Examples with StudyEventBean org.akaza.openclinica.bean.managestudy.StudyEventBean used on opensource projects

Example 66 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class ExtractBean method getEventEnd.

private String getEventEnd(int h, int i, int j) {
    StudyEventBean seb = getEvent(h, i, j);
    Date end = seb.getDateEnded();
    // YW 08-20-2007 for displaying time if appliable
    if (seb.getEndTimeFlag()) {
        // .format(end) : "");
        return end != null ? long_sdf.format(end) : "";
    } else {
        return end != null ? sdf.format(end) : "";
    }
}

Example 67 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class DynamicsMetadataService method insert.

private void insert(Integer itemDataId, List<PropertyBean> properties, UserAccountBean ub, RuleSetBean ruleSet, Status itemDataStatus, List<StratificationFactorBean> stratificationFactorBeans) {
    ItemDataBean itemDataBeanA = (ItemDataBean) getItemDataDAO().findByPK(itemDataId);
    EventCRFBean eventCrfBeanA = (EventCRFBean) getEventCRFDAO().findByPK(itemDataBeanA.getEventCRFId());
    StudyEventBean studyEventBeanA = (StudyEventBean) getStudyEventDAO().findByPK(eventCrfBeanA.getStudyEventId());
    ItemGroupMetadataBean itemGroupMetadataBeanA = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemDataBeanA.getItemId(), eventCrfBeanA.getCRFVersionId());
    Boolean isGroupARepeating = isGroupRepeating(itemGroupMetadataBeanA);
    String itemGroupAOrdinal = getExpressionService().getGroupOrdninalCurated(ruleSet.getTarget().getValue());
    for (PropertyBean propertyBean : properties) {
        String expression = getExpressionService().constructFullExpressionIfPartialProvided(propertyBean.getOid(), ruleSet.getTarget().getValue());
        ItemBean itemBeanB = getExpressionService().getItemBeanFromExpression(expression);
        ItemGroupBean itemGroupBeanB = getExpressionService().getItemGroupExpression(expression);
        ItemGroupMetadataBean itemGroupMetadataBeanB = null;
        Boolean isGroupBRepeating = null;
        String itemGroupBOrdinal = null;
        EventCRFBean eventCrfBeanB = null;
        Boolean isItemInSameForm = getItemFormMetadataDAO().findByItemIdAndCRFVersionId(itemBeanB.getId(), eventCrfBeanA.getCRFVersionId()).getId() != 0 ? true : false;
        // Item Does not below to same form
        if (!isItemInSameForm) {
            List<EventCRFBean> eventCrfs = getEventCRFDAO().findAllByStudyEventAndCrfOrCrfVersionOid(studyEventBeanA, getExpressionService().getCrfOid(expression));
            if (eventCrfs.size() == 0) {
                CRFVersionBean crfVersion = getExpressionService().getCRFVersionFromExpression(expression);
                CRFBean crf = getExpressionService().getCRFFromExpression(expression);
                int crfVersionId = 0;
                EventDefinitionCRFBean eventDefinitionCRFBean = getEventDefinitionCRfDAO().findByStudyEventDefinitionIdAndCRFId(studyEventBeanA.getStudyEventDefinitionId(), crf.getId());
                if (eventDefinitionCRFBean.getId() != 0) {
                    crfVersionId = crfVersion != null ? crfVersion.getId() : eventDefinitionCRFBean.getDefaultVersionId();
                }
                // Create new event crf
                eventCrfBeanB = eventCrfBeanA.copy();
                eventCrfBeanB.setStatus(Status.AVAILABLE);
                eventCrfBeanB.setId(0);
                eventCrfBeanB.setCRFVersionId(crfVersionId);
                eventCrfBeanB = (EventCRFBean) getEventCRFDAO().create(eventCrfBeanB);
            } else {
                eventCrfBeanB = eventCrfs.get(0);
            }
        }
        if (isItemInSameForm) {
            eventCrfBeanB = eventCrfBeanA;
        }
        itemGroupMetadataBeanB = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemBeanB.getId(), eventCrfBeanB.getCRFVersionId());
        isGroupBRepeating = isGroupRepeating(itemGroupMetadataBeanB);
        itemGroupBOrdinal = getExpressionService().getGroupOrdninalCurated(expression);
