Examples with StudyEventBean org.akaza.openclinica.bean.managestudy.StudyEventBean used on opensource projects

Example 36 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class SDVUtil method prepareSDVSelectElements.

public void prepareSDVSelectElements(HttpServletRequest request, StudyBean studyBean) {
    // Study event statuses
    List<String> studyEventStatuses = new ArrayList<String>();
    for (org.akaza.openclinica.domain.Status stat : org.akaza.openclinica.domain.Status.values()) {
        studyEventStatuses.add(stat.getDescription());
    }
    request.setAttribute("studyEventStatuses", studyEventStatuses);
    // SDV requirements
    List<String> sdvRequirements = new ArrayList<String>();
    for (SourceDataVerification sdvRequire : SourceDataVerification.values()) {
        sdvRequirements.add(sdvRequire.getDescription());
    }
    request.setAttribute("sdvRequirements", SourceDataVerification.values());
    // study event definitions
    StudyEventDefinitionDAO studyEventDefinitionDAO = new StudyEventDefinitionDAO(dataSource);
    List<StudyEventDefinitionBean> studyEventDefinitionBeans = new ArrayList<StudyEventDefinitionBean>();
    studyEventDefinitionBeans = studyEventDefinitionDAO.findAllByStudy(studyBean);
    request.setAttribute("studyEventDefinitions", studyEventDefinitionBeans);
    // study event status
    request.setAttribute("studyEventStatuses", Status.toArrayList());
    // event CRF status
    request.setAttribute("eventCRFDStatuses", SubjectEventStatus.toArrayList());
    StudyEventDAO studyEventDAO = new StudyEventDAO(dataSource);
    List<StudyEventBean> studyEventBeans = studyEventDAO.findAllByStudy(studyBean);
    List<EventCRFBean> eventCRFBeans = getAllEventCRFs(studyEventBeans);
    SortedSet<String> eventCRFNames = new TreeSet<String>();
    for (EventCRFBean bean : eventCRFBeans) {
        eventCRFNames.add(getCRFName(bean.getCRFVersionId()));
    }
    request.setAttribute("eventCRFNames", eventCRFNames);
}

Example 37 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class SDVUtil method filterEventCRFs.

public List<EventCRFBean> filterEventCRFs(List<EventCRFBean> eventCRFBeans, BindingResult bindingResult) {
    /*
         * study_subject_id=Subject+D&eventCRF=0&studyEventDefinition=0&
         * studyEventStatus=-1&eventCRFStatus=-1&eventcrfSDVStatus=None&
         * sdvRequirement=0&startUpdatedDate=&endDate=&submit=Apply+Filter
         */
    List<EventCRFBean> newList = new ArrayList<EventCRFBean>();
    if (eventCRFBeans == null || eventCRFBeans.isEmpty() || bindingResult == null) {
        return eventCRFBeans;
    }
    SdvFilterDataBean filterBean = (SdvFilterDataBean) bindingResult.getTarget();
    StudySubjectBean studySubjectBean = null;
    StudyEventBean studyEventBean = null;
    StudySubjectDAO studySubjectDAO = new StudySubjectDAO(dataSource);
    StudyEventDAO studyEventDAO = new StudyEventDAO(dataSource);
    boolean studySub = true, studyEventDef = true, studyEventStatus = true, eventCRFStatusBool = true, eventcrfSDVStatus = true, eventCRFNameBool = true, upDatedDateBool = true, sdvRequirementBool = true;
    for (EventCRFBean eventCBean : eventCRFBeans) {
        // filter study subject
        if (filterBean.getStudy_subject_id().length() > 0) {
            studySubjectBean = (StudySubjectBean) studySubjectDAO.findByPK(eventCBean.getStudySubjectId());
            studySub = filterBean.getStudy_subject_id().equalsIgnoreCase(studySubjectBean.getLabel());
        }
        if (filterBean.getStudyEventDefinition() > 0) {
            studyEventBean = (StudyEventBean) studyEventDAO.findByPK(eventCBean.getStudyEventId());
            studyEventDef = filterBean.getStudyEventDefinition() == studyEventBean.getStudyEventDefinitionId();
        }
        // Event CRF status
        if (filterBean.getStudyEventStatus() > 0) {
            studyEventStatus = filterBean.getStudyEventStatus() == eventCBean.getStatus().getId();
        }
        // Event CRF subject event status
        if (filterBean.getEventCRFStatus() > 0) {
            studyEventBean = (StudyEventBean) studyEventDAO.findByPK(eventCBean.getStudyEventId());
            eventCRFStatusBool = filterBean.getEventCRFStatus() == studyEventBean.getSubjectEventStatus().getId();
        }
        // Event CRF SDV status; true or false
        if (!filterBean.getEventcrfSDVStatus().equalsIgnoreCase("N/A")) {
            boolean sdvBool = filterBean.getEventcrfSDVStatus().equalsIgnoreCase("complete");
            eventcrfSDVStatus = eventCBean.isSdvStatus() == sdvBool;
        }
        // Event CRF name match
        if (filterBean.getEventCRFName().length() > 0) {
            String tmpName = getCRFName(eventCBean.getCRFVersionId());
            eventCRFNameBool = tmpName.equalsIgnoreCase(filterBean.getEventCRFName());
        }
        // event CRF updated date
        if (eventCBean.getUpdatedDate() != null && filterBean.getStartUpdatedDate() != null && filterBean.getEndDate() != null) {
            GregorianCalendar calStart = new GregorianCalendar();
            calStart.setTime(filterBean.getStartUpdatedDate());
            GregorianCalendar calendarEnd = new GregorianCalendar();
            calendarEnd.setTime(filterBean.getEndDate());
            GregorianCalendar calendarNow = new GregorianCalendar();
            calendarNow.setTime(eventCBean.getUpdatedDate());
            upDatedDateBool = calendarNow.after(calStart) && calendarNow.before(calendarEnd) || calendarNow.equals(calStart) || calendarNow.equals(calendarEnd);
        }
        if (upDatedDateBool && eventCRFNameBool && eventcrfSDVStatus && eventCRFStatusBool && studyEventStatus && studyEventDef && studySub) {
            newList.add(eventCBean);
        }
    }
    return newList;
}

