Examples with StudyEventDefinitionBean org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean used on opensource projects

Example 46 with StudyEventDefinitionBean

use of org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean in project OpenClinica by OpenClinica.

the class ViewStudySubjectServlet method getDisplayStudyEventsForStudySubject.

public static ArrayList<DisplayStudyEventBean> getDisplayStudyEventsForStudySubject(StudySubjectBean studySub, DataSource ds, UserAccountBean ub, StudyUserRoleBean currentRole) {
    StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(ds);
    StudyEventDAO sedao = new StudyEventDAO(ds);
    EventCRFDAO ecdao = new EventCRFDAO(ds);
    EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(ds);
    StudySubjectDAO ssdao = new StudySubjectDAO(ds);
    StudyDAO sdao = new StudyDAO(ds);
    ArrayList events = sedao.findAllByStudySubject(studySub);
    ArrayList displayEvents = new ArrayList();
    for (int i = 0; i < events.size(); i++) {
        StudyEventBean event = (StudyEventBean) events.get(i);
        StudySubjectBean studySubject = (StudySubjectBean) ssdao.findByPK(event.getStudySubjectId());
        StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(event.getStudyEventDefinitionId());
        event.setStudyEventDefinition(sed);
        // find all active crfs in the definition
        StudyBean study = (StudyBean) sdao.findByPK(studySubject.getStudyId());
        ArrayList eventDefinitionCRFs = (ArrayList) edcdao.findAllActiveByEventDefinitionId(study, sed.getId());
        ArrayList eventCRFs = ecdao.findAllByStudyEvent(event);
        // construct info needed on view study event page
        DisplayStudyEventBean de = new DisplayStudyEventBean();
        de.setStudyEvent(event);
        de.setDisplayEventCRFs(getDisplayEventCRFs(ds, eventCRFs, eventDefinitionCRFs, ub, currentRole, event.getSubjectEventStatus(), study));
        ArrayList al = getUncompletedCRFs(ds, eventDefinitionCRFs, eventCRFs, event.getSubjectEventStatus());
        populateUncompletedCRFsWithCRFAndVersions(ds, al);
        de.setUncompletedCRFs(al);
        de.setMaximumSampleOrdinal(sedao.getMaxSampleOrdinal(sed, studySubject));
        displayEvents.add(de);
    // event.setEventCRFs(createAllEventCRFs(eventCRFs,
    // eventDefinitionCRFs));
    }
    return displayEvents;
}

Example 47 with StudyEventDefinitionBean

use of org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean in project OpenClinica by OpenClinica.

the class ViewSectionDataEntryRESTUrlServlet method processRequest.

