao.findByPK(study.getParentStudyId());
        request.setAttribute("parentStudy", parentStudy);
    } else {
        request.setAttribute("parentStudy", new StudyBean());
    }
    ArrayList children = (ArrayList) sdao.findAllChildrenByPK(subjectId);
    request.setAttribute("children", children);
    // find study events
    StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
    EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
    // find all eventcrfs for each event
    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
    ArrayList<DisplayStudyEventBean> displayEvents = getDisplayStudyEventsForStudySubject(study, studySub, sm.getDataSource(), ub, currentRole);
    DiscrepancyNoteUtil discNoteUtil = new DiscrepancyNoteUtil();
    // Don't filter for now; disc note beans are returned with eventCRFId
    // set
    discNoteUtil.injectParentDiscNotesIntoDisplayStudyEvents(displayEvents, new HashSet(), sm.getDataSource(), 0);
    // All the displaystudyevents for one subject
    request.setAttribute("displayStudyEvents", displayEvents);
    // Set up a Map for the JSP view, mapping the eventCRFId to another Map:
    // the
    // inner Map maps the resolution status name to the number of notes for
    // that
    // eventCRF id, as in New --> 2
    Map discNoteByEventCRFid = discNoteUtil.createDiscNoteMapByEventCRF(displayEvents);
    request.setAttribute("discNoteByEventCRFid", discNoteByEventCRFid);
    EntityBeanTable table = fp.getEntityBeanTable();
    // sort by start date,
    table.setSortingIfNotExplicitlySet(1, false);
    // desc
    ArrayList allEventRows = DisplayStudyEventRow.generateRowsFromBeans(displayEvents);
    String[] columns = { resword.getString("event") + " (" + resword.getString("occurrence_number") + ")", resword.getString("start_date1"), resword.getString("location"), resword.getString("status"), resword.getString("actions"), resword.getString("CRFs_atrib") };
    table.setColumns(new ArrayList(Arrays.asList(columns)));
    table.hideColumnLink(4);
    table.hideColumnLink(5);
    if (!"removed".equalsIgnoreCase(studySub.getStatus().getName()) && !"auto-removed".equalsIgnoreCase(studySub.getStatus().getName())) {
        table.addLink(resword.getString("add_new_event"), "CreateNewStudyEvent?" + CreateNewStudyEventServlet.INPUT_STUDY_SUBJECT_ID_FROM_VIEWSUBJECT + "=" + studySub.getId());
    }
    HashMap args = new HashMap();
    args.put("id", new Integer(studySubId).toString());
    table.setQuery("ViewStudySubject", args);
    table.setRows(allEventRows);
    table.computeDisplay();
    request.setAttribute("table", table);
    SubjectGroupMapDAO sgmdao = new SubjectGroupMapDAO(sm.getDataSource());
    ArrayList groupMaps = (ArrayList) sgmdao.findAllByStudySubject(studySubId);
    request.setAttribute("groups", groupMaps);
    AuditEventDAO aedao = new AuditEventDAO(sm.getDataSource());
    ArrayList logs = aedao.findEventStatusLogByStudySubject(studySubId);
    UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
    ArrayList eventLogs = new ArrayList();
    for (int i = 0; i < logs.size(); i++) {
        AuditEventBean avb = (AuditEventBean) logs.get(i);
        StudyEventAuditBean sea = new StudyEventAuditBean();
        sea.setAuditEvent(avb);
        StudyEventBean se = (StudyEventBean) sedao.findByPK(avb.getEntityId());
        StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(se.getStudyEventDefinitionId());
        sea.setDefinition(sed);
        String old = avb.getOldValue().trim();
        try {
            if (!StringUtil.isBlank(old)) {
                SubjectEventStatus oldStatus = SubjectEventStatus.get(new Integer(old).intValue());
                sea.setOldSubjectEventStatus(oldStatus);
            }
            String newValue = avb.getNewValue().trim();
            if (!StringUtil.isBlank(newValue)) {
                SubjectEventStatus newStatus = SubjectEventStatus.get(new Integer(newValue).intValue());
                sea.setNewSubjectEventStatus(newStatus);
            }
        } catch (NumberFormatException e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
        // logger.warning("^^^ caught NFE");
        }
        UserAccountBean updater = (UserAccountBean) udao.findByPK(avb.getUserId());
        sea.setUpdater(updater);
        eventLogs.add(sea);
    }
    // logger.warning("^^^ finished iteration");
    request.setAttribute("eventLogs", eventLogs);
    forwardPage(Page.SIGN_STUDY_SUBJECT);
}

