Examples with SourceDataVerification org.akaza.openclinica.domain.SourceDataVerification used on opensource projects

Example 1 with SourceDataVerification

use of org.akaza.openclinica.domain.SourceDataVerification in project OpenClinica by OpenClinica.

the class SDVUtil method prepareSDVSelectElements.

public void prepareSDVSelectElements(HttpServletRequest request, StudyBean studyBean) {
    // Study event statuses
    List<String> studyEventStatuses = new ArrayList<String>();
    for (org.akaza.openclinica.domain.Status stat : org.akaza.openclinica.domain.Status.values()) {
        studyEventStatuses.add(stat.getDescription());
    }
    request.setAttribute("studyEventStatuses", studyEventStatuses);
    // SDV requirements
    List<String> sdvRequirements = new ArrayList<String>();
    for (SourceDataVerification sdvRequire : SourceDataVerification.values()) {
        sdvRequirements.add(sdvRequire.getDescription());
    }
    request.setAttribute("sdvRequirements", SourceDataVerification.values());
    // study event definitions
    StudyEventDefinitionDAO studyEventDefinitionDAO = new StudyEventDefinitionDAO(dataSource);
    List<StudyEventDefinitionBean> studyEventDefinitionBeans = new ArrayList<StudyEventDefinitionBean>();
    studyEventDefinitionBeans = studyEventDefinitionDAO.findAllByStudy(studyBean);
    request.setAttribute("studyEventDefinitions", studyEventDefinitionBeans);
    // study event status
    request.setAttribute("studyEventStatuses", Status.toArrayList());
    // event CRF status
    request.setAttribute("eventCRFDStatuses", SubjectEventStatus.toArrayList());
    StudyEventDAO studyEventDAO = new StudyEventDAO(dataSource);
    List<StudyEventBean> studyEventBeans = studyEventDAO.findAllByStudy(studyBean);
    List<EventCRFBean> eventCRFBeans = getAllEventCRFs(studyEventBeans);
    SortedSet<String> eventCRFNames = new TreeSet<String>();
    for (EventCRFBean bean : eventCRFBeans) {
        eventCRFNames.add(getCRFName(bean.getCRFVersionId()));
    }
    request.setAttribute("eventCRFNames", eventCRFNames);
}

Example 2 with SourceDataVerification

use of org.akaza.openclinica.domain.SourceDataVerification in project OpenClinica by OpenClinica.

the class SDVRequirementFilter method getOptions.

@Override
protected List<Option> getOptions() {
    List<Option> options = new ArrayList<Option>();
    String optionA = SourceDataVerification.AllREQUIRED.toString() + " & " + SourceDataVerification.PARTIALREQUIRED.toString();
    options.add(new Option(optionA, optionA));
    for (SourceDataVerification sdv : SourceDataVerification.values()) {
        if (sdv != SourceDataVerification.NOTAPPLICABLE) {
            options.add(new Option(sdv.toString(), sdv.toString()));
        }
    }
    return options;
}

Example 3 with SourceDataVerification

use of org.akaza.openclinica.domain.SourceDataVerification in project OpenClinica by OpenClinica.

the class SDVUtil method getSubjectRows.