@Override
public void processRequest(HttpServletRequest request, HttpServletResponse response) throws Exception {
    FormProcessor fp = new FormProcessor(request);
    StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
    boolean isSubmitted = false;
    EventDefinitionCRFBean edcb = (EventDefinitionCRFBean) request.getAttribute(EVENT_DEF_CRF_BEAN);
    if (!fp.getString("exitTo").equals("")) {
        request.setAttribute("exitTo", request.getContextPath() + "/" + fp.getString("exitTo"));
    }
    int crfVersionId = fp.getInt("crfVersionId", true);
    Integer sectionId = (Integer) request.getAttribute("sectionId");
    if (sectionId == null || sectionId == 0) {
        sectionId = new Integer(1);
    }
    int eventCRFId = fp.getInt(EVENT_CRF_ID, true);
    int studySubjectId = fp.getInt("studySubjectId", true);
    String action = fp.getString("action");
    HttpSession session = request.getSession();
    String fromResolvingNotes = fp.getString("fromResolvingNotes", true);
    if (StringUtil.isBlank(fromResolvingNotes)) {
        session.removeAttribute(ViewNotesServlet.WIN_LOCATION);
        session.removeAttribute(ViewNotesServlet.NOTES_TABLE);
    }
    // Added for
    request.setAttribute("studySubjectId", studySubjectId + "");
    // Mantis
    // Issue
    // 2268
    // Added
    request.setAttribute("crfListPage", fp.getString("crfListPage"));
    // for
    // Mantis
    // Issue
    // 2268
    // Added for
    request.setAttribute("eventId", fp.getString("eventId"));
    // Mantis
    // Issue
    // 2268
    // YW <<
    int sedId = fp.getInt("sedId");
    request.setAttribute("sedId", sedId + "");
    int crfId = fp.getInt("crfId");
    // BWP>> ... try to get crfId from crfVersionId
    if (crfId == 0 && crfVersionId > 0) {
        CRFVersionDAO crfVDao = new CRFVersionDAO(getDataSource());
        CRFVersionBean crvVBean = (CRFVersionBean) crfVDao.findByPK(crfVersionId);
        if (crvVBean != null) {
            crfId = crvVBean.getCrfId();
        }
    }
    // YW >>
    // int eventDefinitionCRFId = fp.getInt("eventDefinitionCRFId");
    Integer eventDefinitionCRFId = (Integer) (request.getAttribute("eventDefinitionCRFId"));
    EventDefinitionCRFDAO eventCrfDao = new EventDefinitionCRFDAO(getDataSource());
    edcb = (EventDefinitionCRFBean) eventCrfDao.findByPK(eventDefinitionCRFId);
    if (eventCRFId == 0 && edcb.getStudyId() != currentStudy.getParentStudyId() && edcb.getStudyId() != currentStudy.getId()) {
        addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_study_contact_sysadmin"), request);
        throw new InsufficientPermissionException(Page.MENU_SERVLET, resexception.getString("not_director"), "1");
    }
    if (crfId == 0 && eventDefinitionCRFId > 0) {
        // eventCrfDao.findByPK(eventDefinitionCRFId);
        if (edcb != null) {
            crfId = edcb.getCrfId();
        }
    }
    request.setAttribute("crfId", crfId + "");
    request.setAttribute("eventDefinitionCRFId", eventDefinitionCRFId + "");
    String printVersion = fp.getString("print");
    // BWP>> this has to be removed for CRFs that do not display an
    // interviewdate
    // for a particular event
    session.removeAttribute("presetValues");
    EventCRFDAO ecdao = new EventCRFDAO(getDataSource());
    SectionDAO sdao = new SectionDAO(getDataSource());
    String age = "";
    if (sectionId == 0 && crfVersionId == 0 && eventCRFId == 0) {
        addPageMessage(respage.getString("please_choose_a_CRF_to_view"), request);
        // forwardPage(Page.SUBMIT_DATA_SERVLET);
        forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET, request, response);
        // >> changed tbh, 06/2009
        return;
    }
    if (studySubjectId > 0) {
        StudySubjectDAO ssdao = new StudySubjectDAO(getDataSource());
        StudySubjectBean sub = (StudySubjectBean) ssdao.findByPK(studySubjectId);
        request.setAttribute("studySubject", sub);
    }
    if (eventCRFId > 0) {
        // for event crf, the input crfVersionId from url =0
        ecb = (EventCRFBean) ecdao.findByPK(eventCRFId);
        StudyEventDAO sedao = new StudyEventDAO(getDataSource());
        StudyEventBean event = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
        // event.getSubjectEventStatus().getName());
        if (event.getSubjectEventStatus().equals(SubjectEventStatus.LOCKED)) {
            request.setAttribute("isLocked", "yes");
        // System.out.println("this event crf is locked");
        } else // @pgawade 28-Aug-2012 Reverted the change no. 2 in
        // https://issuetracker.openclinica.com/view.php?id=12343#c56722
        {
            request.setAttribute("isLocked", "no");
        }
        if (studySubjectId <= 0) {