Example 2 with FormProcessor

use of org.akaza.openclinica.control.form.FormProcessor in project OpenClinica by OpenClinica.

the class StudyAuditLogServlet method processRequest.

/*
     * (non-Javadoc) Assume that we get the user id automatically. We will jump
     * from the edit user page if the user is an admin, they can get to see the
     * users' log
     * @see org.akaza.openclinica.control.core.SecureController#processRequest()
     */
/*
     * (non-Javadoc) redo this servlet to run the audits per study subject for
     * the study; need to add a studyId param and then use the
     * StudySubjectDAO.findAllByStudyOrderByLabel() method to grab a lot of
     * study subject beans and then return them much like in
     * ViewStudySubjectAuditLogServet.process() currentStudy instead of studyId?
     */
@Override
protected void processRequest() throws Exception {
    int studyId = currentStudy.getId();
    StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
    SubjectDAO sdao = new SubjectDAO(sm.getDataSource());
    AuditDAO adao = new AuditDAO(sm.getDataSource());
    UserAccountDAO uadao = new UserAccountDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
    EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
    StudyDAO studydao = new StudyDAO(sm.getDataSource());
    CRFDAO cdao = new CRFDAO(sm.getDataSource());
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    StudyAuditLogTableFactory factory = new StudyAuditLogTableFactory();
    factory.setSubjectDao(sdao);
    factory.setStudySubjectDao(subdao);
    factory.setUserAccountDao(uadao);
    factory.setCurrentStudy(currentStudy);
    String auditLogsHtml = factory.createTable(request, response).render();
    request.setAttribute("auditLogsHtml", auditLogsHtml);
    forwardPage(Page.AUDIT_LOGS_STUDY);
}

Example 3 with FormProcessor

use of org.akaza.openclinica.control.form.FormProcessor in project OpenClinica by OpenClinica.

the class RestoreSubjectGroupClassServlet method processRequest.

