use of org.akaza.openclinica.bean.extract.FilterBean in project OpenClinica by OpenClinica.
the class ApplyFilterServlet method processRequest.
@Override
public void processRequest() throws Exception {
String action = request.getParameter("action");
// if details == show details with an option to return to the list page
if (StringUtil.isBlank(action)) {
EntityBeanTable table = getFilterTable();
request.setAttribute("table", table);
forwardPage(Page.APPLY_FILTER);
} else if ("validate".equalsIgnoreCase(action)) {
FormProcessor fp = new FormProcessor(request);
HashMap errors = new HashMap();
if (fp.getString("submit").equalsIgnoreCase(resword.getString("apply_filter"))) {
if (fp.getInt("filterId") > 0) {
FilterDAO fdao = new FilterDAO(sm.getDataSource());
FilterBean fb = (FilterBean) fdao.findByPK(fp.getInt("filterId"));
session.setAttribute("newFilter", fb);
} else {
Validator.addError(errors, "all", resword.getString("no_filter_was_chosen"));
}
if (!errors.isEmpty()) {
EntityBeanTable table = getFilterTable();
request.setAttribute("table", table);
addPageMessage(respage.getString("errors_in_submission_see_below"));
setInputMessages(errors);
forwardPage(Page.APPLY_FILTER);
} else {
// move on to the next page in create dataset
request.setAttribute("statuses", getStatuses());
forwardPage(Page.CREATE_DATASET_4);
}
} else if (fp.getString("submit").equalsIgnoreCase(resword.getString("create_new_filter"))) {
// forward on to the rules, already on screen 2
forwardPage(Page.CREATE_FILTER_SCREEN_2);
} else if (fp.getString("submit").equalsIgnoreCase(resword.getString("skip_apply_filter_and_save"))) {
// send back to creating a dataset:
// TODO set the longitudinal dates?
// or back a screen before/after that?
String[] fieldNames = { "firstmonth", "firstyear", "lastmonth", "lastyear" };
fp.setCurrentIntValuesAsPreset(fieldNames);
setPresetValues(fp.getPresetValues());
request.setAttribute(BEAN_MONTHS, getMonths());
request.setAttribute(BEAN_YEARS, getYears());
forwardPage(Page.CREATE_DATASET_3);
} else {
// throw an error, you shouldn't get here
}
} else if ("return".equalsIgnoreCase(action)) {
// TODO figure out if we need this? tbh
} else if ("details".equalsIgnoreCase(action)) {
FormProcessor fp = new FormProcessor(request);
int filterId = fp.getInt("filterId");
FilterDAO fDAO = new FilterDAO(sm.getDataSource());
FilterBean showFilter = (FilterBean) fDAO.findByPK(filterId);
request.setAttribute(BEAN_FILTER, showFilter);
forwardPage(Page.VIEW_FILTER_DETAILS);
} else {
// throw an error, you can't get here
}
}
use of org.akaza.openclinica.bean.extract.FilterBean in project OpenClinica by OpenClinica.
the class CreateDatasetServlet method processRequest.
