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Example 26 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class ListDiscNotesSubjectTableFactory method setDataAndLimitVariables.

@Override
public void setDataAndLimitVariables(TableFacade tableFacade) {
    StudyBean study = this.getStudyBean();
    Limit limit = tableFacade.getLimit();
    ListDiscNotesSubjectFilter subjectFilter = getSubjectFilter(limit);
    subjectFilter.addFilter("dn.discrepancy_note_type_id", this.discNoteType);
    StringBuffer constraints = new StringBuffer();
    if (this.discNoteType > 0 && this.discNoteType < 10) {
        constraints.append(" and dn.discrepancy_note_type_id=" + this.discNoteType);
    }
    if (this.resolutionStatusIds != null && this.resolutionStatusIds.size() > 0) {
        String s = " and (";
        for (Integer resolutionStatusId : this.resolutionStatusIds) {
            s += "dn.resolution_status_id = " + resolutionStatusId + " or ";
        }
        s = s.substring(0, s.length() - 3) + " )";
        subjectFilter.addFilter("dn.resolution_status_id", s);
        constraints.append(s);
    }
    if (!limit.isComplete()) {
        int totalRows = getStudySubjectDAO().getCountWithFilter(subjectFilter, study);
        tableFacade.setTotalRows(totalRows);
    }
    ListDiscNotesSubjectSort subjectSort = getSubjectSort(limit);
    int rowStart = limit.getRowSelect().getRowStart();
    int rowEnd = limit.getRowSelect().getRowEnd();
    Collection<StudySubjectBean> items = getStudySubjectDAO().getWithFilterAndSort(study, subjectFilter, subjectSort, rowStart, rowEnd);
    Collection<HashMap<Object, Object>> theItems = new ArrayList<HashMap<Object, Object>>();
    boolean hasDN = false;
    for (StudySubjectBean studySubjectBean : items) {
        HashMap<Object, Object> theItem = new HashMap<Object, Object>();
        theItem.put("studySubject", studySubjectBean);
        theItem.put("studySubject.label", studySubjectBean.getLabel());
        theItem.put("studySubject.status", studySubjectBean.getStatus());
        theItem.put("enrolledAt", ((StudyBean) getStudyDAO().findByPK(studySubjectBean.getStudyId())).getIdentifier());
        // Get All study events for this study subject and then put list in
        // HashMap with study event definition id as
        // key and a list of study events as the value.
        List<StudyEventBean> allStudyEventsForStudySubject = getStudyEventDAO().findAllByStudySubject(studySubjectBean);
        HashMap<Integer, List<StudyEventBean>> allStudyEventsForStudySubjectBySedId = new HashMap<Integer, List<StudyEventBean>>();
        theItem.put("isSignable", isSignable(allStudyEventsForStudySubject));
        for (StudyEventBean studyEventBean : allStudyEventsForStudySubject) {
            if (allStudyEventsForStudySubjectBySedId.get(studyEventBean.getStudyEventDefinitionId()) == null) {
                ArrayList<StudyEventBean> a = new ArrayList<StudyEventBean>();
                a.add(studyEventBean);
                allStudyEventsForStudySubjectBySedId.put(studyEventBean.getStudyEventDefinitionId(), a);
            } else {
                allStudyEventsForStudySubjectBySedId.get(studyEventBean.getStudyEventDefinitionId()).add(studyEventBean);
            }
        }
        for (StudyEventDefinitionBean studyEventDefinition : getStudyEventDefinitions()) {
            List<StudyEventBean> studyEvents = allStudyEventsForStudySubjectBySedId.get(studyEventDefinition.getId());
            SubjectEventStatus subjectEventStatus = null;
            HashMap<ResolutionStatus, Integer> discCounts = new HashMap<ResolutionStatus, Integer>();
            studyEvents = studyEvents == null ? new ArrayList<StudyEventBean>() : studyEvents;
            if (studyEvents.size() < 1) {
                subjectEventStatus = SubjectEventStatus.NOT_SCHEDULED;
            } else {
                for (StudyEventBean studyEventBean : studyEvents) {
                    discCounts = countAll(discCounts, studyEventBean, constraints, study.isSite(study.getParentStudyId()));
                    hasDN = hasDN == false ? discCounts.size() > 0 : hasDN;
                    if (studyEventBean.getSampleOrdinal() == 1) {
                        subjectEventStatus = studyEventBean.getSubjectEventStatus();
                    // break;
                    }
                }
            }
            theItem.put("sed_" + studyEventDefinition.getId() + "_discCounts", discCounts);
            theItem.put("sed_" + studyEventDefinition.getId(), subjectEventStatus.getId());
            theItem.put("sed_" + studyEventDefinition.getId() + "_studyEvents", studyEvents);
            theItem.put("sed_" + studyEventDefinition.getId() + "_object", studyEventDefinition);
        }
        theItems.add(theItem);
    }
    // Do not forget to set the items back on the tableFacade.
