Examples with StudyEventBean org.akaza.openclinica.bean.managestudy.StudyEventBean used on opensource projects

Example 41 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class ImportCRFDataService method eventCRFStatusesValid.

/*
     * purpose: returns false if any of the forms/EventCRFs fail the UpsertOnBean rules.
     */
public boolean eventCRFStatusesValid(ODMContainer odmContainer, UserAccountBean ub) {
    ArrayList<EventCRFBean> eventCRFBeans = new ArrayList<EventCRFBean>();
    ArrayList<Integer> eventCRFBeanIds = new ArrayList<Integer>();
    EventCRFDAO eventCrfDAO = new EventCRFDAO(ds);
    StudySubjectDAO studySubjectDAO = new StudySubjectDAO(ds);
    StudyEventDefinitionDAO studyEventDefinitionDAO = new StudyEventDefinitionDAO(ds);
    StudyDAO studyDAO = new StudyDAO(ds);
    StudyEventDAO studyEventDAO = new StudyEventDAO(ds);
    UpsertOnBean upsert = odmContainer.getCrfDataPostImportContainer().getUpsertOn();
    // If Upsert bean is not present, create one with default settings
    if (upsert == null)
        upsert = new UpsertOnBean();
    String studyOID = odmContainer.getCrfDataPostImportContainer().getStudyOID();
    StudyBean studyBean = studyDAO.findByOid(studyOID);
    ArrayList<SubjectDataBean> subjectDataBeans = odmContainer.getCrfDataPostImportContainer().getSubjectData();
    for (SubjectDataBean subjectDataBean : subjectDataBeans) {
        ArrayList<StudyEventDataBean> studyEventDataBeans = subjectDataBean.getStudyEventData();
        StudySubjectBean studySubjectBean = studySubjectDAO.findByOidAndStudy(subjectDataBean.getSubjectOID(), studyBean.getId());
        for (StudyEventDataBean studyEventDataBean : studyEventDataBeans) {
            ArrayList<FormDataBean> formDataBeans = studyEventDataBean.getFormData();
            String sampleOrdinal = studyEventDataBean.getStudyEventRepeatKey() == null ? "1" : studyEventDataBean.getStudyEventRepeatKey();
            StudyEventDefinitionBean studyEventDefinitionBean = studyEventDefinitionDAO.findByOidAndStudy(studyEventDataBean.getStudyEventOID(), studyBean.getId(), studyBean.getParentStudyId());
            logger.info("find all by def and subject " + studyEventDefinitionBean.getName() + " study subject " + studySubjectBean.getName());
            StudyEventBean studyEventBean = (StudyEventBean) studyEventDAO.findByStudySubjectIdAndDefinitionIdAndOrdinal(studySubjectBean.getId(), studyEventDefinitionBean.getId(), Integer.parseInt(sampleOrdinal));
            // locked
            if (studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.LOCKED) || studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.SIGNED) || studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.STOPPED)) {
                return true;
            }
            for (FormDataBean formDataBean : formDataBeans) {
                CRFVersionDAO crfVersionDAO = new CRFVersionDAO(ds);
                ArrayList<CRFVersionBean> crfVersionBeans = crfVersionDAO.findAllByOid(formDataBean.getFormOID());
                for (CRFVersionBean crfVersionBean : crfVersionBeans) {
                    ArrayList<EventCRFBean> eventCrfBeans = eventCrfDAO.findByEventSubjectVersion(studyEventBean, studySubjectBean, crfVersionBean);
                    // event crf, yet.
                    if (eventCrfBeans.isEmpty()) {
                        logger.debug("   found no event crfs from Study Event id " + studyEventBean.getId() + ", location " + studyEventBean.getLocation());
                        if ((studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.SCHEDULED) || studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.DATA_ENTRY_STARTED) || studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.COMPLETED))) {
                            if (!upsert.isNotStarted())
                                return false;
                        }
                    }
                    for (EventCRFBean ecb : eventCrfBeans) {
                        Integer ecbId = new Integer(ecb.getId());
                        if (!(ecb.getStage().equals(DataEntryStage.INITIAL_DATA_ENTRY) && upsert.isDataEntryStarted()) && !(ecb.getStage().equals(DataEntryStage.DOUBLE_DATA_ENTRY_COMPLETE) && upsert.isDataEntryComplete()))
                            return false;
                    }
                }
            }
        }
    }
    return true;
}

Example 42 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class CrfBusinessLogicHelper method markCRFStarted.