        // If A and B are both non repeating groups
        if (!isGroupARepeating && !isGroupBRepeating) {
            ItemDataBean oidBasedItemData = oneToOne(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, 1);
            oidBasedItemData.setValue(getValue(propertyBean, ruleSet, eventCrfBeanA, stratificationFactorBeans));
            if (itemDataStatus != null)
                oidBasedItemData.setStatus(itemDataStatus);
            getItemDataDAO().updateValue(oidBasedItemData, getDateFormat(propertyBean));
        }
        // If A is not repeating group & B is a repeating group with no index selected
        if (!isGroupARepeating && isGroupBRepeating && itemGroupBOrdinal.equals("")) {
            List<ItemDataBean> oidBasedItemDatas = oneToMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub);
            for (ItemDataBean oidBasedItemData : oidBasedItemDatas) {
                oidBasedItemData.setValue(getValue(propertyBean, ruleSet, eventCrfBeanA, stratificationFactorBeans));
                if (itemDataStatus != null)
                    oidBasedItemData.setStatus(itemDataStatus);
                getItemDataDAO().updateValue(oidBasedItemData, getDateFormat(propertyBean));
            }
        }
        // If A is not repeating group & B is a repeating group with index selected
        if (!isGroupARepeating && isGroupBRepeating && !itemGroupBOrdinal.equals("")) {
            ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupBOrdinal));
            oidBasedItemData.setValue(getValue(propertyBean, ruleSet, eventCrfBeanA, stratificationFactorBeans));
            if (itemDataStatus != null)
                oidBasedItemData.setStatus(itemDataStatus);
            getItemDataDAO().updateValue(oidBasedItemData, getDateFormat(propertyBean));
        }
        // If A is repeating/ non repeating group & B is a repeating group with index selected as END
        if (isGroupBRepeating && itemGroupBOrdinal.equals("END")) {
            ItemDataBean oidBasedItemData = oneToEndMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub);
            oidBasedItemData.setValue(getValue(propertyBean, ruleSet, eventCrfBeanA, stratificationFactorBeans));
            if (itemDataStatus != null)
                oidBasedItemData.setStatus(itemDataStatus);
            getItemDataDAO().updateValue(oidBasedItemData, getDateFormat(propertyBean));
        }
        // If A is repeating group with index & B is a repeating group with index selected
        if (isGroupARepeating && isGroupBRepeating && !itemGroupBOrdinal.equals("") && !itemGroupBOrdinal.equals("END")) {
            ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupBOrdinal));
            oidBasedItemData.setValue(getValue(propertyBean, ruleSet, eventCrfBeanA, stratificationFactorBeans));
            if (itemDataStatus != null)
                oidBasedItemData.setStatus(itemDataStatus);
            getItemDataDAO().updateValue(oidBasedItemData, getDateFormat(propertyBean));
        }
        // If A is repeating group with index & B is a repeating group with no index selected
        if (isGroupARepeating && isGroupBRepeating && itemGroupBOrdinal.equals("")) {
            ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupAOrdinal));
            oidBasedItemData.setValue(getValue(propertyBean, ruleSet, eventCrfBeanA, stratificationFactorBeans));
            if (itemDataStatus != null)
                oidBasedItemData.setStatus(itemDataStatus);
            getItemDataDAO().updateValue(oidBasedItemData, getDateFormat(propertyBean));
        }
    // // If A is repeating group with index & B is none-repeating group
    // if (isGroupARepeating && !isGroupBRepeating ) {
    // ItemDataBean oidBasedItemData =
    // oneToOne(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, 1);
    // 
    // oidBasedItemData.setValue(getValue(propertyBean, ruleSet, eventCrfBeanA));
    // getItemDataDAO().updateValue(oidBasedItemData, "yyyy-MM-dd");
    // }
    }
}