    tableFacade.setItems(theItems);
    setStudyHasDiscNotes(hasDN);
}
Also used : HashMap(java.util.HashMap) ArrayList(java.util.ArrayList) StudyEventDefinitionBean(org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean) StudyEventBean(org.akaza.openclinica.bean.managestudy.StudyEventBean) SubjectEventStatus(org.akaza.openclinica.bean.core.SubjectEventStatus) ResolutionStatus(org.akaza.openclinica.bean.core.ResolutionStatus) List(java.util.List) ArrayList(java.util.ArrayList) ListDiscNotesSubjectFilter(org.akaza.openclinica.dao.managestudy.ListDiscNotesSubjectFilter) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) ListDiscNotesSubjectSort(org.akaza.openclinica.dao.managestudy.ListDiscNotesSubjectSort) StudySubjectBean(org.akaza.openclinica.bean.managestudy.StudySubjectBean) Limit(org.jmesa.limit.Limit)

Example 27 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class ListDiscNotesForCRFTableFactory method setDataAndLimitVariables.

@SuppressWarnings("unchecked")
@Override
public void setDataAndLimitVariables(TableFacade tableFacade) {
    Limit limit = tableFacade.getLimit();
    ListDiscNotesForCRFFilter listDiscNotesForCRF = getListEventsForSubjectFilter(limit);
    listDiscNotesForCRF.addFilter("dn.discrepancy_note_type_id", this.discNoteType);
    StringBuffer constraints = new StringBuffer();
    if (this.discNoteType > 0 && this.discNoteType < 10) {
        constraints.append(" and dn.discrepancy_note_type_id=" + this.discNoteType);
    }
    if (this.resolutionStatusIds != null && this.resolutionStatusIds.size() > 0) {
        String s = " and (";
        for (Integer resolutionStatusId : this.resolutionStatusIds) {
            s += "dn.resolution_status_id = " + resolutionStatusId + " or ";
        }
        s = s.substring(0, s.length() - 3) + " )";
        listDiscNotesForCRF.addFilter("dn.resolution_status_id", s);
        constraints.append(s);
    }
    if (!limit.isComplete()) {
        int totalRows = getStudySubjectDAO().getCountWithFilter(listDiscNotesForCRF, getStudyBean());
        tableFacade.setTotalRows(totalRows);
    }
    ListDiscNotesForCRFSort eventsForSubjectSort = getListEventsForSubjectSort(limit);
    int rowStart = limit.getRowSelect().getRowStart();
    int rowEnd = limit.getRowSelect().getRowEnd();
    Collection<StudySubjectBean> items = getStudySubjectDAO().getWithFilterAndSort(getStudyBean(), listDiscNotesForCRF, eventsForSubjectSort, rowStart, rowEnd);
    Collection<HashMap<Object, Object>> theItems = new ArrayList<HashMap<Object, Object>>();
    boolean hasDN = false;
    for (StudySubjectBean studySubjectBean : items) {
        HashMap<Object, Object> theItem = new HashMap<Object, Object>();
        theItem.put("studySubject", studySubjectBean);
        theItem.put("studySubject.label", studySubjectBean.getLabel());
        theItem.put("studySubject.status", studySubjectBean.getStatus());
        SubjectBean subjectBean = (SubjectBean) getSubjectDAO().findByPK(studySubjectBean.getSubjectId());
        theItem.put("subject", subjectBean);
        theItem.put("subject.charGender", subjectBean.getGender());
        // Get EventCrfs for study Subject
        List<EventCRFBean> eventCrfs = getEventCRFDAO().findAllByStudySubject(studySubjectBean.getId());
        HashMap<String, EventCRFBean> crfAsKeyEventCrfAsValue = new HashMap<String, EventCRFBean>();
        for (EventCRFBean eventCRFBean : eventCrfs) {
            CRFBean crf = getCrfDAO().findByVersionId(eventCRFBean.getCRFVersionId());
            crfAsKeyEventCrfAsValue.put(crf.getId() + "_" + eventCRFBean.getStudyEventId(), eventCRFBean);
        }
        // Get the event Status
        List<StudyEventBean> eventsForStudySubjectAndEventDefinitions = getStudyEventDAO().findAllByDefinitionAndSubject(selectedStudyEventDefinition, studySubjectBean);
        List<DisplayBean> events = new ArrayList<DisplayBean>();