Example 38 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class OpenRosaServices method getSchedule.

@GET
@Path("/{studyOID}/getSchedule")
@Produces(MediaType.APPLICATION_XML)
public String getSchedule(@Context HttpServletRequest request, @Context HttpServletResponse response, @Context ServletContext context, @PathParam("studyOID") String studyOID, @RequestHeader("Authorization") String authorization) throws Exception {
    String ssoid = request.getParameter("studySubjectOID");
    StudySubjectDAO ssdao = new StudySubjectDAO<String, ArrayList>(dataSource);
    StudySubjectBean ssBean = ssdao.findByOid(ssoid);
    if (!mayProceedSubmission(studyOID, ssBean))
        return null;
    HashMap<String, String> urlCache = (HashMap<String, String>) context.getAttribute("pformURLCache");
    context.getAttribute("subjectContextCache");
    if (ssoid == null) {
        return "<error>studySubjectOID is null :(</error>";
    }
    try {
        // Need to retrieve crf's for next event
        StudyEventDAO eventDAO = new StudyEventDAO(getDataSource());
        StudyEventBean nextEvent = (StudyEventBean) eventDAO.getNextScheduledEvent(ssoid);
        CRFVersionDAO versionDAO = new CRFVersionDAO(getDataSource());
        ArrayList<CRFVersionBean> crfs = versionDAO.findDefCRFVersionsByStudyEvent(nextEvent.getStudyEventDefinitionId());
        PFormCache cache = PFormCache.getInstance(context);
        for (CRFVersionBean crfVersion : crfs) {
            String enketoURL = cache.getPFormURL(studyOID, crfVersion.getOid());
            String contextHash = cache.putSubjectContext(ssoid, String.valueOf(nextEvent.getStudyEventDefinitionId()), String.valueOf(nextEvent.getSampleOrdinal()), crfVersion.getOid());
        }
    } catch (Exception e) {
        LOGGER.debug(e.getMessage());
        LOGGER.debug(ExceptionUtils.getStackTrace(e));
        return "<error>" + e.getMessage() + "</error>";
    }
    response.setHeader("Content-Type", "text/xml; charset=UTF-8");
    response.setHeader("Content-Disposition", "attachment; filename=\"schedule.xml\";");
    response.setContentType("text/xml; charset=utf-8");
    return "<result>success</result>";
}

Example 39 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class ImportCRFDataService method fetchEventCRFStatuses.