@Override
public void processRequest() throws Exception {
FormProcessor fp = new FormProcessor(request);
String action = fp.getString("action");
if (StringUtil.isBlank(action)) {
// step 1 -- instructions, and continue button
session.setAttribute("newDataset", new DatasetBean());
session.setAttribute("allItems", new ArrayList());
session.setAttribute("crf", new CRFBean());
session.setAttribute("allSelectedItems", new ArrayList());
forwardPage(Page.CREATE_DATASET_1);
} else {
StudyBean studyWithEventDefs = currentStudy;
if (currentStudy.getParentStudyId() > 0) {
studyWithEventDefs = new StudyBean();
studyWithEventDefs.setId(currentStudy.getParentStudyId());
}
if ("begin".equalsIgnoreCase(action)) {
// step 2 -- select study events/crfs
StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
StudyBean studyWithEventDefinitions = currentStudy;
if (currentStudy.getParentStudyId() > 0) {
studyWithEventDefinitions = new StudyBean();
studyWithEventDefinitions.setId(currentStudy.getParentStudyId());
}
ArrayList seds = seddao.findAllActiveByStudy(studyWithEventDefinitions);
CRFDAO crfdao = new CRFDAO(sm.getDataSource());
HashMap events = new LinkedHashMap();
for (int i = 0; i < seds.size(); i++) {
StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seds.get(i);
ArrayList<CRFBean> crfs = (ArrayList<CRFBean>) crfdao.findAllActiveByDefinition(sed);
if (currentStudy.getParentStudyId() > 0) {
// sift through these CRFs and see which ones are hidden
HideCRFManager hideCRFs = HideCRFManager.createHideCRFManager();
crfs = hideCRFs.removeHiddenCRFBeans(studyWithEventDefinitions, sed, crfs, sm.getDataSource());
}
if (!crfs.isEmpty()) {
events.put(sed, crfs);
}
}
// datasets
if (events.isEmpty()) {
addPageMessage(respage.getString("not_have_study_definitions_assigned"));
forwardPage(Page.CREATE_DATASET_1);
} else {
crfdao = new CRFDAO(sm.getDataSource());
ItemDAO idao = new ItemDAO(sm.getDataSource());
ArrayList sedItemIds = CreateDatasetServlet.allSedItemIdsInStudy(events, crfdao, idao);
session.setAttribute("numberOfStudyItems", Integer.toString(sedItemIds.size()));
request.setAttribute("eventlist", events);
session.setAttribute(EVENTS_FOR_CREATE_DATASET, events);
session.setAttribute("newDataset", new DatasetBean());
session.setAttribute("allItems", new ArrayList());
session.setAttribute("crf", new CRFBean());
forwardPage(Page.CREATE_DATASET_2);
}
} else if ("beginsubmit".equalsIgnoreCase(action)) {
String saveItems = fp.getString(SAVE_BUTTON);
String saveContinue = fp.getString(SAVE_CONTINUE_BUTTON);
DatasetBean db = (DatasetBean) session.getAttribute("newDataset");
if (db == null) {
db = new DatasetBean();
}
extractIdsFromForm(db);
extractEventIds(db);
session.setAttribute("newDataset", db);
// +"");
if (!StringUtil.isBlank(saveItems)) {
request.setAttribute("eventlist", session.getAttribute(EVENTS_FOR_CREATE_DATASET));
// BWP 3095>>
String summary = respage.getString("you_have_selected") + " " + db.getItemIds().size() + " " + respage.getString("items_so_far");
summary += genAttMsg(db);
addPageMessage(summary);
int crfId = fp.getInt("crfId");
if (crfId > 0) {
// user choose a crf and select items
forwardPage(Page.CREATE_DATASET_2);
} else {
ArrayList sgclasses = (ArrayList) session.getAttribute("allSelectedGroups");
if (sgclasses == null || sgclasses.size() == 0) {
sgclasses = setUpStudyGroups();
}
session.setAttribute("allSelectedGroups", sgclasses);
request.setAttribute("allSelectedGroups", sgclasses);
// TODO push out list of subject groups here???
