Examples with UserAccountBean org.akaza.openclinica.bean.login.UserAccountBean used on opensource projects

Example 31 with UserAccountBean

use of org.akaza.openclinica.bean.login.UserAccountBean in project OpenClinica by OpenClinica.

the class PrintDataEntryServlet method mayProceed.

// < ResourceBundleresword, resworkflow, respage,resexception;
/**
     * Checks whether the user has the correct privilege
     */
@Override
public void mayProceed(HttpServletRequest request, HttpServletResponse response) throws InsufficientPermissionException {
    StudyUserRoleBean currentRole = (StudyUserRoleBean) request.getSession().getAttribute("userRole");
    locale = LocaleResolver.getLocale(request);
    UserAccountBean ub = (UserAccountBean) request.getSession().getAttribute(USER_BEAN_NAME);
    if (ub.isSysAdmin()) {
        return;
    }
    if (SubmitDataServlet.mayViewData(ub, currentRole)) {
        return;
    }
    addPageMessage(respage.getString("no_have_correct_privilege_current_study") + respage.getString("change_study_contact_sysadmin"), request);
    throw new InsufficientPermissionException(Page.MENU_SERVLET, resexception.getString("not_director"), "1");
}

Example 32 with UserAccountBean

use of org.akaza.openclinica.bean.login.UserAccountBean in project OpenClinica by OpenClinica.

the class AdministrativeEditingServlet method mayProceed.

/*
     * (non-Javadoc)
     *
     * @see org.akaza.openclinica.control.core.SecureController#mayProceed()
     */
@Override
protected void mayProceed(HttpServletRequest request, HttpServletResponse response) throws InsufficientPermissionException {
    mayAccess(request);
    locale = LocaleResolver.getLocale(request);
    HttpSession session = request.getSession();
    FormProcessor fp = new FormProcessor(request);
    UserAccountBean ub = (UserAccountBean) request.getSession().getAttribute(USER_BEAN_NAME);
    StudyUserRoleBean currentRole = (StudyUserRoleBean) request.getSession().getAttribute("userRole");
    // <
    // resexception=ResourceBundle.getBundle(
    // "org.akaza.openclinica.i18n.exceptions",locale);
    // < respage =
    // ResourceBundle.getBundle("org.akaza.openclinica.i18n.page_messages",
    // locale);
    getInputBeans(request);
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    String fromResolvingNotes = fp.getString("fromResolvingNotes", true);
    if (StringUtil.isBlank(fromResolvingNotes)) {
        session.removeAttribute(ViewNotesServlet.WIN_LOCATION);
        session.removeAttribute(ViewNotesServlet.NOTES_TABLE);
        checkStudyLocked(Page.LIST_STUDY_SUBJECTS, respage.getString("current_study_locked"), request, response);
        checkStudyFrozen(Page.LIST_STUDY_SUBJECTS, respage.getString("current_study_frozen"), request, response);
    }
    request.setAttribute("fromResolvingNotes", fromResolvingNotes);
    LOGGER.debug(" +++++++++++++++++++ " + ecb.getStudyEventId());
    // StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    // StudyEventBean sEvent = (StudyEventBean)
    // sedao.findByPK(ecb.getStudyEventId());
    // if (sEvent.getSubjectEventStatus().equals(SubjectEventStatus.SIGNED))
    // {
    // sEvent.setSubjectEventStatus(SubjectEventStatus.COMPLETED);
    // sEvent.setUpdater(ub);
    // sEvent.setUpdatedDate(new Date());
    // sedao.update(sEvent);
    // }
    DataEntryStage stage = ecb.getStage();
    Role r = currentRole.getRole();
    session.setAttribute("mayProcessUploading", "true");
    if (!SubmitDataServlet.maySubmitData(ub, currentRole)) {
        session.setAttribute("mayProcessUploading", "false");
        String exceptionName = resexception.getString("no_permission_validation");
        String noAccessMessage = respage.getString("not_perform_administrative_editing_CRF");
        addPageMessage(noAccessMessage, request);
        throw new InsufficientPermissionException(Page.MENU, exceptionName, "1");
    }
    LOGGER.info("stage name:" + stage.getName());
    if (stage.equals(DataEntryStage.DOUBLE_DATA_ENTRY_COMPLETE)) {
        // {
        if (r.equals(Role.MONITOR)) {
            session.setAttribute("mayProcessUploading", "false");
            addPageMessage(respage.getString("no_have_correct_privilege_current_study") + respage.getString("change_study_contact_sysadmin"), request);
            throw new InsufficientPermissionException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("no_permission_administrative_editing"), "1");
        }
    } else {
        session.setAttribute("mayProcessUploading", "false");
        addPageMessage(respage.getString("not_perform_administrative_editing_because"), request);
        throw new InsufficientPermissionException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("not_correct_stage"), "1");
    }
    return;
}

Example 33 with UserAccountBean

use of org.akaza.openclinica.bean.login.UserAccountBean in project OpenClinica by OpenClinica.

the class ViewStudyUserServlet method processRequest.