/*
     * Generate the rows for the study table. Each row represents an Event CRF.
     */
public Collection<SubjectSDVContainer> getSubjectRows(List<EventCRFBean> eventCRFBeans, HttpServletRequest request) {
    if (eventCRFBeans == null || eventCRFBeans.isEmpty()) {
        return new ArrayList<SubjectSDVContainer>();
    }
    getEventNamesForEventCRFs(eventCRFBeans);
    StudySubjectDAO studySubjectDAO = new StudySubjectDAO(dataSource);
    SubjectDAO subjectDAO = new SubjectDAO(dataSource);
    StudyDAO studyDAO = new StudyDAO(dataSource);
    StudyEventDAO studyEventDAO = new StudyEventDAO(dataSource);
    EventDefinitionCRFDAO eventDefinitionCRFDAO = new EventDefinitionCRFDAO(dataSource);
    StudySubjectBean studySubjectBean = null;
    SubjectBean subjectBean = null;
    StudyEventBean studyEventBean = null;
    StudyBean studyBean = null;
    EventDefinitionCRFBean eventDefinitionCRFBean = null;
    Collection<SubjectSDVContainer> allRows = new ArrayList<SubjectSDVContainer>();
    SubjectSDVContainer tempSDVBean = null;
    StringBuilder actions = new StringBuilder("");
    for (EventCRFBean crfBean : eventCRFBeans) {
        tempSDVBean = new SubjectSDVContainer();
        studySubjectBean = (StudySubjectBean) studySubjectDAO.findByPK(crfBean.getStudySubjectId());
        studyEventBean = (StudyEventBean) studyEventDAO.findByPK(crfBean.getStudyEventId());
        subjectBean = (SubjectBean) subjectDAO.findByPK(studySubjectBean.getSubjectId());
        // find out the study's identifier
        studyBean = (StudyBean) studyDAO.findByPK(studySubjectBean.getStudyId());
        tempSDVBean.setStudyIdentifier(studyBean.getIdentifier());
        eventDefinitionCRFBean = eventDefinitionCRFDAO.findByStudyEventIdAndCRFVersionId(studyBean, studyEventBean.getId(), crfBean.getCRFVersionId());
        SourceDataVerification sourceData = eventDefinitionCRFBean.getSourceDataVerification();
        if (sourceData != null) {
            tempSDVBean.setSdvRequirementDefinition(sourceData.toString());
        } else {
            tempSDVBean.setSdvRequirementDefinition("");
        }
        tempSDVBean.setCrfNameVersion(getCRFName(crfBean.getCRFVersionId()) + "/ " + getCRFVersionName(crfBean.getCRFVersionId()));
        if (crfBean.getStatus() != null) {
            Integer status = crfBean.getStage().getId();
            if (studyEventBean.getSubjectEventStatus() == SubjectEventStatus.LOCKED || studyEventBean.getSubjectEventStatus() == SubjectEventStatus.STOPPED || studyEventBean.getSubjectEventStatus() == SubjectEventStatus.SKIPPED) {
                status = DataEntryStage.LOCKED.getId();
            }
            tempSDVBean.setCrfStatus(getCRFStatusIconPath(status, request, studySubjectBean.getId(), crfBean.getId(), crfBean.getCRFVersionId()));
        }
        tempSDVBean.setStudyEventStatus(studyEventBean.getStatus().getName());
        // TODO: I18N Date must be formatted properly
        Locale locale = LocaleResolver.getLocale(request);
        SimpleDateFormat sdformat = I18nFormatUtil.getDateFormat(locale);
        if (studySubjectBean.getEnrollmentDate() != null) {
            tempSDVBean.setEnrollmentDate(sdformat.format(studySubjectBean.getEnrollmentDate()));
        } else {
        // tempSDVBean.setEnrollmentDate("unknown");
        }
        // TODO: I18N Date must be formatted properly
        // Fix OC 1888
        StudyEventDAO sedao = new StudyEventDAO(dataSource);
        StudyEventBean seBean = (StudyEventBean) sedao.findByPK(crfBean.getStudyEventId());
        tempSDVBean.setEventDate(sdformat.format(seBean.getDateStarted()));
        // if (crfBean.getCreatedDate() != null) {
        // tempSDVBean.setEventDate(sdformat.format(crfBean.getCreatedDate()));
        // } else {
        // //tempSDVBean.setEventDate("unknown");
        // 
        // }
        // crfBean.getEventName()