            studySubjectId = event.getStudySubjectId();
            request.setAttribute("studySubjectId", studySubjectId + "");
        }
        // Get the status/number of item discrepancy notes
        DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(getDataSource());
        ArrayList<DiscrepancyNoteBean> allNotes = new ArrayList<DiscrepancyNoteBean>();
        List<DiscrepancyNoteBean> eventCrfNotes = new ArrayList<DiscrepancyNoteBean>();
        List<DiscrepancyNoteThread> noteThreads = new ArrayList<DiscrepancyNoteThread>();
        // if (eventCRFId > 0) {
        // this method finds only parent notes
        allNotes = dndao.findAllTopNotesByEventCRF(eventCRFId);
        // add interviewer.jsp related notes to this Collection
        eventCrfNotes = dndao.findOnlyParentEventCRFDNotesFromEventCRF(ecb);
        if (!eventCrfNotes.isEmpty()) {
            allNotes.addAll(eventCrfNotes);
            // make sure a necessary request attribute "hasNameNote" is set
            // properly
            this.setAttributeForInterviewerDNotes(eventCrfNotes, request);
        }
        // }
        // Create disc note threads out of the various notes
        DiscrepancyNoteUtil dNoteUtil = new DiscrepancyNoteUtil();
        noteThreads = dNoteUtil.createThreadsOfParents(allNotes, getDataSource(), currentStudy, null, -1, true);
        // variables that provide values for the CRF discrepancy note header
        int updatedNum = 0;
        int openNum = 0;
        int closedNum = 0;
        int resolvedNum = 0;
        int notAppNum = 0;
        DiscrepancyNoteBean tempBean;
        for (DiscrepancyNoteThread dnThread : noteThreads) {
            /*
                 * 3014: do not count parent beans, only the last child disc
                 * note of the thread.
                 */
            tempBean = dnThread.getLinkedNoteList().getLast();
            if (tempBean != null) {
                if (ResolutionStatus.UPDATED.equals(tempBean.getResStatus())) {
                    updatedNum++;
                } else if (ResolutionStatus.OPEN.equals(tempBean.getResStatus())) {
                    openNum++;
                } else if (ResolutionStatus.CLOSED.equals(tempBean.getResStatus())) {
                    // if (dn.getParentDnId() > 0){
                    closedNum++;
                // }
                } else if (ResolutionStatus.RESOLVED.equals(tempBean.getResStatus())) {
                    // if (dn.getParentDnId() > 0){
                    resolvedNum++;
                // }
                } else if (ResolutionStatus.NOT_APPLICABLE.equals(tempBean.getResStatus())) {
                    notAppNum++;
                }
            }
        }
        request.setAttribute("updatedNum", updatedNum + "");
        request.setAttribute("openNum", openNum + "");
        request.setAttribute("closedNum", closedNum + "");
        request.setAttribute("resolvedNum", resolvedNum + "");
        request.setAttribute("notAppNum", notAppNum + "");
        DisplayTableOfContentsBean displayBean = TableOfContentsServlet.getDisplayBean(ecb, getDataSource(), currentStudy);
        // Make sure that the interviewDate in the eventCRF is properly
        // formatted
        // for viewSectionDataEntry.jsp --> interviewer.jsp
        // int studyEventId = (Integer)request.getAttribute("studyEvent");
        // SimpleDateFormat formatter = new SimpleDateFormat("MM/dd/yyyy");
        //
        Date tmpDate = displayBean.getEventCRF().getDateInterviewed();
        String formattedInterviewerDate;
        try {
            DateFormat local_df = new SimpleDateFormat(resformat.getString("date_format_string"), ResourceBundleProvider.getLocale());
            formattedInterviewerDate = local_df.format(tmpDate);
        } catch (Exception e) {
            formattedInterviewerDate = "";
        }
        HashMap presetVals = (HashMap) session.getAttribute("presetValues");
        if (presetVals == null) {
            presetVals = new HashMap();
            session.setAttribute("presetValues", presetVals);
        }
        presetVals.put("interviewDate", formattedInterviewerDate);
        request.setAttribute("toc", displayBean);
        ArrayList sections = displayBean.getSections();
        request.setAttribute("sectionNum", sections.size() + "");
        if (!sections.isEmpty()) {
            if (sectionId == 0) {
                SectionBean firstSec = (SectionBean) sections.get(0);
                sectionId = firstSec.getId();
            }
        } else {
            addPageMessage(respage.getString("there_are_no_sections_ins_this_CRF"), request);
            // forwardPage(Page.SUBMIT_DATA_SERVLET);
            forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET, request, response);