/**
 * The following methods are for 'mark CRF Started' Note that we will also wrap Study Event status changes in this
 * code, possibly split out in a later release, tbh 06/2008
 *
 * @return
 */
public boolean markCRFStarted(EventCRFBean ecb, UserAccountBean ub, boolean inTransaction) throws Exception {
    EventCRFDAO eventCrfDao = new EventCRFDAO(ds);
    StudyDAO sdao = new StudyDAO(ds);
    StudyBean study = sdao.findByStudySubjectId(ecb.getStudySubjectId());
    EventDefinitionCRFBean edcb = getEventDefinitionCrfByStudyEventAndCrfVersion(ecb, study);
    StudyEventDefinitionDAO studyEventDefinitionDao = new StudyEventDefinitionDAO(ds);
    StudyEventDefinitionBean sedBean = (StudyEventDefinitionBean) studyEventDefinitionDao.findByPK(edcb.getStudyEventDefinitionId());
    CRFDAO crfDao = new CRFDAO(ds);
    ArrayList crfs = (ArrayList) crfDao.findAllActiveByDefinition(sedBean);
    sedBean.setCrfs(crfs);
    logger.debug("inout_event_crf_id:" + ecb.getId());
    logger.debug("inout_study_event_def_id:" + sedBean.getId());
    Status newStatus = Status.AVAILABLE;
    DataEntryStage newStage = ecb.getStage();
    ecb.setUpdater(ub);
    ecb.setUpdatedDate(new Date());
    ecb.setStatus(newStatus);
    ecb.setStage(newStage);
    ecb = (EventCRFBean) eventCrfDao.update(ecb);
    logger.debug("just updated event crf id: " + ecb.getId());
    StudyEventDAO sedao = new StudyEventDAO(ds);
    StudyEventBean seb = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
    if (seb.getSubjectEventStatus().isScheduled() || seb.getSubjectEventStatus().isNotScheduled() || seb.getSubjectEventStatus().isDE_Started()) {
        // change status for study event
        seb.setUpdatedDate(new Date());
        seb.setUpdater(ub);
        seb.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED);
        seb = (StudyEventBean) sedao.update(seb, inTransaction);
    }
    return true;
}

Example 43 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class CrfBusinessLogicHelper method markCRFComplete.