// form submitted from "view selected item ' or
// attribute page, so
// forward back to "view selected item " page
forwardPage(Page.CREATE_DATASET_VIEW_SELECTED);
}
} else {
if (db.getItemIds().size() == 0) {
request.setAttribute("eventlist", session.getAttribute(EVENTS_FOR_CREATE_DATASET));
addPageMessage(respage.getString("should_select_one_item_to_create_dataset"));
forwardPage(Page.CREATE_DATASET_2);
} else {
String summary = respage.getString("you_have_selected") + " " + db.getItemIds().size() + " " + respage.getString("items_totally_for_this_dataset");
summary += genAttMsg(db);
addPageMessage(summary);
// 0 means using
fp.addPresetValue("firstmonth", 0);
// default month
fp.addPresetValue("firstyear", 1900);
fp.addPresetValue("lastmonth", 0);
fp.addPresetValue("lastyear", 2100);
setPresetValues(fp.getPresetValues());
logger.warn("found preset values while setting date: " + fp.getPresetValues().toString());
request.setAttribute(BEAN_MONTHS, getMonths());
request.setAttribute(BEAN_YEARS, getYears());
forwardPage(Page.CREATE_DATASET_3);
}
}
} else if ("scopesubmit".equalsIgnoreCase(action)) {
ArrayList months = getMonths();
ArrayList years = getYears();
int firstMonth = fp.getInt("firstmonth");
int firstYear = fp.getInt("firstyear");
int lastMonth = fp.getInt("lastmonth");
int lastYear = fp.getInt("lastyear");
if (fp.getInt("firstmonth") == 0) {
// default value
firstMonth = 1;
}
if (fp.getInt("lastmonth") == 0) {
// default value
lastMonth = 12;
}
errors = new HashMap();
if (fp.getInt("firstmonth") > 0 && firstYear == 1900) {
Validator.addError(errors, "firstmonth", restext.getString("if_specify_month_also_specify_year"));
}
if (fp.getInt("lastmonth") > 0 && lastYear == 2100) {
Validator.addError(errors, "lastmonth", restext.getString("if_specify_month_also_specify_year"));
}
Date dateStart = getFirstDayOfMonth(firstYear, firstMonth);
Date dateEnd = getLastDayOfMonth(lastYear, lastMonth);
if (dateEnd.compareTo(dateStart) < 0) {
Validator.addError(errors, "firstmonth", restext.getString("the_from_should_be_come_before_to"));
}
if (!errors.isEmpty()) {
String[] fieldNames = { "firstmonth", "firstyear", "lastmonth", "lastyear" };
fp.setCurrentIntValuesAsPreset(fieldNames);
setInputMessages(errors);
addPageMessage(respage.getString("errors_in_submission_see_below"));
setPresetValues(fp.getPresetValues());
request.setAttribute(BEAN_MONTHS, getMonths());
request.setAttribute(BEAN_YEARS, getYears());
forwardPage(Page.CREATE_DATASET_3);
} else {
DatasetBean dsb = (DatasetBean) session.getAttribute("newDataset");
dsb.setDateStart(dateStart);
dsb.setDateEnd(dateEnd);
session.setAttribute("newDataset", dsb);
if (fp.getString("submit").equals(resword.getString("continue_to_apply_filter"))) {
// FilterDAO fdao = new FilterDAO(sm.getDataSource());
// Collection filters = fdao.findAll();
// TODO make findAllByProject
// request.setAttribute("filters",filters);
EntityBeanTable table = getFilterTable();
session.setAttribute("partOfCreateDataset", new Integer(1));
// to be used in createFiltersThree servlet, tbh
request.setAttribute("table", table);
forwardPage(Page.APPLY_FILTER);
} else {
request.setAttribute("statuses", Status.toActiveArrayList());
// YW, 2-20-2008 <<these attributes will show on the
// CREATE_DATASET_4
String temp = dsb.getODMMetaDataVersionOid();
request.setAttribute("mdvOID", temp != null && temp.length() > 0 ? temp : "v1.0.0");
temp = dsb.getODMMetaDataVersionName();
request.setAttribute("mdvName", temp != null && temp.length() > 0 ? temp : "MetaDataVersion_v1.0.0");
request.setAttribute("mdvPrevStudy", dsb.getODMPriorStudyOid());
request.setAttribute("mdvPrevOID", dsb.getODMPriorMetaDataVersionOid());
// YW >>
forwardPage(Page.CREATE_DATASET_4);
}
}
} else if ("specifysubmit".equalsIgnoreCase(action)) {
Validator v = new Validator(request);
v.addValidation("dsName", Validator.NO_BLANKS);
