Examples with StudyDTO org.akaza.openclinica.bean.login.StudyDTO used on opensource projects

Example 1 with StudyDTO

use of org.akaza.openclinica.bean.login.StudyDTO in project OpenClinica by OpenClinica.

the class StudyController method createNewStudy.

/**
	 * @api {post} /pages/auth/api/v1/studies/ Create a study
	 * @apiName createNewStudy
	 * @apiPermission Authenticate using api-key. admin
	 * @apiVersion 3.8.0
	 * @apiParam {String} uniqueProtococlId Study unique protocol ID.
	 * @apiParam {String} briefTitle Brief Title .
	 * @apiParam {String} principalInvestigator Principal Investigator Name.
	 * @apiParam {Integer} expectedTotalEnrollment Expected Total Enrollment number
	 * @apiParam {String} sponsor Sponsor name.
	 * @apiParam {String} protocolType 'Interventional' or ' Observational'
	 * @apiParam {String} status 'Available' or 'Design'
	 * @apiParam {String} briefSummary Study Summary
	 * @apiParam {Date} startDate Start date
	 * @apiParam {Array} assignUserRoles Assign Users to Roles for this Study.
	 * @apiGroup Study
	 * @apiHeader {String} api_key Users unique access-key.
	 * @apiDescription This API is to create a New Study in OC.
	 *                 All the fields are required fields and can't be left blank.
	 *                 You need to provide your Api-key to be connected.
	 * @apiParamExample {json} Request-Example:
	 *                  {
	 *                  "briefTitle": "Study Protocol ID Name",
	 *                  "principalInvestigator": "Principal Investigator Name",
	 *                  "expectedTotalEnrollment": "10",
	 *                  "sponsor": "Sponsor Name",
	 *                  "protocolType": "Interventional",
	 *                  "status": "available",
	 *                  "assignUserRoles": [
	 *                  { "username": "usera", "role": "Data Manager" },
	 *                  { "username": "userb", "role": "Study Director" },
	 *                  { "username": "userc", "role": "Data Specialist" },
	 *                  { "username": "userd", "role": "Monitor" },
	 *                  { "username": "usere", "role": "Data Entry Person" }
	 *                  ],
	 *                  "uniqueProtocolID": "Study Protocol ID",
	 *                  "briefSummary": "Study Summary",
	 *                  "startDate": "2011-11-11"
	 *                  }
	 * @apiErrorExample {json} Error-Response:
	 *                  HTTP/1.1 400 Bad Request
	 *                  {
	 *                  "message": "VALIDATION FAILED",
	 *                  "status": "available",
	 *                  "principalInvestigator": "Principal Investigator Name",
	 *                  "expectedTotalEnrollment": "10",
	 *                  "sponsor": "Sponsor Name",
	 *                  "protocolType": "Interventional",
	 *                  "errors": [
	 *                  {"field": "UniqueProtocolId","resource": "Study Object","code": "Unique Protocol Id exist in the System"}
	 *                  ],
	 *                  "startDate": "2011-11-11",
	 *                  "assignUserRoles": [
	 *                  {"username": "usera","role": "Data Manager"},
	 *                  {"username": "userb","role": "Study Director"},
	 *                  {"username": "userc","role": "Data Specialist"}
	 *                  ],
	 *                  "uniqueProtocolID": "Study Protocol ID",
	 *                  "briefTitle": "Study Protocol ID",
	 *                  "briefSummary": "Study Summary",
	 *                  "studyOid": null
	 *                  }
	 * @apiSuccessExample {json} Success-Response:
	 *                    HTTP/1.1 200 OK
	 *                    {
	 *                    "message": "SUCCESS",
	 *                    "uniqueProtocolID": "Study Protocol ID",
	 *                    "studyOid": "S_STUDYPRO",
	 *                    }
	 */
@RequestMapping(value = "/", method = RequestMethod.POST)
public ResponseEntity<Object> createNewStudy(HttpServletRequest request, @RequestBody HashMap<String, Object> map) throws Exception {