/**
 * The following methods are for 'mark CRF complete' Note that we will also wrap Study Event status changes in this
 * code, possibly split out in a later release, tbh 06/2008
 *
 * @return
 */
public boolean markCRFComplete(EventCRFBean ecb, UserAccountBean ub, boolean inTransaction) throws Exception {
    DataEntryStage stage = ecb.getStage();
    EventCRFDAO eventCrfDao = new EventCRFDAO(ds);
    ItemDataDAO itemDataDao = new ItemDataDAO(ds);
    StudyDAO sdao = new StudyDAO(ds);
    StudySubjectDAO ssdao = new StudySubjectDAO(ds);
    StudyBean study = sdao.findByStudySubjectId(ecb.getStudySubjectId());
    EventDefinitionCRFBean edcb = getEventDefinitionCrfByStudyEventAndCrfVersion(ecb, study);
    // StudyEventDAO studyEventDao = new StudyEventDAO(ds);
    // StudyEventBean studyEventBean = (StudyEventBean)
    // studyEventDao.findByPK(ecb.getStudyEventId());
    // Status studyEventStatus = studyEventBean.getStatus();
    StudyEventDefinitionDAO studyEventDefinitionDao = new StudyEventDefinitionDAO(ds);
    StudyEventDefinitionBean sedBean = (StudyEventDefinitionBean) studyEventDefinitionDao.findByPK(edcb.getStudyEventDefinitionId());
    CRFDAO crfDao = new CRFDAO(ds);
    ArrayList crfs = (ArrayList) crfDao.findAllActiveByDefinition(sedBean);
    sedBean.setCrfs(crfs);
    // request.setAttribute(TableOfContentsServlet.INPUT_EVENT_CRF_BEAN,
    // ecb);
    // request.setAttribute(INPUT_EVENT_CRF_ID, new
    // Integer(ecb.getId()));
    logger.debug("inout_event_crf_id:" + ecb.getId());
    logger.debug("inout_study_event_def_id:" + sedBean.getId());
    Status newStatus = ecb.getStatus();
    DataEntryStage newStage = ecb.getStage();
    boolean ide = true;
    newStatus = Status.UNAVAILABLE;
    // ecb.setUpdaterId(ub.getId());
    ecb.setUpdater(ub);
    ecb.setUpdatedDate(new Date());
    ecb.setDateCompleted(new Date());
    ecb.setDateValidateCompleted(new Date());
    /*
         * //for the non-reviewed sections, no item data in DB yet, need to //create them if
         * (!isEachSectionReviewedOnce()) { boolean canSave = saveItemsToMarkComplete(newStatus); if (canSave == false){
         * addPageMessage("You may not mark this Event CRF complete, because there are some required entries which have
         * not been filled out."); return false; } }
         */
    ecb.setStatus(newStatus);
    ecb.setStage(newStage);
    ecb = (EventCRFBean) eventCrfDao.update(ecb);
    logger.debug("just updated event crf id: " + ecb.getId());
    // note the below statement only updates the DATES, not the STATUS
    eventCrfDao.markComplete(ecb, ide);
    // update all the items' status to complete
    itemDataDao.updateStatusByEventCRF(ecb, newStatus);
    // change status for study event
    StudyEventDAO sedao = new StudyEventDAO(ds);
    StudyEventBean seb = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
    seb.setUpdatedDate(new Date());
    seb.setUpdater(ub);
    // updates with Pauls observation from bug:2488:
    // 1. If there is only one CRF in the event (whether the CRF was
    // required or not), and data was imported for it, the status of the
    // event should be Completed.
    // 
    logger.debug("sed bean get crfs get size: " + sedBean.getCrfs().size());
    logger.debug("edcb get crf id: " + edcb.getCrfId() + " version size? " + edcb.getVersions().size());
    logger.debug("ecb get crf id: " + ecb.getCrf().getId());
    logger.debug("ecb get crf version id: " + ecb.getCRFVersionId());
    if (sedBean.getCrfs().size() == 1) {
        // && edcb.getCrfId() ==
        // ecb.getCrf().getId()) {
        seb.setSubjectEventStatus(SubjectEventStatus.COMPLETED);
        logger.info("just set subj event status to -- COMPLETED --");
    } else // removing sedBean.getCrfs().size() > 1 &&
    if (areAllRequired(seb, study) && !areAllCompleted(seb, study)) {
        seb.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED);
        logger.info("just set subj event status to -- DATAENTRYSTARTED --");
    } else // removing sedBean.getCrfs().size() > 1 &&
    if (!areAllRequired(seb, study)) {
        if (areAllRequiredCompleted(seb, study)) {
            seb.setSubjectEventStatus(SubjectEventStatus.COMPLETED);
            logger.info("just set subj event status to -- 3completed3 --");
        } else {
            seb.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED);
            logger.info("just set subj event status to -- DATAENTRYSTARTED --");
        }
    } else if (noneAreRequired(seb, study)) {
        seb.setSubjectEventStatus(SubjectEventStatus.COMPLETED);
        logger.info("just set subj event status to -- 5completed5 --");
    }
    logger.debug("just set subj event status, final status is " + seb.getSubjectEventStatus().getName());
    logger.debug("final overall status is " + seb.getStatus().getName());
    seb = (StudyEventBean) sedao.update(seb, inTransaction);
    return true;
}

Example 44 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class StudyInfoPanel method generateTreeFromBeansWithoutLink.