            // >> changed tbh, 06/2009
            return;
        }
    } else if (crfVersionId > 0) {
        // for viewing blank CRF
        DisplayTableOfContentsBean displayBean = ViewTableOfContentServlet.getDisplayBean(getDataSource(), crfVersionId);
        request.setAttribute("toc", displayBean);
        ArrayList sections = displayBean.getSections();
        request.setAttribute("sectionNum", sections.size() + "");
        if (!sections.isEmpty()) {
            if (sectionId == 0) {
                SectionBean firstSec = (SectionBean) sections.get(0);
                sectionId = firstSec.getId();
            }
        } else {
            addPageMessage(respage.getString("there_are_no_sections_ins_this_CRF_version"), request);
            if (eventCRFId == 0) {
                forwardPage(Page.CRF_LIST_SERVLET, request, response);
            } else {
                // forwardPage(Page.SUBMIT_DATA_SERVLET);
                forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET, request, response);
            // >> changed tbh, 06/2009
            }
            return;
        }
    }
    sb = (SectionBean) sdao.findByPK(sectionId);
    if (eventCRFId == 0) {
        ecb = new EventCRFBean();
        ecb.setCRFVersionId(sb.getCRFVersionId());
        if (currentStudy.getParentStudyId() > 0) {
            // this is a site,find parent
            StudyDAO studydao = new StudyDAO(getDataSource());
            StudyBean parentStudy = (StudyBean) studydao.findByPK(currentStudy.getParentStudyId());
            request.setAttribute("studyTitle", parentStudy.getName());
            request.setAttribute("siteTitle", currentStudy.getName());
        } else {
            request.setAttribute("studyTitle", currentStudy.getName());
        }
    } else {
        ecb = (EventCRFBean) ecdao.findByPK(eventCRFId);
        request.setAttribute(INPUT_EVENT_CRF, ecb);
        request.setAttribute(SECTION_BEAN, sb);
        // This is the StudySubjectBean
        StudySubjectDAO ssdao = new StudySubjectDAO(getDataSource());
        StudySubjectBean sub = (StudySubjectBean) ssdao.findByPK(ecb.getStudySubjectId());
        // This is the SubjectBean
        SubjectDAO subjectDao = new SubjectDAO(getDataSource());
        int subjectId = sub.getSubjectId();
        int studyId = sub.getStudyId();
        SubjectBean subject = (SubjectBean) subjectDao.findByPK(subjectId);
        // Let us process the age
        if (currentStudy.getStudyParameterConfig().getCollectDob().equals("1")) {
            StudyEventDAO sedao = new StudyEventDAO(getDataSource());
            StudyEventBean se = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
            StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(getDataSource());
            StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(se.getStudyEventDefinitionId());
            se.setStudyEventDefinition(sed);
            request.setAttribute("studyEvent", se);
            // YW 11-16-2007 enrollment-date is used for computing age
            age = Utils.getInstacne().processAge(sub.getEnrollmentDate(), subject.getDateOfBirth());
        }
        // Get the study then the parent study
        StudyDAO studydao = new StudyDAO(getDataSource());
        StudyBean study = (StudyBean) studydao.findByPK(studyId);
        if (study.getParentStudyId() > 0) {
            // this is a site,find parent
            StudyBean parentStudy = (StudyBean) studydao.findByPK(study.getParentStudyId());
            request.setAttribute("studyTitle", parentStudy.getName());
            request.setAttribute("siteTitle", study.getName());
        } else {
            request.setAttribute("studyTitle", study.getName());
        }
        request.setAttribute("studySubject", sub);
        request.setAttribute("subject", subject);
        request.setAttribute("age", age);
    }
    // FormBeanUtil formUtil = new FormBeanUtil();
    // DisplaySectionBean newDisplayBean = new DisplaySectionBean();
    boolean hasItemGroup = false;
    // we will look into db to see if any repeating items for this CRF
    // section
    ItemGroupDAO igdao = new ItemGroupDAO(getDataSource());
    List<ItemGroupBean> itemGroups = igdao.findLegitGroupBySectionId(sectionId);
    if (!itemGroups.isEmpty()) {
        hasItemGroup = true;
    }
    // if the List of DisplayFormGroups is empty, then the servlet defers to
    // the prior method
    // of generating a DisplaySectionBean for the application
    DisplaySectionBean dsb;
    // want to get displayBean with grouped and ungrouped items
    request.setAttribute(EVENT_DEF_CRF_BEAN, edcb);
    request.setAttribute(INPUT_EVENT_CRF, ecb);
    request.setAttribute(SECTION_BEAN, sb);