@Override
public void processRequest() throws Exception {
    String action = request.getParameter("action");
    FormProcessor fp = new FormProcessor(request);
    int classId = fp.getInt("id");
    if (classId == 0) {
        addPageMessage(respage.getString("please_choose_a_subject_group_class_to_restore"));
        forwardPage(Page.SUBJECT_GROUP_CLASS_LIST_SERVLET);
    } else {
        StudyGroupClassDAO sgcdao = new StudyGroupClassDAO(sm.getDataSource());
        StudyGroupDAO sgdao = new StudyGroupDAO(sm.getDataSource());
        SubjectGroupMapDAO sgmdao = new SubjectGroupMapDAO(sm.getDataSource());
        if (action.equalsIgnoreCase("confirm")) {
            StudyGroupClassBean sgcb = (StudyGroupClassBean) sgcdao.findByPK(classId);
            if (sgcb.getStatus().equals(Status.AVAILABLE)) {
                addPageMessage(respage.getString("this_subject_group_class_is_available_cannot_restore"));
                forwardPage(Page.SUBJECT_GROUP_CLASS_LIST_SERVLET);
                return;
            }
            ArrayList groups = sgdao.findAllByGroupClass(sgcb);
            for (int i = 0; i < groups.size(); i++) {
                StudyGroupBean sg = (StudyGroupBean) groups.get(i);
                ArrayList subjectMaps = sgmdao.findAllByStudyGroupClassAndGroup(sgcb.getId(), sg.getId());
                sg.setSubjectMaps(subjectMaps);
            }
            session.setAttribute("group", sgcb);
            session.setAttribute("studyGroups", groups);
            forwardPage(Page.RESTORE_SUBJECT_GROUP_CLASS);
        } else if (action.equalsIgnoreCase("submit")) {
            StudyGroupClassBean group = (StudyGroupClassBean) session.getAttribute("group");
            group.setStatus(Status.AVAILABLE);
            group.setUpdater(ub);
            sgcdao.update(group);
            ArrayList subjectMaps = sgmdao.findAllByStudyGroupClassId(group.getId());
            for (int i = 0; i < subjectMaps.size(); i++) {
                SubjectGroupMapBean sgmb = (SubjectGroupMapBean) subjectMaps.get(i);
                if (sgmb.getStatus().equals(Status.AUTO_DELETED)) {
                    sgmb.setStatus(Status.AVAILABLE);
                    sgmb.setUpdater(ub);
                    sgmdao.update(sgmb);
                }
            }
            addPageMessage(respage.getString("this_subject_group_class_was_restored_succesfully"));
            forwardPage(Page.SUBJECT_GROUP_CLASS_LIST_SERVLET);
        } else {
            addPageMessage(respage.getString("no_action_specified"));
            forwardPage(Page.SUBJECT_GROUP_CLASS_LIST_SERVLET);
        }
    }
}

Example 4 with FormProcessor

use of org.akaza.openclinica.control.form.FormProcessor in project OpenClinica by OpenClinica.

the class SetStudyUserRoleServlet method processRequest.

@Override
public void processRequest() throws Exception {
    UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
    StudyDAO sdao = new StudyDAO(sm.getDataSource());
    String name = request.getParameter("name");
    String studyIdString = request.getParameter("studyId");
    if (StringUtil.isBlank(name) || StringUtil.isBlank(studyIdString)) {
        addPageMessage(respage.getString("please_choose_a_user_to_set_role_for"));
        forwardPage(Page.LIST_USER_IN_STUDY_SERVLET);
    } else {
        String action = request.getParameter("action");
        FormProcessor fp = new FormProcessor(request);
        UserAccountBean user = (UserAccountBean) udao.findByUserName(name);
        StudyBean userStudy = (StudyBean) sdao.findByPK(fp.getInt("studyId"));
        if ("confirm".equalsIgnoreCase(action)) {
            int studyId = Integer.valueOf(studyIdString.trim()).intValue();
            request.setAttribute("user", user);
            StudyUserRoleBean uRole = udao.findRoleByUserNameAndStudyId(name, studyId);
            uRole.setStudyName(userStudy.getName());
            request.setAttribute("uRole", uRole);
            ArrayList roles = Role.toArrayList();
            // admin is not a user role, only used for tomcat
            roles.remove(Role.ADMIN);
            roles.remove(Role.RESEARCHASSISTANT2);
            StudyBean studyBean = (StudyBean) sdao.findByPK(uRole.getStudyId());
            if (currentStudy.getParentStudyId() > 0) {
                roles.remove(Role.COORDINATOR);
                roles.remove(Role.STUDYDIRECTOR);
            } else if (studyBean.getParentStudyId() > 0) {
                roles.remove(Role.COORDINATOR);
                roles.remove(Role.STUDYDIRECTOR);
                // TODO: redo this fix
                Role r = Role.RESEARCHASSISTANT;
                r.setDescription("site_Data_Entry_Person");
                roles.remove(Role.RESEARCHASSISTANT);
                roles.add(r);
                Role ri = Role.INVESTIGATOR;
                ri.setDescription("site_investigator");
                roles.remove(Role.INVESTIGATOR);
                roles.add(ri);
                Role r2 = Role.RESEARCHASSISTANT2;
                r2.setDescription("site_Data_Entry_Person2");
                roles.remove(Role.RESEARCHASSISTANT2);
                roles.add(r2);
            }
            request.setAttribute("roles", roles);
            forwardPage(Page.SET_USER_ROLE_IN_STUDY);
        } else {
            // set role
            String userName = fp.getString("name");
            int studyId = fp.getInt("studyId");
            int roleId = fp.getInt("roleId");
            StudyUserRoleBean sur = new StudyUserRoleBean();
            sur.setName(userName);
            sur.setRole(Role.get(roleId));
            sur.setStudyId(studyId);
            sur.setStudyName(userStudy.getName());
            sur.setStatus(Status.AVAILABLE);
            sur.setUpdater(ub);
            sur.setUpdatedDate(new Date());
            udao.updateStudyUserRole(sur, userName);
            addPageMessage(sendEmail(user, sur));
            forwardPage(Page.LIST_USER_IN_STUDY_SERVLET);
        }
    }
}