        tempSDVBean.setEventName(crfBean.getEventName());
        // The checkbox is next to the study subject id
        StringBuilder sdvStatus = new StringBuilder("");
        // to cancel this transaction."
        if (crfBean.isSdvStatus() && studyBean.getStatus().isLocked()) {
            sdvStatus.append(getIconForSdvStatusPrefix()).append("DoubleCheck").append(ICON_FORCRFSTATUS_SUFFIX).append("</a></center>");
        } else if (crfBean.isSdvStatus() && !studyBean.getStatus().isLocked()) {
            sdvStatus.append("<center><a href='javascript:void(0)' onclick='prompt(document.sdvForm,");
            sdvStatus.append(crfBean.getId());
            sdvStatus.append(")'>");
            sdvStatus.append(getIconForSdvStatusPrefix()).append("DoubleCheck").append(ICON_FORCRFSTATUS_SUFFIX).append("</a></center>");
        } else {
            sdvStatus.append("<center><input style='margin-right: 5px' type='checkbox' ").append("class='sdvCheck'").append(" name='").append(CHECKBOX_NAME).append(crfBean.getId()).append("' /></center>");
        }
        // sdvStatus.append(studySubjectBean.getLabel());
        tempSDVBean.setSdvStatus(sdvStatus.toString());
        tempSDVBean.setStudySubjectId(studySubjectBean.getLabel());
        if (subjectBean != null) {
            tempSDVBean.setPersonId(subjectBean.getUniqueIdentifier());
        } else {
            tempSDVBean.setPersonId("");
        }
        // studySubjectBean.getSecondaryLabel()
        tempSDVBean.setSecondaryId(studySubjectBean.getSecondaryLabel());
        String statusName = studySubjectBean.getStatus().getName();
        int statusId = studySubjectBean.getStatus().getId();
        if (statusName != null) {
            tempSDVBean.setStudySubjectStatus(statusName);
        }
        // TODO: I18N Date must be formatted properly
        if (crfBean.getUpdatedDate() != null) {
            tempSDVBean.setLastUpdatedDate(sdformat.format(crfBean.getUpdatedDate()));
        } else {
            tempSDVBean.setLastUpdatedDate("unknown");
        }
        if (crfBean.getUpdater() != null) {
            tempSDVBean.setLastUpdatedBy(crfBean.getUpdater().getFirstName() + " " + crfBean.getUpdater().getLastName());
        }
        actions = new StringBuilder("");
        // append("<input type='hidden' name='crfId' value='").append(crfBean.getId()).append("'").append("/> ")
        if (!crfBean.isSdvStatus()) {
            StringBuilder jsCodeString = new StringBuilder("this.form.method='GET'; this.form.action='").append(request.getContextPath()).append("/pages/handleSDVGet").append("';").append("this.form.crfId.value='").append(crfBean.getId()).append("';").append("this.form.submit();");
            if (!studyBean.getStatus().isLocked()) {
                actions.append("<input type=\"submit\" class=\"button_medium\" value=\"SDV\" name=\"sdvSubmit\" ").append("onclick=\"").append(jsCodeString.toString()).append("\" />");
            }
        }
        // Only implement the view icon if it is a event crf request
        /*
             * String bool = (String) request.getAttribute("isViewSubjectRequest");
             * if(! "y".equalsIgnoreCase(bool)){
             * StringBuilder urlPrefix = new
             * StringBuilder("<a href='javascript:void(0)' onclick=\"document.location.href='");
             * StringBuilder path = new
             * StringBuilder(request.getContextPath()).append("/pages/viewAllSubjectSDV?studyId=").append(
             * studySubjectBean.getStudyId()).append("&studySubjectId=");
             * path.append(studySubjectBean.getId());
             * 
             * urlPrefix.append(path).append("'\">");
             * actions.append("&nbsp;").append(urlPrefix).append(VIEW_ICON_HTML).append("</a>");
             * }
             */
        tempSDVBean.setSdvStatusActions(actions.toString());
        allRows.add(tempSDVBean);
    }
    return allRows;
}