        // study event size < 1
        if (eventsForStudySubjectAndEventDefinitions.size() < 1) {
            DisplayBean d = new DisplayBean();
            d.getProps().put("event", null);
            d.getProps().put("event.status", SubjectEventStatus.NOT_SCHEDULED);
            d.getProps().put("event.startDate", null);
            for (int i = 0; i < getCrfs(selectedStudyEventDefinition).size(); i++) {
                CRFBean crf = getCrfs(selectedStudyEventDefinition).get(i);
                HashMap<ResolutionStatus, Integer> discCounts = new HashMap<ResolutionStatus, Integer>();
                d.getProps().put("crf_" + crf.getId(), DataEntryStage.UNCOMPLETED);
                d.getProps().put("crf_" + crf.getId() + "_eventCrf", null);
                d.getProps().put("crf_" + crf.getId() + "_crf", crf);
                d.getProps().put("crf_" + crf.getId() + "_eventDefinitionCrf", eventDefinitionCrfs.get(i));
                d.getProps().put("crf_" + crf.getId() + "_discCounts", discCounts);
                theItem.put("crf_" + crf.getId(), "");
            }
            events.add(d);
        }
        // study event size >0
        for (StudyEventBean studyEventBean : eventsForStudySubjectAndEventDefinitions) {
            DisplayBean d = new DisplayBean();
            d.getProps().put("event", studyEventBean);
            d.getProps().put("event.status", studyEventBean.getSubjectEventStatus());
            d.getProps().put("event.startDate", studyEventBean.getCreatedDate());
            for (int i = 0; i < getCrfs(selectedStudyEventDefinition).size(); i++) {
                CRFBean crf = getCrfs(selectedStudyEventDefinition).get(i);
                EventCRFBean eventCRFBean = crfAsKeyEventCrfAsValue.get(crf.getId() + "_" + studyEventBean.getId());
                HashMap<ResolutionStatus, Integer> discCounts = new HashMap<ResolutionStatus, Integer>();
                if (eventCRFBean != null) {
                    d.getProps().put("crf_" + crf.getId(), eventCRFBean.getStage());
                    d.getProps().put("crf_" + crf.getId() + "_eventCrf", eventCRFBean);
                    // List<DiscrepancyNoteBean> discs =
                    // getDiscrepancyNoteDAO().findAllByStudyEvent(studyEventBean);
                    List<DiscrepancyNoteBean> discs = getDiscrepancyNoteDAO().findAllParentItemNotesByEventCRFWithConstraints(eventCRFBean.getId(), constraints);
                    hasDN = hasDN == false ? discs != null && discs.size() > 0 : hasDN;
                    for (DiscrepancyNoteBean discrepancyNoteBean : discs) {
                        Integer value = discCounts.get(discrepancyNoteBean.getResStatus());
                        if (value != null) {
                            discCounts.put(discrepancyNoteBean.getResStatus(), ++value);
                        } else {
                            discCounts.put(discrepancyNoteBean.getResStatus(), 1);
                        }
                    }
                    d.getProps().put("crf_" + crf.getId() + "_discCounts", discCounts);
                } else {
                    d.getProps().put("crf_" + crf.getId(), DataEntryStage.UNCOMPLETED);
                    d.getProps().put("crf_" + crf.getId() + "_eventCrf", null);
                    d.getProps().put("crf_" + crf.getId() + "_discCounts", discCounts);
                }
                d.getProps().put("crf_" + crf.getId() + "_crf", crf);
                d.getProps().put("crf_" + crf.getId() + "_eventDefinitionCrf", eventDefinitionCrfs.get(i));
                theItem.put("crf_" + crf.getId(), "");
            }
            events.add(d);
        }
        theItem.put("events", events);
        theItem.put("event.status", "");
        theItem.put("event.startDate", "");
        theItems.add(theItem);
    }
    // Do not forget to set the items back on the tableFacade.