v.addValidation("dsName", Validator.NO_SEMI_COLONS_OR_COLONS);
v.addValidation("dsDesc", Validator.NO_BLANKS);
v.addValidation("dsStatus", Validator.IS_VALID_TERM, TermType.STATUS);
v.addValidation("dsName", Validator.LENGTH_NUMERIC_COMPARISON, NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO, 255);
v.addValidation("dsDesc", Validator.LENGTH_NUMERIC_COMPARISON, NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO, 2000);
String mdvOID = fp.getString("mdvOID");
String mdvName = fp.getString("mdvName");
String mdvPrevStudy = fp.getString("mdvPrevStudy");
if (mdvPrevStudy != null && mdvPrevStudy.length() > 0) {
v.addValidation("mdvPrevOID", Validator.NO_BLANKS);
}
String mdvPrevOID = fp.getString("mdvPrevOID");
errors = v.validate();
String dsName = fp.getString("dsName");
if (!StringUtil.isBlank(dsName)) {
// YW, << 3-19-2008
if (dsName.contains("/") || dsName.contains("\\")) {
v.addError(errors, "dsName", restext.getString("slash_not_allowed"));
}
// 2-20-2008, no check for editing dataset
if (((DatasetBean) session.getAttribute("newDataset")).getId() <= 0) {
// YW >>
// logger.info("dsName" + fp.getString("dsName"));
DatasetDAO dsdao = new DatasetDAO(sm.getDataSource());
DatasetBean dsBean = (DatasetBean) dsdao.findByNameAndStudy(fp.getString("dsName").trim(), currentStudy);
if (dsBean.getId() > 0) {
Validator.addError(errors, "dsName", restext.getString("dataset_name_used_by_another_choose_unique"));
}
}
}
if (!errors.isEmpty()) {
String[] fieldNames = { "dsName", "dsDesc" };
fp.setCurrentStringValuesAsPreset(fieldNames);
fp.addPresetValue("dsStatusId", fp.getInt("dsStatus"));
fp.addPresetValue("mdvOID", mdvOID);
fp.addPresetValue("mdvName", mdvName);
fp.addPresetValue("mdvPrevStudy", mdvPrevStudy);
fp.addPresetValue("mdvPrevOID", mdvPrevOID);
addPageMessage(respage.getString("errors_in_submission_see_below"));
setInputMessages(errors);
setPresetValues(fp.getPresetValues());
request.setAttribute("statuses", Status.toActiveArrayList());
forwardPage(Page.CREATE_DATASET_4);
} else {
session.setAttribute("mdvOID", mdvOID);
session.setAttribute("mdvName", mdvName);
session.setAttribute("mdvPrevStudy", mdvPrevStudy);
session.setAttribute("mdvPrevOID", mdvPrevOID);
if (mdvPrevOID != null && mdvPrevOID.length() > 0 && (mdvPrevStudy == null || mdvPrevStudy.length() <= 0)) {
mdvPrevStudy = currentStudy.getId() + "";
}
DatasetBean dsb = (DatasetBean) session.getAttribute("newDataset");
dsb.setSQLStatement(dsb.generateQuery());
String dbName = SQLInitServlet.getField("dataBase");
if ("oracle".equals(dbName)) {
dsb.setSQLStatement(dsb.generateOracleQuery());
}
// TODO set up oracle syntax for the query, grab the
// database
// from the session manager and feed it to the dataset bean
// possibly done, tbh 1/4/2005
// TODO look for the filter here, re-create the sql
// statement
// and put it in here
// possibly done need to test, tbh 1/7/2005
FilterBean fb = (FilterBean) session.getAttribute("newFilter");
if (fb != null) {
// FilterDAO fDAO = new FilterDAO(sm.getDataSource());
dsb.setSQLStatement(dsb.getSQLStatement() + " " + fb.getSQLStatement());
}
// dataset if dataset name has been changed.
if (dsb.getId() > 0 && !dsb.getName().equals(fp.getString("dsName"))) {
dsb.setId(0);
}
// YW >>
dsb.setODMMetaDataVersionName(mdvName);
dsb.setODMMetaDataVersionOid(mdvOID);
dsb.setODMPriorMetaDataVersionOid(mdvPrevOID);
dsb.setODMPriorStudyOid(mdvPrevStudy);
dsb.setName(fp.getString("dsName"));
dsb.setDescription(fp.getString("dsDesc"));
dsb.setStatus(Status.get(fp.getInt("dsStatus")));
dsb.setDatasetItemStatus(DatasetItemStatus.get(fp.getInt("itemStatus")));
session.removeAttribute("partOfCreateDataset");
Date ddate = new SimpleDateFormat("MM/dd/yyyy").parse("01/01/1900");
// done to remove the set up of going to get the filter, tbh
// set up dataset here, grab primary key???!!!???