@Override
public void processRequest() throws Exception {
    UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
    String name = request.getParameter("name");
    String studyIdString = request.getParameter("studyId");
    //if(request.getParameter("submit")!=null)
    {
        if (StringUtil.isBlank(name) || StringUtil.isBlank(studyIdString)) {
            addPageMessage(respage.getString("please_choose_a_user_to_view"));
            forwardPage(Page.LIST_USER_IN_STUDY_SERVLET);
        } else {
            int studyId = Integer.valueOf(studyIdString.trim()).intValue();
            UserAccountBean user = (UserAccountBean) udao.findByUserName(name);
            request.setAttribute("user", user);
            StudyUserRoleBean uRole = udao.findRoleByUserNameAndStudyId(name, studyId);
            request.setAttribute("uRole", uRole);
            StudyDAO sdao = new StudyDAO(sm.getDataSource());
            StudyBean study = (StudyBean) sdao.findByPK(studyId);
            request.setAttribute("uStudy", study);
            request.setAttribute("siteRoleMap", Role.siteRoleMap);
            // BWP 12/7/07 >>To provide the view with the correct date format
            // pattern, locale sensitive
            String pattn = "";
            pattn = ResourceBundleProvider.getFormatBundle().getString("date_format_string");
            request.setAttribute("dateFormatPattern", pattn);
            request.setAttribute("action", "");
            forwardPage(Page.VIEW_USER_IN_STUDY);
        }
    }
}

Example 34 with UserAccountBean

use of org.akaza.openclinica.bean.login.UserAccountBean in project OpenClinica by OpenClinica.

the class DataEntryServlet method writeToDB.

protected boolean writeToDB(ItemDataBean itemData, DisplayItemBean dib, ItemDataDAO iddao, int ordinal, HttpServletRequest request) {
    ItemDataBean idb = itemData;
    UserAccountBean ub = (UserAccountBean) request.getSession().getAttribute(USER_BEAN_NAME);
    StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    idb.setItemId(dib.getItem().getId());
    idb.setEventCRFId(ecb.getId());
    if (idb.getValue().equals("")) {
        idb.setStatus(getBlankItemStatus());
    } else {
        idb.setStatus(getNonBlankItemStatus(request));
    }
    if (StringUtils.isBlank(dib.getEditFlag())) {
        if (!idb.isActive()) {
            // will this need to change for double data entry?
            idb.setOrdinal(ordinal);
            idb.setCreatedDate(new Date());
            idb.setOwner(ub);
            idb = (ItemDataBean) iddao.create(idb);
        } else {
            idb.setUpdater(ub);
            // tbh 5990: should we update the logic here for nonrepeats?
            // //System.out.println("string util is blank: update an item data " + idb.getId() + " :" + idb.getValue());
            LOGGER.debug("update item update_id " + idb.getUpdater().getId());
            idb = (ItemDataBean) iddao.updateValue(idb);
        }
    } else {
        // for the items in group, they have editFlag
        if ("add".equalsIgnoreCase(dib.getEditFlag())) {
            idb.setOrdinal(ordinal);
            idb.setCreatedDate(new Date());
            idb.setOwner(ub);
            LOGGER.debug("create a new item data" + idb.getItemId() + idb.getValue());
            // idb = (ItemDataBean) iddao.create(idb);
            // >>tbh 08/2008
            idb.setUpdater(ub);
            // idb = (ItemDataBean) iddao.updateValue(idb);
            // instead of two hits to the db, we perform an 'upsert'
            // combining them into one
            idb = (ItemDataBean) iddao.upsert(idb);
        // <<tbh
        } else if ("edit".equalsIgnoreCase(dib.getEditFlag())) {
            idb.setUpdater(ub);
            // //System.out.println("update an item data - running update value " + idb.getId() + " :" + idb.getValue());
            LOGGER.debug("update item update_id " + idb.getUpdater().getId());
            // to make sure we are running the correct command on the db
            if (idb.getId() != 0) {
                idb.setUpdatedDate(new Date());
                idb = (ItemDataBean) iddao.updateValue(idb);
            } else {
                idb.setCreatedDate(new Date());
                idb.setOrdinal(ordinal);
                idb.setOwner(ub);
                idb = (ItemDataBean) iddao.upsert(idb);
                LOGGER.debug("just ran upsert! " + idb.getId());
            }
        }
    //             else if ("remove".equalsIgnoreCase(dib.getEditFlag())) {
    //                LOGGER.debug("REMOVE an item data" + idb.getItemId() + idb.getValue());
    //                idb.setUpdater(ub);
    //                idb.setStatus(Status.DELETED);
    //                idb = (ItemDataBean) iddao.updateValueForRemoved(idb);
    //
    //                DiscrepancyNoteDAO dnDao = new DiscrepancyNoteDAO(getDataSource());
    //                List dnNotesOfRemovedItem = dnDao.findExistingNotesForItemData(idb.getId());
    //                if (!dnNotesOfRemovedItem.isEmpty()) {
    //                    DiscrepancyNoteBean itemParentNote = null;
    //                    for (Object obj : dnNotesOfRemovedItem) {
    //                        if (((DiscrepancyNoteBean) obj).getParentDnId() == 0) {
    //                            itemParentNote = (DiscrepancyNoteBean) obj;
    //                        }
    //                    }
    //                    DiscrepancyNoteBean dnb = new DiscrepancyNoteBean();
    //                    if (itemParentNote != null) {
    //                        dnb.setParentDnId(itemParentNote.getId());
    //                        dnb.setDiscrepancyNoteTypeId(itemParentNote.getDiscrepancyNoteTypeId());
    //                    }
    //                    dnb.setResolutionStatusId(ResolutionStatus.CLOSED.getId());
    //                    dnb.setStudyId(currentStudy.getId());
    //                    dnb.setAssignedUserId(ub.getId());
    //                    dnb.setOwner(ub);
    //                    dnb.setEntityType(DiscrepancyNoteBean.ITEM_DATA);
    //                    dnb.setEntityId(idb.getId());
    //                    dnb.setCreatedDate(new Date());
    //                    dnb.setColumn("value");
    //                    dnb.setDescription("The item has been removed, this Discrepancy Note has been Closed.");
    //                    dnDao.create(dnb);
    //                    dnDao.createMapping(dnb);
    //                    itemParentNote.setResolutionStatusId(ResolutionStatus.CLOSED.getId());
    //                    dnDao.update(itemParentNote);
    //                }
    // }
    }
    return idb.isActive();
}