    tableFacade.setItems(theItems);
    this.setStudyHasDiscNotes(hasDN);
}
Also used : HashMap(java.util.HashMap) ArrayList(java.util.ArrayList) StudyEventBean(org.akaza.openclinica.bean.managestudy.StudyEventBean) ResolutionStatus(org.akaza.openclinica.bean.core.ResolutionStatus) EventCRFBean(org.akaza.openclinica.bean.submit.EventCRFBean) ListDiscNotesForCRFSort(org.akaza.openclinica.dao.managestudy.ListDiscNotesForCRFSort) ListDiscNotesForCRFFilter(org.akaza.openclinica.dao.managestudy.ListDiscNotesForCRFFilter) EventDefinitionCRFBean(org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean) EventCRFBean(org.akaza.openclinica.bean.submit.EventCRFBean) CRFBean(org.akaza.openclinica.bean.admin.CRFBean) SubjectBean(org.akaza.openclinica.bean.submit.SubjectBean) StudySubjectBean(org.akaza.openclinica.bean.managestudy.StudySubjectBean) StudySubjectBean(org.akaza.openclinica.bean.managestudy.StudySubjectBean) DiscrepancyNoteBean(org.akaza.openclinica.bean.managestudy.DiscrepancyNoteBean) Limit(org.jmesa.limit.Limit)

Example 28 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class MarkEventCRFCompleteServlet method processRequest.

/*
     * (non-Javadoc)
     *
     * @see org.akaza.openclinica.control.core.SecureController#processRequest()
     */
@Override
protected void processRequest() throws Exception {
    // FormDiscrepancyNotes discNotes =
    // (FormDiscrepancyNotes)session.getAttribute(AddNewSubjectServlet.
    // FORM_DISCREPANCY_NOTES_NAME);
    getEventCRFBean();
    getEventDefinitionCRFBean();
    DataEntryStage stage = ecb.getStage();
    request.setAttribute(TableOfContentsServlet.INPUT_EVENT_CRF_BEAN, ecb);
    // Page errorPage = Page.TABLE_OF_CONTENTS_SERVLET;
    Page errorPage = Page.LIST_STUDY_SUBJECTS_SERVLET;
    if (stage.equals(DataEntryStage.UNCOMPLETED) || stage.equals(DataEntryStage.DOUBLE_DATA_ENTRY_COMPLETE) || stage.equals(DataEntryStage.LOCKED)) {
        throw new InconsistentStateException(errorPage, respage.getString("not_mark_CRF_complete1"));
    }
    if (stage.equals(DataEntryStage.INITIAL_DATA_ENTRY_COMPLETE) || stage.equals(DataEntryStage.DOUBLE_DATA_ENTRY)) {
        if (!edcb.isDoubleEntry()) {
            throw new InconsistentStateException(errorPage, respage.getString("not_mark_CRF_complete2"));
        }
    }
    if (!isEachRequiredFieldFillout()) {
        throw new InconsistentStateException(errorPage, respage.getString("not_mark_CRF_complete4"));
    }
    if (ecb.getInterviewerName().trim().equals("")) {
        throw new InconsistentStateException(errorPage, respage.getString("not_mark_CRF_complete5"));
    }
    if (!fp.isSubmitted()) {
        DisplayTableOfContentsBean toc = TableOfContentsServlet.getDisplayBean(ecb, sm.getDataSource(), currentStudy);
        toc = TableOfContentsServlet.getDisplayBeanWithShownSections(sm.getDataSource(), toc, (DynamicsMetadataService) SpringServletAccess.getApplicationContext(getServletContext()).getBean("dynamicsMetadataService"));
        request.setAttribute(BEAN_DISPLAY, toc);
        resetPanel();
        panel.setStudyInfoShown(false);
        panel.setOrderedData(true);
        setToPanel(resword.getString("subject"), toc.getStudySubject().getLabel());
        setToPanel(resword.getString("study_event_definition"), toc.getStudyEventDefinition().getName());
        StudyEventBean seb = toc.getStudyEvent();
        setToPanel(resword.getString("location"), seb.getLocation());
        setToPanel(resword.getString("start_date"), seb.getDateStarted().toString());
        setToPanel(resword.getString("end_date"), seb.getDateEnded().toString());
        setToPanel(resword.getString("CRF"), toc.getCrf().getName());
        setToPanel(resword.getString("CRF_version"), toc.getCrfVersion().getName());
        forwardPage(Page.MARK_EVENT_CRF_COMPLETE);
    } else {
