Examples with EventDefinitionCRFBean org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean used on opensource projects

Example 66 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class ParticipantEventService method getEventDefCrfsForStudyEvent.

public List<EventDefinitionCRFBean> getEventDefCrfsForStudyEvent(StudySubjectBean studySubject, StudyEventBean studyEvent) {
    Integer studyId = studySubject.getStudyId();
    StudyBean studyBean = (StudyBean) getStudyDAO().findByPK(studyId);
    ArrayList<EventDefinitionCRFBean> eventDefCrfs = null;
    ArrayList<EventDefinitionCRFBean> parentEventDefCrfs = new ArrayList<EventDefinitionCRFBean>();
    ArrayList<EventDefinitionCRFBean> netEventDefinitionCrfs = new ArrayList<EventDefinitionCRFBean>();
    eventDefCrfs = (ArrayList<EventDefinitionCRFBean>) getEventDefCRFDAO().findAllDefIdandStudyId(studyEvent.getStudyEventDefinitionId(), studyId);
    StudyBean parentStudy = null;
    if (studyBean.getParentStudyId() == 0)
        parentStudy = studyBean;
    else
        parentStudy = (StudyBean) getStudyDAO().findByPK(studyBean.getParentStudyId());
    parentEventDefCrfs = (ArrayList<EventDefinitionCRFBean>) getEventDefCRFDAO().findAllDefIdandStudyId(studyEvent.getStudyEventDefinitionId(), parentStudy.getId());
    boolean found;
    for (EventDefinitionCRFBean parentEventDefinitionCrf : parentEventDefCrfs) {
        found = false;
        for (EventDefinitionCRFBean eventDefinitionCrf : eventDefCrfs) {
            if (parentEventDefinitionCrf.getId() == eventDefinitionCrf.getParentId()) {
                // 
                found = true;
                netEventDefinitionCrfs.add(eventDefinitionCrf);
                break;
            }
        }
        if (!found)
            netEventDefinitionCrfs.add(parentEventDefinitionCrf);
    }
    return netEventDefinitionCrfs;
}

Example 67 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class RemoveCRFFromDefinitionServlet method processRequest.

@Override
public void processRequest() throws Exception {
    ArrayList edcs = (ArrayList) session.getAttribute("eventDefinitionCRFs");
    ArrayList updatedEdcs = new ArrayList();
    String crfName = "";
    StudyEventDefinitionBean sed = (StudyEventDefinitionBean) session.getAttribute("definition");
    StudyParameterValueDAO spvdao = new StudyParameterValueDAO(sm.getDataSource());
    String participateFormStatus = spvdao.findByHandleAndStudy(sed.getStudyId(), "participantPortal").getValue();
    request.setAttribute("participateFormStatus", participateFormStatus);
    if (edcs != null && edcs.size() > 1) {
        String idString = request.getParameter("id");
        logger.info("crf id:" + idString);
        if (StringUtil.isBlank(idString)) {
            addPageMessage(respage.getString("please_choose_a_crf_to_remove"));
            forwardPage(Page.UPDATE_EVENT_DEFINITION1);
        } else {
            // crf id
            int id = Integer.valueOf(idString.trim()).intValue();
            for (int i = 0; i < edcs.size(); i++) {
                EventDefinitionCRFBean edc = (EventDefinitionCRFBean) edcs.get(i);
                if (edc.getCrfId() == id) {
                    edc.setStatus(Status.DELETED);
                    crfName = edc.getCrfName();
                }
                if (edc.getId() > 0 || !edc.getStatus().equals(Status.DELETED)) {
                    updatedEdcs.add(edc);
                    logger.info("\nversion:" + edc.getDefaultVersionId());
                }
            }
            session.setAttribute("eventDefinitionCRFs", updatedEdcs);
            addPageMessage(respage.getString("has_been_removed_need_confirmation"));
            forwardPage(Page.UPDATE_EVENT_DEFINITION1);
        }
    } else {
        addPageMessage(respage.getString("an_ED_needs_to_have_least_one_CRF"));
        forwardPage(Page.UPDATE_EVENT_DEFINITION1);
    }
}

Example 68 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class RemoveStudyEventServlet method getDisplayEventCRFs.