// added by jxu
request.setAttribute("defaultStart", local_df.parse(local_df.format(ddate)));
request.setAttribute("defaultEnd", getLastDayOfMonth(2100, 12));
session.setAttribute("newDataset", dsb);
forwardPage(Page.CONFIRM_DATASET);
}
} else if ("confirmall".equalsIgnoreCase(action)) {
String submit = fp.getString("btnSubmit");
logger.info("reached confirm all");
if (!resword.getString("confirm_and_save").equalsIgnoreCase(submit)) {
// we're going back, so we should not destroy the
// data we've created, tbh
// session.removeAttribute("newDataset");
// session.removeAttribute("newFilter");
forwardPage(Page.CREATE_DATASET_4);
} else {
DatasetDAO ddao = new DatasetDAO(sm.getDataSource());
DatasetBean dsb = (DatasetBean) session.getAttribute("newDataset");
dsb.setStudyId(this.currentStudy.getId());
dsb.setOwner(ub);
// dsb.setOwnerId(ub.getId());
//
// at this point, dataset itemId will still be kept
// uniquely.
dsb = finalUpateDatasetBean(dsb);
if (dsb.getId() == 0) {
// if the bean hasn't been created already that is...
logger.info("*** about to create the dataset bean");
dsb = (DatasetBean) ddao.create(dsb);
logger.info("created dataset bean: " + dsb.getId() + ", name: " + dsb.getName());
if (!dsb.isActive()) {
addPageMessage(restext.getString("problem_creating_dataset_try_again"));
forwardPage(Page.EXTRACT_DATASETS_MAIN);
}
} else // YW, 2-20-2008 << for editing existing dataset
if (dsb.getId() > 0) {
dsb = (DatasetBean) ddao.updateAll(dsb);
if (!dsb.isActive()) {
addPageMessage(restext.getString("problem_creating_dataset_try_again"));
forwardPage(Page.EXTRACT_DATASETS_MAIN);
}
dsb = (DatasetBean) ddao.updateGroupMap(dsb);
if (!dsb.isActive()) {
addPageMessage(restext.getString("problem_updating_subject_group_class_when_updating_dataset"));
forwardPage(Page.EXTRACT_DATASETS_MAIN);
}
}
// YW >>
logger.info("setting data set id here");
// may be easier to just set the dataset bean
// back into the session?
request.setAttribute("dataset", dsb);
forwardPage(Page.EXPORT_DATASETS);
}
} else {
// refine this bit to catch errors, hopefully
addPageMessage(restext.getString("creating_new_dataset_cancelled"));
forwardPage(Page.CREATE_DATASET_1);
}
}
}
use of org.akaza.openclinica.bean.extract.FilterBean in project OpenClinica by OpenClinica.
the class RemoveFilterServlet method processRequest.
@Override
public void processRequest() throws Exception {
FormProcessor fp = new FormProcessor(request);
int filterId = fp.getInt("filterId");
FilterDAO fDAO = new FilterDAO(sm.getDataSource());
FilterBean filter = (FilterBean) fDAO.findByPK(filterId);
String action = request.getParameter("action");
if (resword.getString("remove_this_filter").equalsIgnoreCase(action)) {
filter.setStatus(Status.DELETED);
fDAO.update(filter);
addPageMessage(respage.getString("filter_removed_admin_can_access_and_reverse"));
EntityBeanTable table = getFilterTable();
request.setAttribute("table", table);
forwardPage(Page.CREATE_FILTER_SCREEN_1);
} else if (resword.getString("cancel").equalsIgnoreCase(action)) {
EntityBeanTable table = getFilterTable();
request.setAttribute("table", table);
forwardPage(Page.CREATE_FILTER_SCREEN_1);
} else {
request.setAttribute("filter", filter);
forwardPage(Page.REMOVE_FILTER);
}
}
use of org.akaza.openclinica.bean.extract.FilterBean in project OpenClinica by OpenClinica.