Example 35 with UserAccountBean

use of org.akaza.openclinica.bean.login.UserAccountBean in project OpenClinica by OpenClinica.

the class DataEntryServlet method createEventCRF.

/**
     * Creates a new Event CRF or update the exsiting one, that is, an event CRF can be created but not item data yet, in this case, still consider it is not
     * started(called uncompleted before)
     * @param request TODO
     * @param fp TODO
     *
     * @return
     * @throws Exception
     */
private EventCRFBean createEventCRF(HttpServletRequest request, FormProcessor fp) throws InconsistentStateException {
    locale = LocaleResolver.getLocale(request);
    // < resmessage =
    // ResourceBundle.getBundle("org.akaza.openclinica.i18n.page_messages",
    // locale);
    // < restext =
    // ResourceBundle.getBundle("org.akaza.openclinica.i18n.notes",locale);
    // <
    // resexception=ResourceBundle.getBundle(
    // "org.akaza.openclinica.i18n.exceptions",locale);
    UserAccountBean ub = (UserAccountBean) request.getSession().getAttribute(USER_BEAN_NAME);
    StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
    EventCRFBean ecb;
    EventCRFDAO ecdao = new EventCRFDAO(getDataSource());
    int crfVersionId = fp.getInt(INPUT_CRF_VERSION_ID);
    LOGGER.trace("***FOUND*** crfversionid: " + crfVersionId);
    int studyEventId = fp.getInt(INPUT_STUDY_EVENT_ID);
    int eventDefinitionCRFId = fp.getInt(INPUT_EVENT_DEFINITION_CRF_ID);
    int subjectId = fp.getInt(INPUT_SUBJECT_ID);
    int eventCRFId = fp.getInt(INPUT_EVENT_CRF_ID);
    LOGGER.trace("look specifically wrt event crf id: " + eventCRFId);
    LOGGER.trace("Creating event CRF.  Study id: " + currentStudy.getId() + "; CRF Version id: " + crfVersionId + "; Study Event id: " + studyEventId + "; Event Definition CRF id: " + eventDefinitionCRFId + "; Subject: " + subjectId);
    StudySubjectDAO ssdao = new StudySubjectDAO(getDataSource());
    StudySubjectBean ssb = ssdao.findBySubjectIdAndStudy(subjectId, currentStudy);
    if (ssb.getId() <= 0) {
        LOGGER.trace("throwing ISE with study subject bean id of " + ssb.getId());
        // "begin_data_entry_without_event_but_subject"));
        throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("begin_data_entry_without_event_but_subject"));
    }
    StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(getDataSource());
    StudyEventDefinitionBean sedb = seddao.findByEventDefinitionCRFId(eventDefinitionCRFId);
    // logger.trace("study event definition:" + sedb.getId());
    if (sedb.getId() <= 0) {
        addPageMessage(resexception.getString("begin_data_entry_without_event_but_study"), request);
        throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("begin_data_entry_without_event_but_study"));
    }
    CRFVersionDAO cvdao = new CRFVersionDAO(getDataSource());
    EntityBean eb = cvdao.findByPK(crfVersionId);
    if (eb.getId() <= 0) {
        //addPageMessage(resexception.getString("begin_data_entry_without_event_but_CRF"));
        throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("begin_data_entry_without_event_but_CRF"));
    }
    StudyEventDAO sedao = new StudyEventDAO(getDataSource());
    StudyEventBean sEvent = (StudyEventBean) sedao.findByPK(studyEventId);
    StudyBean studyWithSED = currentStudy;
    if (currentStudy.getParentStudyId() > 0) {
        studyWithSED = new StudyBean();