/**
 * Each of the event CRFs with its corresponding CRFBean. Then generates a
 * list of DisplayEventCRFBeans, one for each event CRF.
 *
 * @param eventCRFs
 *            The list of event CRFs for this study event.
 * @param eventDefinitionCRFs
 *            The list of event definition CRFs for this study event.
 * @return The list of DisplayEventCRFBeans for this study event.
 */
private ArrayList getDisplayEventCRFs(ArrayList eventCRFs, ArrayList eventDefinitionCRFs) {
    ArrayList answer = new ArrayList();
    HashMap definitionsById = new HashMap();
    int i;
    for (i = 0; i < eventDefinitionCRFs.size(); i++) {
        EventDefinitionCRFBean edc = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
        definitionsById.put(new Integer(edc.getStudyEventDefinitionId()), edc);
    }
    StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    CRFDAO cdao = new CRFDAO(sm.getDataSource());
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    for (i = 0; i < eventCRFs.size(); i++) {
        EventCRFBean ecb = (EventCRFBean) eventCRFs.get(i);
        // populate the event CRF with its crf bean
        int crfVersionId = ecb.getCRFVersionId();
        CRFBean cb = cdao.findByVersionId(crfVersionId);
        ecb.setCrf(cb);
        CRFVersionBean cvb = (CRFVersionBean) cvdao.findByPK(crfVersionId);
        ecb.setCrfVersion(cvb);
        // then get the definition so we can call
        // DisplayEventCRFBean.setFlags
        int studyEventId = ecb.getStudyEventId();
        int studyEventDefinitionId = sedao.getDefinitionIdFromStudyEventId(studyEventId);
        EventDefinitionCRFBean edc = (EventDefinitionCRFBean) definitionsById.get(new Integer(studyEventDefinitionId));
        DisplayEventCRFBean dec = new DisplayEventCRFBean();
        dec.setFlags(ecb, ub, currentRole, edc.isDoubleEntry());
        answer.add(dec);
    }
    return answer;
}

Example 69 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class LockCRFVersionServlet method processRequest.

@Override
public void processRequest() throws Exception {
    FormProcessor fp = new FormProcessor(request);
    int crfVersionId = fp.getInt("id", true);
    String action = fp.getString("action");
    // checks which module the requests are from
    String module = fp.getString(MODULE);
    request.setAttribute(MODULE, module);
    if (crfVersionId == 0) {
        addPageMessage(respage.getString("choose_valid_crf_version"));
        forwardPage(Page.CRF_LIST_SERVLET);
        return;
    }
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    CRFDAO cdao = new CRFDAO(sm.getDataSource());
    CRFVersionBean version = (CRFVersionBean) cvdao.findByPK(crfVersionId);
    // System.out.println("crf version found:" + version.getName());
    CRFBean crf = (CRFBean) cdao.findByPK(version.getCrfId());
    if (!ub.isSysAdmin() && (version.getOwnerId() != ub.getId())) {
        addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_active_study_or_contact"));
        forwardPage(Page.MENU_SERVLET);
        return;
    }
    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
    ArrayList eventCRFs = ecdao.findAllStudySubjectByCRFVersion(crfVersionId);
    if (StringUtil.isBlank(action)) {
        request.setAttribute("crfVersionToLock", version);
        request.setAttribute("crf", crf);
        request.setAttribute("eventSubjectsUsingVersion", eventCRFs);
        forwardPage(Page.CONFIRM_LOCKING_CRF_VERSION);
    } else if ("confirm".equalsIgnoreCase(action)) {
        version.setStatus(Status.LOCKED);
        version.setUpdater(ub);
        cvdao.update(version);
        ArrayList versionList = (ArrayList) cvdao.findAllByCRF(version.getCrfId());
        if (versionList.size() > 0) {
            EventDefinitionCRFDAO edCRFDao = new EventDefinitionCRFDAO(sm.getDataSource());
            ArrayList edcList = (ArrayList) edCRFDao.findAllByCRF(version.getCrfId());
            for (int i = 0; i < edcList.size(); i++) {
                EventDefinitionCRFBean edcBean = (EventDefinitionCRFBean) edcList.get(i);
                // @pgawade 18-May-2011 #5414 - Changes for setting the correct
                // default crf version Id to event
                // when existing default version is locked
                // RemoveCRFVersionServlet.updateEventDef(edcBean, edCRFDao,
                // versionList);
                RemoveCRFVersionServlet.updateEventDef(edcBean, edCRFDao, versionList, crfVersionId);
            }
        }
        addPageMessage(respage.getString("crf_version_archived_successfully"));
        forwardPage(Page.CRF_LIST_SERVLET);
    }
}

Example 70 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class UnlockEventDefinitionServlet method processRequest.