    dsb = super.getDisplayBean(hasItemGroup, false, request, isSubmitted);
    FormDiscrepancyNotes discNotes = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
    if (discNotes == null) {
        discNotes = new FormDiscrepancyNotes();
        session.setAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME, discNotes);
    }
    /*
         * if (hasItemGroup) { //
         * dsb.setDisplayItemGroups(newDisplayBean.getDisplayItemGroups());
         * request.setAttribute("new_table", true); }
         */
    // If the Horizontal type table will be used, then set the
    // DisplaySectionBean's
    // DisplayFormGroups List to the ones we have just generated
    // @pgawade 30-May-2012 Fix for issue 13963 - added an extra parameter
    // 'isSubmitted' to method createItemWithGroups
    List<DisplayItemWithGroupBean> displayItemWithGroups = super.createItemWithGroups(dsb, hasItemGroup, eventDefinitionCRFId, request, isSubmitted);
    dsb.setDisplayItemGroups(displayItemWithGroups);
    super.populateNotesWithDBNoteCounts(discNotes, dsb, request);
    if (fp.getString("fromViewNotes") != null && "1".equals(fp.getString("fromViewNotes"))) {
        request.setAttribute("fromViewNotes", fp.getString("fromViewNotes"));
    } else {
        session.removeAttribute("viewNotesURL");
    }
    if ("saveNotes".equalsIgnoreCase(action)) {
        LOGGER.info("33333how many group rows:" + dsb.getDisplayItemGroups().size());
        // let's save notes for the blank items
        DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(getDataSource());
        discNotes = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
        for (int i = 0; i < dsb.getDisplayItemGroups().size(); i++) {
            DisplayItemWithGroupBean diwb = dsb.getDisplayItemGroups().get(i);
            if (diwb.isInGroup()) {
                List<DisplayItemGroupBean> dgbs = diwb.getItemGroups();
                LOGGER.info("dgbs size: " + dgbs.size());
                for (int j = 0; j < dgbs.size(); j++) {
                    DisplayItemGroupBean displayGroup = dgbs.get(j);
                    List<DisplayItemBean> items = displayGroup.getItems();
                    LOGGER.info("item size: " + items.size());
                    for (DisplayItemBean displayItem : items) {
                        String inputName = getGroupItemInputName(displayGroup, j, displayItem);
                        LOGGER.info("inputName:" + inputName);
                        LOGGER.info("item data id:" + displayItem.getData().getId());
                        AddNewSubjectServlet.saveFieldNotes(inputName, discNotes, dndao, displayItem.getData().getId(), "itemData", currentStudy);
                    }
                }
            } else {
                DisplayItemBean dib = diwb.getSingleItem();
                // TODO work on this line
                String inputName = getInputName(dib);
                AddNewSubjectServlet.saveFieldNotes(inputName, discNotes, dndao, dib.getData().getId(), DiscrepancyNoteBean.ITEM_DATA, currentStudy);
                ArrayList childItems = dib.getChildren();
                for (int j = 0; j < childItems.size(); j++) {
                    DisplayItemBean child = (DisplayItemBean) childItems.get(j);
                    inputName = getInputName(child);
                    AddNewSubjectServlet.saveFieldNotes(inputName, discNotes, dndao, dib.getData().getId(), DiscrepancyNoteBean.ITEM_DATA, currentStudy);
                }
            }
        }
        addPageMessage("Discrepancy notes are saved successfully.", request);
        request.setAttribute("id", studySubjectId + "");
        forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET, request, response);
        // "ViewStudySubject?id=" + studySubjectId));
        return;
    } else {
        request.setAttribute(BEAN_DISPLAY, dsb);
        request.setAttribute(BEAN_ANNOTATIONS, ecb.getAnnotations());
        request.setAttribute("sec", sb);
        request.setAttribute("EventCRFBean", ecb);
        int tabNum = 1;
        if ("".equalsIgnoreCase(fp.getString("tabId"))) {
            tabNum = 1;
        } else {
            tabNum = fp.getInt("tabId");
        }
        request.setAttribute("tabId", new Integer(tabNum).toString());
        // 2808: Signal interviewer.jsp that the containing page is
        // viewSectionData,
        // for the purpose of suppressing discrepancy note icons for the
        // interview date and name fields
        request.setAttribute(ENCLOSING_PAGE, "viewSectionData");
        if ("yes".equalsIgnoreCase(printVersion)) {
            forwardPage(Page.VIEW_SECTION_DATA_ENTRY_PRINT, request, response);
        } else {
            forwardPage(Page.VIEW_SECTION_DATA_ENTRY, request, response);
        }
    }
}