Example 5 with FormProcessor

use of org.akaza.openclinica.control.form.FormProcessor in project OpenClinica by OpenClinica.

the class UpdateSubjectGroupClassServlet method confirmGroup.

/**
     * Validates the first section of study and save it into study bean
     *
     * @param request
     * @param response
     * @throws Exception
     */
private void confirmGroup() throws Exception {
    Validator v = new Validator(request);
    FormProcessor fp = new FormProcessor(request);
    v.addValidation("name", Validator.NO_BLANKS);
    // v.addValidation("groupClassTypeId", Validator.IS_AN_INTEGER);
    v.addValidation("subjectAssignment", Validator.NO_BLANKS);
    v.addValidation("name", Validator.LENGTH_NUMERIC_COMPARISON, NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO, 30);
    v.addValidation("subjectAssignment", Validator.LENGTH_NUMERIC_COMPARISON, NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO, 30);
    ArrayList studyGroups = new ArrayList();
    for (int i = 0; i < 10; i++) {
        String name = fp.getString("studyGroup" + i);
        int studyGroupId = fp.getInt("studyGroupId" + i);
        String description = fp.getString("studyGroupDescription" + i);
        if (!StringUtil.isBlank(name)) {
            StudyGroupBean g = new StudyGroupBean();
            g.setName(name);
            g.setDescription(description);
            g.setId(studyGroupId);
            studyGroups.add(g);
            if (name.length() > 255) {
                request.setAttribute("studyGroupError", resexception.getString("group_name_cannot_be_more_255"));
                break;
            }
            if (description.length() > 1000) {
                request.setAttribute("studyGroupError", resexception.getString("group_description_cannot_be_more_100"));
                break;
            }
        }
    }
    errors = v.validate();
    if (fp.getInt("groupClassTypeId") == 0) {
        Validator.addError(errors, "groupClassTypeId", "Group Class Type is required.");
    }
    StudyGroupClassBean group = (StudyGroupClassBean) session.getAttribute("group");
    group.setName(fp.getString("name"));
    group.setGroupClassTypeId(fp.getInt("groupClassTypeId"));
    group.setSubjectAssignment(fp.getString("subjectAssignment"));
    session.setAttribute("group", group);
    session.setAttribute("studyGroups", studyGroups);
    if (errors.isEmpty()) {
        logger.info("no errors in the first section");
        group.setGroupClassTypeName(GroupClassType.get(group.getGroupClassTypeId()).getName());
        forwardPage(Page.UPDATE_SUBJECT_GROUP_CLASS_CONFIRM);
    } else {
        logger.info("has validation errors in the first section");
        request.setAttribute("formMessages", errors);
        request.setAttribute("groupTypes", GroupClassType.toArrayList());
        forwardPage(Page.UPDATE_SUBJECT_GROUP_CLASS);
    }
}