@Override
public void processRequest() throws Exception {
    String idString = request.getParameter("id");
    int defId = Integer.valueOf(idString.trim()).intValue();
    StudyEventDefinitionDAO sdao = new StudyEventDefinitionDAO(sm.getDataSource());
    StudyEventDefinitionBean sed = (StudyEventDefinitionBean) sdao.findByPK(defId);
    // find all CRFs
    EventDefinitionCRFDAO edao = new EventDefinitionCRFDAO(sm.getDataSource());
    ArrayList eventDefinitionCRFs = (ArrayList) edao.findAllByDefinition(defId);
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    CRFDAO cdao = new CRFDAO(sm.getDataSource());
    for (int i = 0; i < eventDefinitionCRFs.size(); i++) {
        EventDefinitionCRFBean edc = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
        ArrayList versions = (ArrayList) cvdao.findAllByCRF(edc.getCrfId());
        edc.setVersions(versions);
        CRFBean crf = (CRFBean) cdao.findByPK(edc.getCrfId());
        edc.setCrfName(crf.getName());
    }
    // finds all events
    StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    ArrayList events = (ArrayList) sedao.findAllByDefinition(sed.getId());
    String action = request.getParameter("action");
    if (StringUtil.isBlank(idString)) {
        addPageMessage(respage.getString("please_choose_a_SED_to_unlock"));
        forwardPage(Page.LIST_DEFINITION_SERVLET);
    } else {
        if ("confirm".equalsIgnoreCase(action)) {
            if (!sed.getStatus().equals(Status.LOCKED)) {
                addPageMessage(respage.getString("this_SED_cannot_be_unlocked") + " " + respage.getString("please_contact_sysadmin_for_more_information"));
                forwardPage(Page.LIST_DEFINITION_SERVLET);
                return;
            }
            request.setAttribute("definitionToUnlock", sed);
            request.setAttribute("eventDefinitionCRFs", eventDefinitionCRFs);
            request.setAttribute("events", events);
            forwardPage(Page.UNLOCK_DEFINITION);
        } else {
            logger.info("submit to lock the definition");
            // unlock definition
            sed.setStatus(Status.AVAILABLE);
            sed.setUpdater(ub);
            sed.setUpdatedDate(new Date());
            sdao.update(sed);
            // lock all crfs
            for (int j = 0; j < eventDefinitionCRFs.size(); j++) {
                EventDefinitionCRFBean edc = (EventDefinitionCRFBean) eventDefinitionCRFs.get(j);
                edc.setStatus(Status.AVAILABLE);
                edc.setUpdater(ub);
                edc.setUpdatedDate(new Date());
                edao.update(edc);
            }
            // unlock all events
            EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
            for (int j = 0; j < events.size(); j++) {
                StudyEventBean event = (StudyEventBean) events.get(j);
                event.setStatus(Status.AVAILABLE);
                event.setUpdater(ub);
                event.setUpdatedDate(new Date());
                sedao.update(event);
                ArrayList eventCRFs = ecdao.findAllByStudyEvent(event);
                // unlock all the item data
                ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
                for (int k = 0; k < eventCRFs.size(); k++) {
                    EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(k);
                    eventCRF.setStatus(Status.AVAILABLE);
                    eventCRF.setUpdater(ub);
                    eventCRF.setUpdatedDate(new Date());
                    ecdao.update(eventCRF);
                    ArrayList itemDatas = iddao.findAllByEventCRFId(eventCRF.getId());
                    for (int a = 0; a < itemDatas.size(); a++) {
                        ItemDataBean item = (ItemDataBean) itemDatas.get(a);
                        item.setStatus(Status.AVAILABLE);
                        item.setUpdater(ub);
                        item.setUpdatedDate(new Date());
                        iddao.update(item);
                    }
                }
            }
            String emailBody = respage.getString("the_SED") + " " + sed.getName() + respage.getString("has_been_unlocked_for_the_study") + " " + currentStudy.getName() + ". " + respage.getString("subject_event_data_is_as_it_was_before");
            addPageMessage(emailBody);
            sendEmail(emailBody);
            forwardPage(Page.LIST_DEFINITION_SERVLET);
        }
    }
}