        boolean markComplete = fp.getString(INPUT_MARK_COMPLETE).equals(VALUE_YES);
        if (markComplete) {
            Status newStatus = ecb.getStatus();
            boolean ide = true;
            if (stage.equals(DataEntryStage.INITIAL_DATA_ENTRY) && edcb.isDoubleEntry()) {
                newStatus = Status.PENDING;
                ecb.setUpdaterId(ub.getId());
                ecb.setUpdatedDate(new Date());
                ecb.setDateCompleted(new Date());
            } else if (stage.equals(DataEntryStage.INITIAL_DATA_ENTRY) && !edcb.isDoubleEntry()) {
                newStatus = Status.UNAVAILABLE;
                ecb.setUpdaterId(ub.getId());
                ecb.setUpdatedDate(new Date());
                ecb.setDateCompleted(new Date());
                ecb.setDateValidateCompleted(new Date());
            } else if (stage.equals(DataEntryStage.INITIAL_DATA_ENTRY_COMPLETE) || stage.equals(DataEntryStage.DOUBLE_DATA_ENTRY)) {
                newStatus = Status.UNAVAILABLE;
                ecb.setDateValidateCompleted(new Date());
                ide = false;
            }
            ecb.setStatus(newStatus);
            ecb = (EventCRFBean) ecdao.update(ecb);
            ecdao.markComplete(ecb, ide);
            ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
            iddao.updateStatusByEventCRF(ecb, newStatus);
            // change status for event
            StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
            StudyEventBean seb = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
            seb.setUpdatedDate(new Date());
            seb.setUpdater(ub);
            EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
            ArrayList allCRFs = ecdao.findAllByStudyEvent(seb);
            ArrayList allEDCs = edcdao.findAllActiveByEventDefinitionId(seb.getStudyEventDefinitionId());
            boolean eventCompleted = true;
            for (int i = 0; i < allCRFs.size(); i++) {
                EventCRFBean ec = (EventCRFBean) allCRFs.get(i);
                if (!ec.getStatus().equals(Status.UNAVAILABLE)) {
                    eventCompleted = false;
                    break;
                }
            }
            if (eventCompleted && allCRFs.size() >= allEDCs.size()) {
                seb.setSubjectEventStatus(SubjectEventStatus.COMPLETED);
            }
            seb = (StudyEventBean) sedao.update(seb);
            addPageMessage(respage.getString("event_CRF_marked_complete"));
            request.setAttribute(EnterDataForStudyEventServlet.INPUT_EVENT_ID, String.valueOf(ecb.getStudyEventId()));
            forwardPage(Page.ENTER_DATA_FOR_STUDY_EVENT_SERVLET);
        } else {
            request.setAttribute(DataEntryServlet.INPUT_IGNORE_PARAMETERS, Boolean.TRUE);
            addPageMessage(respage.getString("event_CRF_not_marked_complete"));
            forwardPage(errorPage);
        }
    }
}
Also used : Status(org.akaza.openclinica.bean.core.Status) SubjectEventStatus(org.akaza.openclinica.bean.core.SubjectEventStatus) ArrayList(java.util.ArrayList) Page(org.akaza.openclinica.view.Page) DisplayTableOfContentsBean(org.akaza.openclinica.bean.submit.DisplayTableOfContentsBean) EventDefinitionCRFDAO(org.akaza.openclinica.dao.managestudy.EventDefinitionCRFDAO) StudyEventBean(org.akaza.openclinica.bean.managestudy.StudyEventBean) InconsistentStateException(org.akaza.openclinica.web.InconsistentStateException) Date(java.util.Date) ItemDataDAO(org.akaza.openclinica.dao.submit.ItemDataDAO) DataEntryStage(org.akaza.openclinica.bean.core.DataEntryStage) EventCRFBean(org.akaza.openclinica.bean.submit.EventCRFBean) StudyEventDAO(org.akaza.openclinica.dao.managestudy.StudyEventDAO) DynamicsMetadataService(org.akaza.openclinica.service.crfdata.DynamicsMetadataService)

Example 29 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class TableOfContentsServlet method createEventCRF.