    ArrayList<ErrorObject> errorObjects = new ArrayList();
    StudyBean studyBean = null;
    System.out.println("I'm in Create Study");
    ResponseEntity<Object> response = null;
    String validation_failed_message = "VALIDATION FAILED";
    String validation_passed_message = "SUCCESS";
    String uniqueProtocolID = (String) map.get("uniqueProtocolID");
    String name = (String) map.get("briefTitle");
    String principalInvestigator = (String) map.get("principalInvestigator");
    String briefSummary = (String) map.get("briefSummary");
    String sponsor = (String) map.get("sponsor");
    String protocolType = (String) map.get("protocolType");
    String startDate = (String) map.get("startDate");
    String expectedTotalEnrollment = (String) map.get("expectedTotalEnrollment");
    String status = (String) map.get("status");
    ArrayList<UserRole> assignUserRoles = (ArrayList<UserRole>) map.get("assignUserRoles");
    ArrayList<UserRole> userList = new ArrayList<>();
    if (assignUserRoles != null) {
        for (Object userRole : assignUserRoles) {
            UserRole uRole = new UserRole();
            uRole.setUsername((String) ((HashMap<String, Object>) userRole).get("username"));
            uRole.setRole((String) ((HashMap<String, Object>) userRole).get("role"));
            udao = new UserAccountDAO(dataSource);
            UserAccountBean assignedUserBean = (UserAccountBean) udao.findByUserName(uRole.getUsername());
            if (assignedUserBean == null || !assignedUserBean.isActive()) {
                ErrorObject errorOBject = createErrorObject("Study Object", "The Assigned Username " + uRole.getUsername() + " is not a Valid User", "Assigned User");
                errorObjects.add(errorOBject);
            }
            ResourceBundle resterm = org.akaza.openclinica.i18n.util.ResourceBundleProvider.getTermsBundle();
            if (getStudyRole(uRole.getRole(), resterm) == null) {
                ErrorObject errorOBject = createErrorObject("Study Object", "Assigned Role for " + uRole.getUsername() + " is not a Valid Study Role", "Assigned Role");
                errorObjects.add(errorOBject);
            }
            userList.add(uRole);
        }
    }
    StudyDTO studyDTO = buildStudyDTO(uniqueProtocolID, name, briefSummary, principalInvestigator, sponsor, expectedTotalEnrollment, protocolType, status, startDate, userList);
    if (uniqueProtocolID == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "UniqueProtocolID");
        errorObjects.add(errorOBject);
    } else {
        uniqueProtocolID = uniqueProtocolID.trim();
    }
    if (name == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "BriefTitle");
        errorObjects.add(errorOBject);
    } else {
        name = name.trim();
    }
    if (principalInvestigator == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "PrincipalInvestigator");
        errorObjects.add(errorOBject);
    } else {
        principalInvestigator = principalInvestigator.trim();
    }
    if (briefSummary == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "BriefSummary");
        errorObjects.add(errorOBject);
    } else {
        briefSummary = briefSummary.trim();
    }
    if (sponsor == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "Sponsor");
        errorObjects.add(errorOBject);
    } else {
        sponsor = sponsor.trim();
    }
    if (protocolType == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "ProtocolType");
        errorObjects.add(errorOBject);
    } else {
        protocolType = protocolType.trim();
    }
    if (startDate == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "StartDate");
        errorObjects.add(errorOBject);
    } else {
        startDate = startDate.trim();
    }
    if (expectedTotalEnrollment == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "ExpectedTotalEnrollment");
        errorObjects.add(errorOBject);
    } else {
        expectedTotalEnrollment = expectedTotalEnrollment.trim();
    }
    if (status == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "Status");