Example 68 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class DynamicsMetadataService method show.

public void show(Integer itemDataId, List<PropertyBean> properties, RuleSetBean ruleSet) {
    ItemDataBean itemDataBeanA = (ItemDataBean) getItemDataDAO().findByPK(itemDataId);
    EventCRFBean eventCrfBeanA = (EventCRFBean) getEventCRFDAO().findByPK(itemDataBeanA.getEventCRFId());
    StudyEventBean studyEventBeanA = (StudyEventBean) getStudyEventDAO().findByPK(eventCrfBeanA.getStudyEventId());
    ItemGroupMetadataBean itemGroupMetadataBeanA = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemDataBeanA.getItemId(), eventCrfBeanA.getCRFVersionId());
    Boolean isGroupARepeating = isGroupRepeating(itemGroupMetadataBeanA);
    String itemGroupAOrdinal = getExpressionService().getGroupOrdninalCurated(ruleSet.getTarget().getValue());
    for (PropertyBean propertyBean : properties) {
        String oid = propertyBean.getOid();
        ItemOrItemGroupHolder itemOrItemGroup = getItemOrItemGroup(oid);
        // OID is an item
        if (itemOrItemGroup.getItemBean() != null) {
            ItemDataBean oidBasedItemData = getItemData(itemOrItemGroup.getItemBean(), eventCrfBeanA, itemDataBeanA.getOrdinal());
            ItemFormMetadataBean itemFormMetadataBean = getItemFormMetadataDAO().findByItemIdAndCRFVersionId(itemOrItemGroup.getItemBean().getId(), eventCrfBeanA.getCRFVersionId());
            DynamicsItemFormMetadataBean dynamicsMetadataBean = getDynamicsItemFormMetadataBean(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
            if (dynamicsMetadataBean == null) {
                showItem(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
            } else if (dynamicsMetadataBean != null && !dynamicsMetadataBean.isShowItem()) {
                dynamicsMetadataBean.setShowItem(true);
                getDynamicsItemFormMetadataDao().saveOrUpdate(dynamicsMetadataBean);
            }
        } else // OID is a group
        {
            logger.debug("found item group id 1 " + oid);
            ItemGroupBean itemGroupBean = itemOrItemGroup.getItemGroupBean();
            ArrayList sectionBeans = getSectionDAO().findAllByCRFVersionId(eventCrfBeanA.getCRFVersionId());
            for (int i = 0; i < sectionBeans.size(); i++) {
                SectionBean sectionBean = (SectionBean) sectionBeans.get(i);
                // System.out.println("found section " + sectionBean.getId());
                List<ItemGroupMetadataBean> itemGroupMetadataBeans = getItemGroupMetadataDAO().findMetaByGroupAndSection(itemGroupBean.getId(), eventCrfBeanA.getCRFVersionId(), sectionBean.getId());
                for (ItemGroupMetadataBean itemGroupMetadataBean : itemGroupMetadataBeans) {
                    if (itemGroupMetadataBean.getItemGroupId() == itemGroupBean.getId()) {
                        // System.out.println("found item group id 2 " + oid);
                        DynamicsItemGroupMetadataBean dynamicsGroupBean = getDynamicsItemGroupMetadataBean(itemGroupMetadataBean, eventCrfBeanA);
                        if (dynamicsGroupBean == null) {
                            showGroup(itemGroupMetadataBean, eventCrfBeanA);
                        } else if (dynamicsGroupBean != null && !dynamicsGroupBean.isShowGroup()) {
                            dynamicsGroupBean.setShowGroup(true);
                            getDynamicsItemGroupMetadataDao().saveOrUpdate(dynamicsGroupBean);
                        }
                    }
                }
            }
        }
    }
}

Example 69 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class RuleSetBulkRuleRunner method populateForRuleSetBasedView.

private List<RuleSetBasedViewContainer> populateForRuleSetBasedView(List<RuleSetBasedViewContainer> theList, RuleSetBean ruleSet, RuleBean rule, String akey, RuleActionBean ruleAction) {
    StudyEventBean studyEvent = (StudyEventBean) getStudyEventDao().findByPK(Integer.valueOf(getExpressionService().getStudyEventDefenitionOrdninalCurated(ruleSet.getTarget().getValue())));
    // for (String akey : actionsToBeExecuted.keySet()) {
    // for (RuleActionBean ruleAction : actionsToBeExecuted.get(akey)) {
    RuleSetBasedViewContainer container = new RuleSetBasedViewContainer(rule.getName(), rule.getOid(), rule.getExpression().getValue(), akey, ruleAction.getActionType().toString(), ruleAction.getSummary());
    if (!theList.contains(container)) {
        theList.add(container);
    }
    StudySubjectBean studySubject = (StudySubjectBean) getStudySubjectDao().findByPK(studyEvent.getStudySubjectId());
    theList.get(theList.indexOf(container)).addSubject(studySubject.getLabel());
    // }
    return theList;
}

Example 70 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class DiscrepancyNoteUtil method injectDiscNotesIntoDisplayStudyEvents.