/**
 * Creates a new Event CRF or update the exsiting one, that is, an event CRF
 * can be created but not item data yet, in this case, still consider it is
 * not started(called uncompleted before)
 *
 * @return
 * @throws Exception
 */
private EventCRFBean createEventCRF() throws Exception {
    EventCRFBean ecb;
    ecdao = new EventCRFDAO(sm.getDataSource());
    int crfVersionId = fp.getInt(INPUT_CRF_VERSION_ID);
    int studyEventId = fp.getInt(INPUT_STUDY_EVENT_ID);
    int eventDefinitionCRFId = fp.getInt(INPUT_EVENT_DEFINITION_CRF_ID);
    int subjectId = fp.getInt(INPUT_SUBJECT_ID);
    int eventCRFId = fp.getInt(INPUT_EVENT_CRF_ID);
    logger.info("Creating event CRF within Table of Contents.  Study id: " + currentStudy.getId() + "; CRF Version id: " + crfVersionId + "; Study Event id: " + studyEventId + "; Event Definition CRF id: " + eventDefinitionCRFId + "; Subject: " + subjectId);
    StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
    StudySubjectBean ssb = ssdao.findBySubjectIdAndStudy(subjectId, currentStudy);
    if (!ssb.isActive()) {
        throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("trying_to_begin_DE1"));
    }
    StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
    StudyEventDefinitionBean sedb = seddao.findByEventDefinitionCRFId(eventDefinitionCRFId);
    if (!ssb.isActive() || !sedb.isActive()) {
        throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("trying_to_begin_DE2"));
    }
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    EntityBean eb = cvdao.findByPK(crfVersionId);
    if (!eb.isActive()) {
        throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("trying_to_begin_DE3"));
    }
    StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    StudyEventBean sEvent = (StudyEventBean) sedao.findByPK(studyEventId);
    StudyBean studyWithSED = currentStudy;
    if (currentStudy.getParentStudyId() > 0) {
        studyWithSED = new StudyBean();
        studyWithSED.setId(currentStudy.getParentStudyId());
    }
    AuditableEntityBean aeb = sedao.findByPKAndStudy(studyEventId, studyWithSED);
    if (!aeb.isActive()) {
        throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("trying_to_begin_DE4"));
    }
    ecb = new EventCRFBean();
    if (eventCRFId == 0) {
        // no event CRF created yet
        ecb.setAnnotations("");
        ecb.setCreatedDate(new Date());
        ecb.setCRFVersionId(crfVersionId);
        ecb.setInterviewerName("");
        if (sEvent.getDateStarted() != null) {
            // default date
            ecb.setDateInterviewed(sEvent.getDateStarted());
        } else {
            ecb.setDateInterviewed(null);
        }
        ecb.setOwnerId(ub.getId());
        ecb.setStatus(Status.AVAILABLE);
        ecb.setCompletionStatusId(1);
        ecb.setStudySubjectId(ssb.getId());
        ecb.setStudyEventId(studyEventId);
        ecb.setValidateString("");
        ecb.setValidatorAnnotations("");
        ecb = (EventCRFBean) ecdao.create(ecb);
        logger.info("CREATED EVENT CRF");
    } else {
        // there is an event CRF already, only need to update
        ecb = (EventCRFBean) ecdao.findByPK(eventCRFId);
        ecb.setCRFVersionId(crfVersionId);
        ecb.setUpdatedDate(new Date());
        ecb.setUpdater(ub);
        ecb = (EventCRFBean) ecdao.update(ecb);
    }
    if (!ecb.isActive()) {
        throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("new_event_CRF_not_created_database_error"));
    } else {