/**
 * Generates a tree view in sdie info panel for submitting data page
 *
 * @param rows
 * @param displayData
 * @param studySubject
 * @param ecb
 * @return
 */
public ArrayList generateTreeFromBeansWithoutLink(ArrayList rows, ArrayList displayData, StudySubjectBean studySubject, EventCRFBean ecb) {
    Iterator itRows = rows.iterator();
    displayData.add(new StudyInfoPanelLine("Study Events", "(" + rows.size() + ")", true, false, false));
    while (itRows.hasNext()) {
        DisplayStudyEventBean dseBean = (DisplayStudyEventBean) itRows.next();
        StudyEventBean seBean = dseBean.getStudyEvent();
        // checks whether the event is the current one
        if (ecb != null && ecb.getStudyEventId() == seBean.getId()) {
            displayData.add(new StudyInfoPanelLine("Study Event", seBean.getStudyEventDefinition().getName(), true, false, true));
        } else {
            displayData.add(new StudyInfoPanelLine("Study Event", seBean.getStudyEventDefinition().getName(), true, false, false));
        }
        displayData.add(new StudyInfoPanelLine("<b>Status: </b>", seBean.getSubjectEventStatus().getName(), false, false, false));
        ArrayList displayCRFs = dseBean.getDisplayEventCRFs();
        int count = 0;
        Iterator displayIt = displayCRFs.iterator();
        while (displayIt.hasNext()) {
            DisplayEventCRFBean dec = (DisplayEventCRFBean) displayIt.next();
            if (count == displayCRFs.size() - 1 && dseBean.getUncompletedCRFs().size() == 0) {
                // it's the current crf
                if (ecb != null && ecb.getId() == dec.getEventCRF().getId()) {
                    displayData.add(new StudyInfoPanelLine("" + getStageImageText(dec.getStage()), "<span class='alert'>" + dec.getEventCRF().getCrf().getName() + " " + dec.getEventCRF().getCrfVersion().getName() + "</span>", false, true, true));
                } else {
                    displayData.add(new StudyInfoPanelLine("" + getStageImageText(dec.getStage()), dec.getEventCRF().getCrf().getName() + " " + dec.getEventCRF().getCrfVersion().getName(), false, true, false));
                }
            } else {
                if (ecb != null && ecb.getId() == dec.getEventCRF().getId()) {
                    displayData.add(new StudyInfoPanelLine("" + getStageImageText(dec.getStage()), "<span class='alert'>" + dec.getEventCRF().getCrf().getName() + " " + dec.getEventCRF().getCrfVersion().getName() + "</span>", false, false, true));
                } else {
                    displayData.add(new StudyInfoPanelLine("" + getStageImageText(dec.getStage()), dec.getEventCRF().getCrf().getName() + " " + dec.getEventCRF().getCrfVersion().getName(), false, false, false));
                }
            }
            count++;
        }
        count = 0;
        ArrayList uncompleted = dseBean.getUncompletedCRFs();
        Iterator uncompIt = uncompleted.iterator();
        while (uncompIt.hasNext()) {
            DisplayEventDefinitionCRFBean dedc = (DisplayEventDefinitionCRFBean) uncompIt.next();
            if (count == uncompleted.size() - 1) {
                if (ecb != null && ecb.getId() == dedc.getEventCRF().getId() && ecb.getCrf().getId() == dedc.getEventCRF().getCrf().getId()) {
                    // logger.info("ecb id*******" + ecb.getId() +
                    // dedc.getEventCRF().getId());
                    displayData.add(new StudyInfoPanelLine("<img src='images/icon_NotStarted.gif' alt='Not Started'/>", "<span class='alert'>" + dedc.getEdc().getCrf().getName() + "</span>", false, true, true));
                } else {
                    displayData.add(new StudyInfoPanelLine("<img src='images/icon_NotStarted.gif' alt='Not Started'/>", dedc.getEdc().getCrf().getName(), false, true, false));
                }
            } else {
                if (ecb != null && ecb.getId() == dedc.getEventCRF().getId()) {
                    // logger.info("ecb id*******" + ecb.getId() +
                    // dedc.getEventCRF().getId());
                    displayData.add(new StudyInfoPanelLine("<img src='images/icon_NotStarted.gif' alt='Not Started'/>", "<span class='alert'>" + dedc.getEdc().getCrf().getName() + "</span>", false, false, true));
                } else {
                    displayData.add(new StudyInfoPanelLine("<img src='images/icon_NotStarted.gif' alt='Not Started'/>", dedc.getEdc().getCrf().getName(), false, false, false));
                }
            }
            count++;
        }
    }
    return displayData;
}

Example 45 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class StudyEventDAO method findAllByStudyEventDefinitionAndCrfOids.

public ArrayList findAllByStudyEventDefinitionAndCrfOids(String studyEventDefinitionOid, String crfOrCrfVersionOid) {
    this.setTypesExpected(true);
    HashMap<Integer, Object> variables = new HashMap<Integer, Object>();
    variables.put(Integer.valueOf(1), studyEventDefinitionOid);
    variables.put(Integer.valueOf(2), crfOrCrfVersionOid);
    variables.put(Integer.valueOf(3), crfOrCrfVersionOid);
    String sql = digester.getQuery("findAllByStudyEventDefinitionAndCrfOids");
    ArrayList alist = this.select(sql, variables);
    ArrayList al = new ArrayList();
    Iterator it = alist.iterator();
    while (it.hasNext()) {
        StudyEventBean eb = (StudyEventBean) this.getEntityFromHashMap((HashMap) it.next(), true);
        al.add(eb);
    }
    return al;
}