Example 48 with StudyEventDefinitionBean

use of org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean in project OpenClinica by OpenClinica.

the class ViewStudyEventsServlet method genEventsForPrint.

/**
     * Generates an arraylist of study events for printing
     *
     * @param fp
     * @param definitions
     * @param startDate
     * @param endDate
     * @param sedId
     * @param definitionId
     * @param statusId
     * @return
     */
private ArrayList genEventsForPrint(FormProcessor fp, ArrayList definitions, Date startDate, Date endDate, int sedId, int definitionId, int statusId) {
    StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
    ArrayList allEvents = new ArrayList();
    definitions = findDefinitionById(definitions, definitionId);
    // YW <<
    StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
    ArrayList studySubjects = ssdao.findAllByStudyId(currentStudy.getId());
    // YW >>
    for (int i = 0; i < definitions.size(); i++) {
        ViewEventDefinitionBean ved = new ViewEventDefinitionBean();
        StudyEventDefinitionBean sed = (StudyEventDefinitionBean) definitions.get(i);
        ved.setDefinition(sed);
        // YW <<
        ArrayList events = new ArrayList();
        for (int s = 0; s < studySubjects.size(); ++s) {
            StudySubjectBean ssb = (StudySubjectBean) studySubjects.get(s);
            ArrayList evts = sedao.findAllWithSubjectLabelByStudySubjectAndDefinition(ssb, sed.getId());
            for (int v = 0; v < evts.size(); ++v) {
                events.add(evts.get(v));
            }
        }
        // YW >>
        int subjectScheduled = 0;
        int subjectCompleted = 0;
        int subjectDiscontinued = 0;
        events = findEventByStatusAndDate(events, statusId, startDate, endDate);
        Date firstStartDateForScheduled = null;
        Date lastCompletionDate = null;
        // find the first firstStartDateForScheduled
        for (int k = 0; k < events.size(); k++) {
            StudyEventBean se = (StudyEventBean) events.get(k);
            if (se.getSubjectEventStatus().equals(SubjectEventStatus.SCHEDULED)) {
                firstStartDateForScheduled = se.getDateStarted();
                break;
            }
        }
        // find the first lastCompletionDate
        for (int k = 0; k < events.size(); k++) {
            StudyEventBean se = (StudyEventBean) events.get(k);
            if (se.getSubjectEventStatus().equals(SubjectEventStatus.COMPLETED)) {
                lastCompletionDate = se.getDateEnded();
                break;
            }
        }
        for (int j = 0; j < events.size(); j++) {
            StudyEventBean se = (StudyEventBean) events.get(j);
            if (se.getSubjectEventStatus().equals(SubjectEventStatus.SCHEDULED)) {
                subjectScheduled++;
                if (se.getDateStarted().before(new Date())) {
                    ArrayList eventCRFs = ecdao.findAllByStudyEvent(se);
                    if (eventCRFs.isEmpty()) {
                        se.setScheduledDatePast(true);
                    }
                }
                if (firstStartDateForScheduled == null) {
                    firstStartDateForScheduled = se.getDateStarted();
                } else if (se.getDateStarted().before(firstStartDateForScheduled)) {
                    firstStartDateForScheduled = se.getDateStarted();
                }
            } else if (se.getSubjectEventStatus().equals(SubjectEventStatus.COMPLETED)) {
                subjectCompleted++;
                if (lastCompletionDate == null) {
                    lastCompletionDate = se.getDateEnded();
                } else if (se.getDateEnded().after(lastCompletionDate)) {
                    lastCompletionDate = se.getDateEnded();
                }
            } else if (se.getSubjectEventStatus().getId() > 4) {
                // dropped out/stopped/skipped/relapse
                subjectDiscontinued++;
            }
        }
        ved.setSubjectCompleted(subjectCompleted);
        ved.setSubjectScheduled(subjectScheduled);
        ved.setSubjectDiscontinued(subjectDiscontinued);
        ved.setFirstScheduledStartDate(firstStartDateForScheduled);
        ved.setLastCompletionDate(lastCompletionDate);
        ved.setStudyEvents(events);
        if (!events.isEmpty()) {
            allEvents.add(ved);
        }
    }
    return allEvents;
}