        errorObjects.add(errorOBject);
    } else {
        status = status.trim();
    }
    if (assignUserRoles == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "AssignUserRoles");
        errorObjects.add(errorOBject);
    }
    if (status != null && !status.equalsIgnoreCase("available") && !status.equalsIgnoreCase("design") && !status.equals("")) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Status Field Should have 'Available' or 'Design' Status only, If left empty , will default to 'Design' Mode", "Status");
        errorObjects.add(errorOBject);
    }
    request.setAttribute("uniqueProId", uniqueProtocolID);
    // Brief Title
    request.setAttribute("name", name);
    request.setAttribute("prinInvestigator", principalInvestigator);
    request.setAttribute("description", briefSummary);
    request.setAttribute("sponsor", sponsor);
    request.setAttribute("startDate", startDate);
    request.setAttribute("expectedTotalEnrollment", expectedTotalEnrollment);
    request.setAttribute("status", status);
    String format = "yyyy-MM-dd";
    SimpleDateFormat formatter = null;
    Date formattedDate = null;
    if (startDate != "" && startDate != null) {
        try {
            formatter = new SimpleDateFormat(format);
            formattedDate = formatter.parse(startDate);
        } catch (ParseException e) {
            ErrorObject errorOBject = createErrorObject("Study Object", "The StartDate format is not a valid 'yyyy-MM-dd' format", "StartDate");
            errorObjects.add(errorOBject);
        }
        if (formattedDate != null) {
            if (!startDate.equals(formatter.format(formattedDate))) {
                ErrorObject errorOBject = createErrorObject("Study Object", "The StartDate format is not a valid 'yyyy-MM-dd' format", "StartDate");
                errorObjects.add(errorOBject);
            }
        }
    }
    UserAccountBean ownerUserAccount = getStudyOwnerAccount(request);
    if (ownerUserAccount == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "The Owner User Account is not Valid Account or Does not have Admin user type", "Owner Account");
        errorObjects.add(errorOBject);
    }
    Validator v0 = new Validator(request);
    v0.addValidation("name", Validator.NO_BLANKS);
    HashMap vError0 = v0.validate();
    if (!vError0.isEmpty()) {
        ErrorObject errorOBject = createErrorObject("Study Object", "This field cannot be blank.", "BriefTitle");
        errorObjects.add(errorOBject);
    }
    Validator v1 = new Validator(request);
    v1.addValidation("uniqueProId", Validator.NO_BLANKS);
    HashMap vError1 = v1.validate();
    if (!vError1.isEmpty()) {
        ErrorObject errorOBject = createErrorObject("Study Object", "This field cannot be blank.", "UniqueProtocolId");
        errorObjects.add(errorOBject);
    }
    Validator v2 = new Validator(request);
    v2.addValidation("description", Validator.NO_BLANKS);
    HashMap vError2 = v2.validate();
    if (!vError2.isEmpty()) {
        ErrorObject errorOBject = createErrorObject("Study Object", "This field cannot be blank.", "BriefSummary");
        errorObjects.add(errorOBject);
    }
    Validator v3 = new Validator(request);
    v3.addValidation("prinInvestigator", Validator.NO_BLANKS);
    HashMap vError3 = v3.validate();
    if (!vError3.isEmpty()) {
        ErrorObject errorOBject = createErrorObject("Study Object", "This field cannot be blank.", "PrincipleInvestigator");
        errorObjects.add(errorOBject);
    }
    Validator v4 = new Validator(request);
    v4.addValidation("sponsor", Validator.NO_BLANKS);
    HashMap vError4 = v4.validate();
    if (!vError4.isEmpty()) {
        ErrorObject errorOBject = createErrorObject("Study Object", "This field cannot be blank.", "Sponsor");
        errorObjects.add(errorOBject);
    }
    Validator v5 = new Validator(request);
    v5.addValidation("startDate", Validator.NO_BLANKS);
    HashMap vError5 = v5.validate();
    if (!vError5.isEmpty()) {