/**
 * This method is an overloaded version of the previous method, with the
 * only difference being the resolutionStatusIds parameter in this method.
 * This method adds the associated discrepancy notes to the appropriate
 * StudyEventBean (contained by DisplayStudyBeans).
 *
 * @param displayStudyBeans
 *            A List of DisplayStudyEventBeans.
 * @param resolutionStatusIds
 *            A HashSet object consisting of resolution status ids (i.e.,
 *            1,2,3).
 * @param dataSource
 *            A DataSource object, for use with the DAO methods.
 * @param discNoteType
 *            An int discrepancy note type, for filtering the discrepancy
 *            notes that
 * @param discrepancyNoteThreads
 *            A List of DiscrepancyNoteThreads
 */
public void injectDiscNotesIntoDisplayStudyEvents(List<DisplayStudyEventBean> displayStudyBeans, Set<Integer> resolutionStatusIds, DataSource dataSource, int discNoteType, List<DiscrepancyNoteThread> discrepancyNoteThreads) {
    if (displayStudyBeans == null) {
        return;
    }
    // booleans representing whether this method should only get
    // DiscrepancyNoteBeans with
    // certain resolution status or discrepancyNoteTypeId number.
    boolean hasResolutionStatus = this.checkResolutionStatus(resolutionStatusIds);
    boolean hasDiscNoteType = discNoteType >= 1 && discNoteType <= 4;
    EventCRFDAO eventCRFDAO = new EventCRFDAO(dataSource);
    DiscrepancyNoteDAO discrepancyNoteDAO = new DiscrepancyNoteDAO(dataSource);
    StudyEventBean studyEventBean;
    List<EventCRFBean> eventCRFBeans = new ArrayList<EventCRFBean>();
    List<DiscrepancyNoteBean> foundDiscNotes = new ArrayList<DiscrepancyNoteBean>();
    for (DisplayStudyEventBean dStudyEventBean : displayStudyBeans) {
        studyEventBean = dStudyEventBean.getStudyEvent();
        // All EventCRFs for a study event
        eventCRFBeans = eventCRFDAO.findAllByStudyEvent(studyEventBean);
        for (EventCRFBean eventCrfBean : eventCRFBeans) {
            // Find ItemData type notes associated with an event crf
            foundDiscNotes = discrepancyNoteDAO.findItemDataDNotesFromEventCRF(eventCrfBean);
            // return only parent beans
            foundDiscNotes = filterDiscNotesForOnlyParents(foundDiscNotes, discrepancyNoteThreads);
            // update the resolution status of these parent discrepancy
            // notes
            updateStatusUsingThread(foundDiscNotes, discrepancyNoteThreads);
            // filter for any specified disc note type
            if (!foundDiscNotes.isEmpty() && hasDiscNoteType) {
                // only include disc notes that have the specified disc note
                // type id
                foundDiscNotes = filterforDiscNoteType(foundDiscNotes, discNoteType);
            }
            if (!foundDiscNotes.isEmpty()) {
                if (!hasResolutionStatus) {
                    studyEventBean.getDiscBeanList().addAll(foundDiscNotes);
                } else {
                    // session variable
                    for (DiscrepancyNoteBean discBean : foundDiscNotes) {
                        for (int statusId : resolutionStatusIds) {
                            if (discBean.getResolutionStatusId() == statusId) {
                                studyEventBean.getDiscBeanList().add(discBean);
                            }
                        }
                    }
                }
            }
        // 3014: Not for now; Find EventCRF type notes
        /*
                 * foundDiscNotes =
                 * discrepancyNoteDAO.findEventCRFDNotesFromEventCRF(eventCrfBean);
                 * //filter for any specified disc note type if((!
                 * foundDiscNotes.isEmpty()) && hasDiscNoteType){ foundDiscNotes =
                 * filterforDiscNoteType(foundDiscNotes,discNoteType); }
                 *
                 * if(! foundDiscNotes.isEmpty()){ if(! hasResolutionStatus) {
                 * studyEventBean.getDiscBeanList().addAll(foundDiscNotes); }
                 * else { //Only include disc notes with a particular resolution
                 * status, specified by //the parameter passed to the servlet
                 * for(DiscrepancyNoteBean discBean : foundDiscNotes) { for(int
                 * statusId : resolutionStatusIds){
                 * if(discBean.getResolutionStatusId() == statusId){
                 * studyEventBean.getDiscBeanList().add(discBean); } } } } }
                 */
        // end if(! foundDiscNotes.isEmpty()){
        }
    // end for(EventCRFBean...
    }
// end for (DisplayStudyEventBean
}