Examples with ODM org.cdisc.ns.odm.v130_api.ODM used on opensource projects

Example 1 with ODM

use of org.cdisc.ns.odm.v130_api.ODM in project OpenClinica by OpenClinica.

the class OdmController method getODM.

private ODM getODM(String studyOID, String subjectKey) {
    ODM odm = new ODM();
    String ssoid = subjectKey;
    if (ssoid == null) {
        return null;
    }
    CRFVersionDAO versionDAO = new CRFVersionDAO(dataSource);
    StudyDAO studyDAO = new StudyDAO(dataSource);
    StudySubjectDAO studySubjectDAO = new StudySubjectDAO(dataSource);
    EventCRFDAO eventCRFDAO = new EventCRFDAO(dataSource);
    ItemDataDAO itemDataDAO = new ItemDataDAO(dataSource);
    CRFDAO crfDAO = new CRFDAO(dataSource);
    List<ODMcomplexTypeDefinitionFormData> formDatas = new ArrayList<>();
    try {
        // Retrieve crfs for next event
        StudySubjectBean studySubjectBean = studySubjectDAO.findByOid(ssoid);
        ParticipantEventService participantEventService = new ParticipantEventService(dataSource);
        StudyEventBean nextEvent = participantEventService.getNextParticipantEvent(studySubjectBean);
        if (nextEvent != null) {
            logger.debug("Found event: " + nextEvent.getName() + " - ID: " + nextEvent.getId());
            List<EventCRFBean> eventCrfs = eventCRFDAO.findAllByStudyEvent(nextEvent);
            StudyBean study = studyDAO.findByOid(studyOID);
            if (!mayProceed(studyOID, studySubjectBean))
                return odm;
            List<EventDefinitionCRFBean> eventDefCrfs = participantEventService.getEventDefCrfsForStudyEvent(studySubjectBean, nextEvent);
            for (EventDefinitionCRFBean eventDefCrf : eventDefCrfs) {
                if (eventDefCrf.isParticipantForm()) {
                    EventCRFBean eventCRF = participantEventService.getExistingEventCRF(studySubjectBean, nextEvent, eventDefCrf);
                    boolean itemDataExists = false;
                    boolean validStatus = true;
                    CRFVersionBean crfVersion = null;
                    if (eventCRF != null) {
                        if (eventCRF.getStatus().getId() != 1 && eventCRF.getStatus().getId() != 2)
                            validStatus = false;
                        if (itemDataDAO.findAllByEventCRFId(eventCRF.getId()).size() > 0)
                            itemDataExists = true;
                        crfVersion = (CRFVersionBean) versionDAO.findByPK(eventCRF.getCRFVersionId());
                    } else
                        crfVersion = (CRFVersionBean) versionDAO.findByPK(eventDefCrf.getDefaultVersionId());
                    if (validStatus) {
                        String formUrl = null;
                        if (!itemDataExists)
                            formUrl = createEnketoUrl(studyOID, crfVersion, nextEvent, ssoid);
                        else
                            formUrl = createEditUrl(studyOID, crfVersion, nextEvent, ssoid);
                        formDatas.add(getFormDataPerCrf(crfVersion, nextEvent, eventCrfs, crfDAO, formUrl, itemDataExists));
                    }
                }
            }
            return createOdm(study, studySubjectBean, nextEvent, formDatas);
        } else {
            logger.debug("Unable to find next event for subject.");
        }
    } catch (Exception e) {
        logger.error(e.getMessage());
        logger.error(ExceptionUtils.getStackTrace(e));
    }
    return odm;
}

Example 2 with ODM

use of org.cdisc.ns.odm.v130_api.ODM in project OpenClinica by OpenClinica.

the class OdmStudySubjectController method createOdm.

private ODM createOdm(StudyBean studyBean, StudySubjectBean studySubjectBean) {
    ODM odm = new ODM();
    ODMcomplexTypeDefinitionClinicalData clinicalData = null;
    if (studyBean != null) {
        clinicalData = generateClinicalData(studyBean);
        if (studySubjectBean != null) {
            ODMcomplexTypeDefinitionSubjectData subjectData = generateSubjectData(studySubjectBean);
            clinicalData.getSubjectData().add(subjectData);
        }
        odm.getClinicalData().add(clinicalData);
    }
    return odm;
}

Example 3 with ODM

use of org.cdisc.ns.odm.v130_api.ODM in project OpenClinica by OpenClinica.

the class OdmController method createOdm.

private ODM createOdm(StudyBean study, StudySubjectBean studySubjectBean, StudyEventBean nextEvent, List<ODMcomplexTypeDefinitionFormData> formDatas) {
    ODM odm = new ODM();
    ODMcomplexTypeDefinitionClinicalData clinicalData = generateClinicalData(study);
    ODMcomplexTypeDefinitionSubjectData subjectData = generateSubjectData(studySubjectBean);
    ODMcomplexTypeDefinitionStudyEventData studyEventData = generateStudyEventData(nextEvent);
    // Create the object graph
    studyEventData.getFormData().addAll(formDatas);
    subjectData.getStudyEventData().add(studyEventData);
    clinicalData.getSubjectData().add(subjectData);
    odm.getClinicalData().add(clinicalData);
    return odm;
}