/*
     * purpose: Build a map of EventCRFs and the statuses they should have post-import. Assumes EventCRFs have been
     * created for "Not Started" forms.
     */
public void fetchEventCRFStatuses(ODMContainer odmContainer, HashMap<Integer, String> importedCRFStatuses) {
    EventCRFDAO eventCrfDAO = new EventCRFDAO(ds);
    StudySubjectDAO studySubjectDAO = new StudySubjectDAO(ds);
    StudyEventDefinitionDAO studyEventDefinitionDAO = new StudyEventDefinitionDAO(ds);
    StudyDAO studyDAO = new StudyDAO(ds);
    StudyEventDAO studyEventDAO = new StudyEventDAO(ds);
    String studyOID = odmContainer.getCrfDataPostImportContainer().getStudyOID();
    StudyBean studyBean = studyDAO.findByOid(studyOID);
    ArrayList<SubjectDataBean> subjectDataBeans = odmContainer.getCrfDataPostImportContainer().getSubjectData();
    for (SubjectDataBean subjectDataBean : subjectDataBeans) {
        ArrayList<StudyEventDataBean> studyEventDataBeans = subjectDataBean.getStudyEventData();
        StudySubjectBean studySubjectBean = studySubjectDAO.findByOidAndStudy(subjectDataBean.getSubjectOID(), studyBean.getId());
        for (StudyEventDataBean studyEventDataBean : studyEventDataBeans) {
            ArrayList<FormDataBean> formDataBeans = studyEventDataBean.getFormData();
            String sampleOrdinal = studyEventDataBean.getStudyEventRepeatKey() == null ? "1" : studyEventDataBean.getStudyEventRepeatKey();
            StudyEventDefinitionBean studyEventDefinitionBean = studyEventDefinitionDAO.findByOidAndStudy(studyEventDataBean.getStudyEventOID(), studyBean.getId(), studyBean.getParentStudyId());
            logger.info("find all by def and subject " + studyEventDefinitionBean.getName() + " study subject " + studySubjectBean.getName());
            StudyEventBean studyEventBean = (StudyEventBean) studyEventDAO.findByStudySubjectIdAndDefinitionIdAndOrdinal(studySubjectBean.getId(), studyEventDefinitionBean.getId(), Integer.parseInt(sampleOrdinal));
            for (FormDataBean formDataBean : formDataBeans) {
                CRFVersionDAO crfVersionDAO = new CRFVersionDAO(ds);
                ArrayList<CRFVersionBean> crfVersionBeans = crfVersionDAO.findAllByOid(formDataBean.getFormOID());
                for (CRFVersionBean crfVersionBean : crfVersionBeans) {
                    ArrayList<EventCRFBean> eventCrfBeans = eventCrfDAO.findByEventSubjectVersion(studyEventBean, studySubjectBean, crfVersionBean);
                    for (EventCRFBean ecb : eventCrfBeans) {
                        Integer ecbId = new Integer(ecb.getId());
                        if (!importedCRFStatuses.keySet().contains(ecbId) && formDataBean.getEventCRFStatus() != null) {
                            importedCRFStatuses.put(ecb.getId(), formDataBean.getEventCRFStatus());
                        }
                    }
                }
            }
        }
    }
}

Example 40 with StudyEventBean

use of org.akaza.openclinica.bean.managestudy.StudyEventBean in project OpenClinica by OpenClinica.

the class ImportCRFDataService method fetchEventCRFBeans.