        sEvent.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED);
        sEvent.setUpdater(ub);
        sEvent.setUpdatedDate(new Date());
        sedao.update(sEvent);
    }
    return ecb;
}
Also used : CRFVersionDAO(org.akaza.openclinica.dao.submit.CRFVersionDAO) AuditableEntityBean(org.akaza.openclinica.bean.core.AuditableEntityBean) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) StudyEventDefinitionBean(org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean) StudyEventBean(org.akaza.openclinica.bean.managestudy.StudyEventBean) StudySubjectDAO(org.akaza.openclinica.dao.managestudy.StudySubjectDAO) InconsistentStateException(org.akaza.openclinica.web.InconsistentStateException) Date(java.util.Date) EventCRFBean(org.akaza.openclinica.bean.submit.EventCRFBean) DisplayEventCRFBean(org.akaza.openclinica.bean.submit.DisplayEventCRFBean) StudySubjectBean(org.akaza.openclinica.bean.managestudy.StudySubjectBean) StudyEventDefinitionDAO(org.akaza.openclinica.dao.managestudy.StudyEventDefinitionDAO) EntityBean(org.akaza.openclinica.bean.core.EntityBean) AuditableEntityBean(org.akaza.openclinica.bean.core.AuditableEntityBean) StudyEventDAO(org.akaza.openclinica.dao.managestudy.StudyEventDAO) EventCRFDAO(org.akaza.openclinica.dao.submit.EventCRFDAO)

Example 30 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class OdmController method getODM.

private ODM getODM(String studyOID, String subjectKey) {
    ODM odm = new ODM();
    String ssoid = subjectKey;
    if (ssoid == null) {
        return null;
    }
    CRFVersionDAO versionDAO = new CRFVersionDAO(dataSource);
    StudyDAO studyDAO = new StudyDAO(dataSource);
    StudySubjectDAO studySubjectDAO = new StudySubjectDAO(dataSource);
    EventCRFDAO eventCRFDAO = new EventCRFDAO(dataSource);
    ItemDataDAO itemDataDAO = new ItemDataDAO(dataSource);
    CRFDAO crfDAO = new CRFDAO(dataSource);
    List<ODMcomplexTypeDefinitionFormData> formDatas = new ArrayList<>();
    try {
        // Retrieve crfs for next event
        StudySubjectBean studySubjectBean = studySubjectDAO.findByOid(ssoid);
        ParticipantEventService participantEventService = new ParticipantEventService(dataSource);
        StudyEventBean nextEvent = participantEventService.getNextParticipantEvent(studySubjectBean);
        if (nextEvent != null) {
            logger.debug("Found event: " + nextEvent.getName() + " - ID: " + nextEvent.getId());
            List<EventCRFBean> eventCrfs = eventCRFDAO.findAllByStudyEvent(nextEvent);
            StudyBean study = studyDAO.findByOid(studyOID);
            if (!mayProceed(studyOID, studySubjectBean))
                return odm;
            List<EventDefinitionCRFBean> eventDefCrfs = participantEventService.getEventDefCrfsForStudyEvent(studySubjectBean, nextEvent);
            for (EventDefinitionCRFBean eventDefCrf : eventDefCrfs) {
                if (eventDefCrf.isParticipantForm()) {
                    EventCRFBean eventCRF = participantEventService.getExistingEventCRF(studySubjectBean, nextEvent, eventDefCrf);
                    boolean itemDataExists = false;
                    boolean validStatus = true;
                    CRFVersionBean crfVersion = null;
                    if (eventCRF != null) {
                        if (eventCRF.getStatus().getId() != 1 && eventCRF.getStatus().getId() != 2)
                            validStatus = false;
                        if (itemDataDAO.findAllByEventCRFId(eventCRF.getId()).size() > 0)