        studyWithSED.setId(currentStudy.getParentStudyId());
    }
    AuditableEntityBean aeb = sedao.findByPKAndStudy(studyEventId, studyWithSED);
    if (aeb.getId() <= 0) {
        addPageMessage(resexception.getString("begin_data_entry_without_event_but_especified_event"), request);
        throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("begin_data_entry_without_event_but_especified_event"));
    }
    ecb = new EventCRFBean();
    if (eventCRFId == 0) {
        // no event CRF created yet
        ArrayList ecList = ecdao.findByEventSubjectVersion(sEvent, ssb, (CRFVersionBean) eb);
        if (ecList.size() > 0) {
            ecb = (EventCRFBean) ecList.get(0);
        } else {
            ecb.setAnnotations("");
            ecb.setCreatedDate(new Date());
            ecb.setCRFVersionId(crfVersionId);
            if (currentStudy.getStudyParameterConfig().getInterviewerNameDefault().equals("blank")) {
                ecb.setInterviewerName("");
            } else {
                // default will be event's owner name
                ecb.setInterviewerName(sEvent.getOwner().getName());
            }
            if (!currentStudy.getStudyParameterConfig().getInterviewDateDefault().equals("blank")) {
                if (sEvent.getDateStarted() != null) {
                    // default
                    ecb.setDateInterviewed(sEvent.getDateStarted());
                // date
                } else {
                    // logger.trace("evnet start date is null, so date
                    // interviewed is null");
                    ecb.setDateInterviewed(null);
                }
            } else {
                ecb.setDateInterviewed(null);
            // logger.trace("date interviewed is
            // null,getInterviewDateDefault() is blank");
            }
            // ecb.setOwnerId(ub.getId());
            // above depreciated, try without it, tbh
            ecb.setOwner(ub);
            ecb.setStatus(Status.AVAILABLE);
            ecb.setCompletionStatusId(1);
            ecb.setStudySubjectId(ssb.getId());
            ecb.setStudyEventId(studyEventId);
            ecb.setValidateString("");
            ecb.setValidatorAnnotations("");
            ecb = (EventCRFBean) ecdao.create(ecb);
            LOGGER.debug("*********CREATED EVENT CRF");
        }
    } else {
        // there is an event CRF already, only need to update
        ecb = (EventCRFBean) ecdao.findByPK(eventCRFId);
        ecb.setCRFVersionId(crfVersionId);
        ecb.setUpdatedDate(new Date());
        ecb.setUpdater(ub);
        ecb = updateECB(sEvent, request);
        ecb = (EventCRFBean) ecdao.update(ecb);
    }
    if (ecb.getId() <= 0) {
        addPageMessage(resexception.getString("new_event_CRF_not_created"), request);
        throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("new_event_CRF_not_created"));
    } else {
        if (sEvent.getSubjectEventStatus().equals(SubjectEventStatus.SIGNED)) {
            sEvent.setSubjectEventStatus(SubjectEventStatus.COMPLETED);
            sEvent.setUpdater(ub);
            sEvent.setUpdatedDate(new Date());
            sedao.update(sEvent);
        } else {
            sEvent.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED);
            sEvent.setUpdater(ub);
            sEvent.setUpdatedDate(new Date());
            sedao.update(sEvent);
        }
    }
    return ecb;
}