/*
     * purpose: look up EventCRFBeans by the following: Study Subject, Study Event, CRF Version, using the
     * findByEventSubjectVersion method in EventCRFDAO. May return more than one, hmm.
     */
public List<EventCRFBean> fetchEventCRFBeans(ODMContainer odmContainer, UserAccountBean ub) {
    ArrayList<EventCRFBean> eventCRFBeans = new ArrayList<EventCRFBean>();
    ArrayList<Integer> eventCRFBeanIds = new ArrayList<Integer>();
    EventCRFDAO eventCrfDAO = new EventCRFDAO(ds);
    StudySubjectDAO studySubjectDAO = new StudySubjectDAO(ds);
    StudyEventDefinitionDAO studyEventDefinitionDAO = new StudyEventDefinitionDAO(ds);
    StudyDAO studyDAO = new StudyDAO(ds);
    StudyEventDAO studyEventDAO = new StudyEventDAO(ds);
    UpsertOnBean upsert = odmContainer.getCrfDataPostImportContainer().getUpsertOn();
    // If Upsert bean is not present, create one with default settings
    if (upsert == null)
        upsert = new UpsertOnBean();
    String studyOID = odmContainer.getCrfDataPostImportContainer().getStudyOID();
    StudyBean studyBean = studyDAO.findByOid(studyOID);
    ArrayList<SubjectDataBean> subjectDataBeans = odmContainer.getCrfDataPostImportContainer().getSubjectData();
    for (SubjectDataBean subjectDataBean : subjectDataBeans) {
        ArrayList<StudyEventDataBean> studyEventDataBeans = subjectDataBean.getStudyEventData();
        StudySubjectBean studySubjectBean = studySubjectDAO.findByOidAndStudy(subjectDataBean.getSubjectOID(), studyBean.getId());
        for (StudyEventDataBean studyEventDataBean : studyEventDataBeans) {
            ArrayList<FormDataBean> formDataBeans = studyEventDataBean.getFormData();
            String sampleOrdinal = studyEventDataBean.getStudyEventRepeatKey() == null ? "1" : studyEventDataBean.getStudyEventRepeatKey();
            StudyEventDefinitionBean studyEventDefinitionBean = studyEventDefinitionDAO.findByOidAndStudy(studyEventDataBean.getStudyEventOID(), studyBean.getId(), studyBean.getParentStudyId());
            logger.info("find all by def and subject " + studyEventDefinitionBean.getName() + " study subject " + studySubjectBean.getName());
            for (FormDataBean formDataBean : formDataBeans) {
                CRFVersionDAO crfVersionDAO = new CRFVersionDAO(ds);
                ArrayList<CRFVersionBean> crfVersionBeans = crfVersionDAO.findAllByOid(formDataBean.getFormOID());
                // studySubjectBean.getId(),Integer.parseInt(sampleOrdinal));
                for (CRFVersionBean crfVersionBean : crfVersionBeans) {
                    // iterate the studyeventbeans here
                    // for (StudyEventBean studyEventBean : studyEventBeans) {
                    StudyEventBean studyEventBean = (StudyEventBean) studyEventDAO.findByStudySubjectIdAndDefinitionIdAndOrdinal(studySubjectBean.getId(), studyEventDefinitionBean.getId(), Integer.parseInt(sampleOrdinal));
                    // locked
                    if (studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.LOCKED) || studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.SIGNED) || studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.STOPPED)) {
                        return null;
                    }
                    ArrayList<EventCRFBean> eventCrfBeans = eventCrfDAO.findByEventSubjectVersion(studyEventBean, studySubjectBean, crfVersionBean);
                    // event crf, yet.
                    if (eventCrfBeans.isEmpty()) {
                        logger.debug("   found no event crfs from Study Event id " + studyEventBean.getId() + ", location " + studyEventBean.getLocation());
                        // necessary, avoiding false-positives
                        if ((studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.SCHEDULED) || studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.DATA_ENTRY_STARTED) || studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.COMPLETED)) && upsert.isNotStarted()) {
                            EventCRFBean newEventCrfBean = new EventCRFBean();
                            newEventCrfBean.setStudyEventId(studyEventBean.getId());
                            newEventCrfBean.setStudySubjectId(studySubjectBean.getId());
                            newEventCrfBean.setCRFVersionId(crfVersionBean.getId());
                            newEventCrfBean.setDateInterviewed(new Date());
                            newEventCrfBean.setOwner(ub);
                            newEventCrfBean.setInterviewerName(ub.getName());
                            // place
                            newEventCrfBean.setCompletionStatusId(1);
                            // filler
                            newEventCrfBean.setStatus(Status.AVAILABLE);
                            newEventCrfBean.setStage(DataEntryStage.INITIAL_DATA_ENTRY);
                            // these will be updated later in the
                            // workflow
                            newEventCrfBean = (EventCRFBean) eventCrfDAO.create(newEventCrfBean);
                            // eventCrfBeans.add(newEventCrfBean);
                            logger.debug("   created and added new event crf");
                            if (!eventCRFBeanIds.contains(newEventCrfBean.getId())) {
                                eventCRFBeans.add(newEventCrfBean);
                                eventCRFBeanIds.add(newEventCrfBean.getId());
                            }
                        }
                    } else {
                    }
                    for (EventCRFBean ecb : eventCrfBeans) {
                        Integer ecbId = new Integer(ecb.getId());
                        if ((upsert.isDataEntryStarted() && ecb.getStage().equals(DataEntryStage.INITIAL_DATA_ENTRY)) || (upsert.isDataEntryComplete() && ecb.getStage().equals(DataEntryStage.DOUBLE_DATA_ENTRY_COMPLETE)))
                            if (!eventCRFBeanIds.contains(ecbId)) {
                                eventCRFBeans.add(ecb);
                                eventCRFBeanIds.add(ecbId);
                            }
                    }
                }
            }
        }
    }
    // iteration one
    return eventCRFBeans;
}