the class FilterDAO method create.
public EntityBean create(EntityBean eb) {
FilterBean fb = (FilterBean) eb;
logger.info("logged following owner id: " + fb.getOwnerId() + " vs. " + fb.getOwner().getId());
HashMap variables = new HashMap();
int id = getNextPK();
// HashMap nullVars = new HashMap();
variables.put(new Integer(1), fb.getId());
variables.put(new Integer(2), fb.getName());
// name desc sql, status id owner id
variables.put(new Integer(3), fb.getDescription());
variables.put(new Integer(4), fb.getSQLStatement());
variables.put(new Integer(5), new Integer(fb.getStatus().getId()));
variables.put(new Integer(6), new Integer(fb.getOwner().getId()));
// changed from get owner id, tbh
this.execute(digester.getQuery("create"), variables);
fb.setId(id);
return fb;
}
use of org.akaza.openclinica.bean.extract.FilterBean in project OpenClinica by OpenClinica.
the class EditFilterServlet method processRequest.
@Override
public void processRequest() throws Exception {
FormProcessor fp = new FormProcessor(request);
String action = request.getParameter("action");
if ("validate".equalsIgnoreCase(action)) {
// check name, description, status for right now
Validator v = new Validator(request);
v.addValidation("fName", Validator.NO_BLANKS);
v.addValidation("fDesc", Validator.NO_BLANKS);
v.addValidation("fStatusId", Validator.IS_VALID_TERM, TermType.STATUS);
HashMap errors = v.validate();
if (!errors.isEmpty()) {
String[] fieldNames = { "fName", "fDesc" };
fp.setCurrentStringValuesAsPreset(fieldNames);
fp.addPresetValue("fStatusId", fp.getInt("fStatusId"));
addPageMessage(respage.getString("errors_in_submission_see_below"));
setInputMessages(errors);
setPresetValues(fp.getPresetValues());
// TODO determine if this is necessary
int filterId = fp.getInt("filterId");
FilterDAO fDAO = new FilterDAO(sm.getDataSource());
FilterBean showFilter = (FilterBean) fDAO.findByPK(filterId);
request.setAttribute("filter", showFilter);
// maybe just set the above to the session?
request.setAttribute("statuses", getStatuses());
forwardPage(Page.EDIT_FILTER);
} else {
int filterId = fp.getInt("filterId");
FilterDAO fDAO = new FilterDAO(sm.getDataSource());
FilterBean filter = (FilterBean) fDAO.findByPK(filterId);
filter.setName(fp.getString("fName"));
filter.setDescription(fp.getString("fDesc"));
filter.setStatus(Status.get(fp.getInt("fStatusId")));
fDAO.update(filter);
addPageMessage(respage.getString("the_filter_was_succesfully_updated"));
// Collection filters = fDAO.findAll();
// TODO make findAllByProject?
// FormProcessor fp = new FormProcessor(request);
FilterDAO fdao = new FilterDAO(sm.getDataSource());
EntityBeanTable table = fp.getEntityBeanTable();
// TODO make
ArrayList filters = (ArrayList) fdao.findAll();
// findAllByProject
ArrayList filterRows = FilterRow.generateRowsFromBeans(filters);
String[] columns = { resword.getString("filter_name"), resword.getString("description"), resword.getString("created_by"), resword.getString("created_date"), resword.getString("status"), resword.getString("actions") };
table.setColumns(new ArrayList(Arrays.asList(columns)));
table.hideColumnLink(5);
table.setQuery("CreateFiltersOne", new HashMap());
table.setRows(filterRows);
table.computeDisplay();
request.setAttribute("table", table);
forwardPage(Page.CREATE_FILTER_SCREEN_1);
// forwardPage(Page.VALIDATE_EDIT_FILTER);
}
} else {
int filterId = fp.getInt("filterId");
FilterDAO fDAO = new FilterDAO(sm.getDataSource());
FilterBean showFilter = (FilterBean) fDAO.findByPK(filterId);
request.setAttribute("filter", showFilter);
request.setAttribute("statuses", getStatuses());
forwardPage(Page.EDIT_FILTER);
}
}
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