        ErrorObject errorOBject = createErrorObject("Study Object", "This field cannot be blank.", "StartDate");
        errorObjects.add(errorOBject);
    }
    Validator v6 = new Validator(request);
    HashMap vError6 = v6.validate();
    if (uniqueProtocolID != null)
        validateUniqueProId(request, vError6);
    if (!vError6.isEmpty()) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Unique Protocol Id exist in the System", "UniqueProtocolId");
        errorObjects.add(errorOBject);
    }
    Validator v7 = new Validator(request);
    v7.addValidation("expectedTotalEnrollment", Validator.NO_BLANKS);
    HashMap vError7 = v7.validate();
    if (!vError7.isEmpty()) {
        ErrorObject errorOBject = createErrorObject("Study Object", "This field cannot be blank.", "ExpectedTotalEnrollment");
        errorObjects.add(errorOBject);
    }
    if (protocolType != null && !verifyProtocolTypeExist(protocolType)) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Protocol Type is not Valid", "ProtocolType");
        errorObjects.add(errorOBject);
    }
    studyDTO.setErrors(errorObjects);
    if (errorObjects != null && errorObjects.size() != 0) {
        studyDTO.setMessage(validation_failed_message);
        response = new ResponseEntity(studyDTO, org.springframework.http.HttpStatus.BAD_REQUEST);
    } else {
        studyBean = buildStudyBean(uniqueProtocolID, name, briefSummary, principalInvestigator, sponsor, Integer.valueOf(expectedTotalEnrollment), protocolType, status, formattedDate, ownerUserAccount);
        StudyBean sBean = createStudy(studyBean, ownerUserAccount);
        studyDTO.setStudyOid(sBean.getOid());
        studyDTO.setMessage(validation_passed_message);
        StudyUserRoleBean sub = new StudyUserRoleBean();
        sub.setRole(Role.COORDINATOR);
        sub.setStudyId(sBean.getId());
        sub.setStatus(Status.AVAILABLE);
        sub.setOwner(ownerUserAccount);
        StudyUserRoleBean surb = createRole(ownerUserAccount, sub);
        ResourceBundle resterm = org.akaza.openclinica.i18n.util.ResourceBundleProvider.getTermsBundle();
        for (UserRole userRole : userList) {
            sub = new StudyUserRoleBean();
            sub.setRole(getStudyRole(userRole.getRole(), resterm));
            sub.setStudyId(sBean.getId());
            sub.setStatus(Status.AVAILABLE);
            sub.setOwner(ownerUserAccount);
            udao = new UserAccountDAO(dataSource);
            UserAccountBean assignedUserBean = (UserAccountBean) udao.findByUserName(userRole.getUsername());
            surb = createRole(assignedUserBean, sub);
        }
        ResponseSuccessStudyDTO responseSuccess = new ResponseSuccessStudyDTO();
        responseSuccess.setMessage(studyDTO.getMessage());
        responseSuccess.setStudyOid(studyDTO.getStudyOid());
        responseSuccess.setUniqueProtocolID(studyDTO.getUniqueProtocolID());
        response = new ResponseEntity(responseSuccess, org.springframework.http.HttpStatus.OK);
    }
    return response;
}

Example 2 with StudyDTO

use of org.akaza.openclinica.bean.login.StudyDTO in project OpenClinica by OpenClinica.

the class StudyController method buildStudyDTO.

public StudyDTO buildStudyDTO(String uniqueProtocolID, String name, String briefSummary, String principalInvestigator, String sponsor, String expectedTotalEnrollment, String protocolType, String status, String startDate, ArrayList<UserRole> userList) {
    if (status != null) {
        if (status.equals(""))
            status = "design";
    }
    StudyDTO studyDTO = new StudyDTO();
    studyDTO.setUniqueProtocolID(uniqueProtocolID);
    studyDTO.setBriefTitle(name);
    studyDTO.setPrincipalInvestigator(principalInvestigator);
    studyDTO.setBriefSummary(briefSummary);
    studyDTO.setSponsor(sponsor);
    studyDTO.setProtocolType(protocolType);
    studyDTO.setStatus(status);
    studyDTO.setExpectedTotalEnrollment(expectedTotalEnrollment);
    studyDTO.setStartDate(startDate);
    studyDTO.setAssignUserRoles(userList);
    return studyDTO;
}