                            itemDataExists = true;
                        crfVersion = (CRFVersionBean) versionDAO.findByPK(eventCRF.getCRFVersionId());
                    } else
                        crfVersion = (CRFVersionBean) versionDAO.findByPK(eventDefCrf.getDefaultVersionId());
                    if (validStatus) {
                        String formUrl = null;
                        if (!itemDataExists)
                            formUrl = createEnketoUrl(studyOID, crfVersion, nextEvent, ssoid);
                        else
                            formUrl = createEditUrl(studyOID, crfVersion, nextEvent, ssoid);
                        formDatas.add(getFormDataPerCrf(crfVersion, nextEvent, eventCrfs, crfDAO, formUrl, itemDataExists));
                    }
                }
            }
            return createOdm(study, studySubjectBean, nextEvent, formDatas);
        } else {
            logger.debug("Unable to find next event for subject.");
        }
    } catch (Exception e) {
        logger.error(e.getMessage());
        logger.error(ExceptionUtils.getStackTrace(e));
    }
    return odm;
}
Also used : EventCRFDAO(org.akaza.openclinica.dao.submit.EventCRFDAO) CRFDAO(org.akaza.openclinica.dao.admin.CRFDAO) CRFVersionDAO(org.akaza.openclinica.dao.submit.CRFVersionDAO) ParticipantEventService(org.akaza.openclinica.service.ParticipantEventService) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) ArrayList(java.util.ArrayList) StudyEventBean(org.akaza.openclinica.bean.managestudy.StudyEventBean) StudySubjectDAO(org.akaza.openclinica.dao.managestudy.StudySubjectDAO) ItemDataDAO(org.akaza.openclinica.dao.submit.ItemDataDAO) ODMcomplexTypeDefinitionFormData(org.cdisc.ns.odm.v130_api.ODMcomplexTypeDefinitionFormData) EventCRFBean(org.akaza.openclinica.bean.submit.EventCRFBean) StudySubjectBean(org.akaza.openclinica.bean.managestudy.StudySubjectBean) ODM(org.cdisc.ns.odm.v130_api.ODM) CRFVersionBean(org.akaza.openclinica.bean.submit.CRFVersionBean) EventDefinitionCRFBean(org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean) StudyDAO(org.akaza.openclinica.dao.managestudy.StudyDAO) EventCRFDAO(org.akaza.openclinica.dao.submit.EventCRFDAO)

Aggregations

StudyEventBean (org.akaza.openclinica.bean.managestudy.StudyEventBean)162 ArrayList (java.util.ArrayList)103 StudyEventDAO (org.akaza.openclinica.dao.managestudy.StudyEventDAO)91 EventCRFBean (org.akaza.openclinica.bean.submit.EventCRFBean)90 EventCRFDAO (org.akaza.openclinica.dao.submit.EventCRFDAO)74 StudySubjectBean (org.akaza.openclinica.bean.managestudy.StudySubjectBean)71 StudyEventDefinitionBean (org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean)62 StudySubjectDAO (org.akaza.openclinica.dao.managestudy.StudySubjectDAO)62 StudyEventDefinitionDAO (org.akaza.openclinica.dao.managestudy.StudyEventDefinitionDAO)60 StudyBean (org.akaza.openclinica.bean.managestudy.StudyBean)58 Date (java.util.Date)52 HashMap (java.util.HashMap)50 StudyDAO (org.akaza.openclinica.dao.managestudy.StudyDAO)47 EventDefinitionCRFDAO (org.akaza.openclinica.dao.managestudy.EventDefinitionCRFDAO)43 ItemDataBean (org.akaza.openclinica.bean.submit.ItemDataBean)37 ItemDataDAO (org.akaza.openclinica.dao.submit.ItemDataDAO)37 EventDefinitionCRFBean (org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean)36 CRFVersionBean (org.akaza.openclinica.bean.submit.CRFVersionBean)34 CRFVersionDAO (org.akaza.openclinica.dao.submit.CRFVersionDAO)34 CRFDAO (org.akaza.openclinica.dao.admin.CRFDAO)31