Example 49 with StudyEventDefinitionBean

use of org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean in project OpenClinica by OpenClinica.

the class ViewStudyEventsServlet method genTables.

/**
     *
     * @param fp
     * @param definitions
     * @param startDate
     * @param endDate
     * @param sedId
     * @param definitionId
     * @param statusId
     * @return
     */
private ArrayList genTables(FormProcessor fp, ArrayList definitions, Date startDate, Date endDate, int sedId, int definitionId, int statusId) {
    StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
    ArrayList allEvents = new ArrayList();
    definitions = findDefinitionById(definitions, definitionId);
    // YW <<
    StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
    ArrayList studySubjects = ssdao.findAllByStudyId(currentStudy.getId());
    // YW >>
    for (int i = 0; i < definitions.size(); i++) {
        ViewEventDefinitionBean ved = new ViewEventDefinitionBean();
        StudyEventDefinitionBean sed = (StudyEventDefinitionBean) definitions.get(i);
        ved.setDefinition(sed);
        // YW <<
        ArrayList events = new ArrayList();
        for (int s = 0; s < studySubjects.size(); ++s) {
            StudySubjectBean ssb = (StudySubjectBean) studySubjects.get(s);
            ArrayList evts = sedao.findAllWithSubjectLabelByStudySubjectAndDefinition(ssb, sed.getId());
            for (int v = 0; v < evts.size(); ++v) {
                StudyEventBean seb = (StudyEventBean) evts.get(v);
                if (!(currentRole.isDirector() || currentRole.isCoordinator()) && seb.getSubjectEventStatus().isLocked()) {
                    seb.setEditable(false);
                }
                events.add(seb);
            }
        }
        int subjectScheduled = 0;
        int subjectCompleted = 0;
        int subjectDiscontinued = 0;
        events = findEventByStatusAndDate(events, statusId, startDate, endDate);
        Date firstStartDateForScheduled = null;
        Date lastCompletionDate = null;
        // find the first firstStartDateForScheduled
        for (int k = 0; k < events.size(); k++) {
            StudyEventBean se = (StudyEventBean) events.get(k);
            if (se.getSubjectEventStatus().equals(SubjectEventStatus.SCHEDULED)) {
                firstStartDateForScheduled = se.getDateStarted();
                break;
            }
        }
        // find the first lastCompletionDate
        for (int k = 0; k < events.size(); k++) {
            StudyEventBean se = (StudyEventBean) events.get(k);
            if (se.getSubjectEventStatus().equals(SubjectEventStatus.COMPLETED) && se.getDateEnded() != null) {
                lastCompletionDate = se.getDateEnded();
                break;
            }
        }
        for (int j = 0; j < events.size(); j++) {
            StudyEventBean se = (StudyEventBean) events.get(j);
            if (se.getSubjectEventStatus().equals(SubjectEventStatus.SCHEDULED)) {
                subjectScheduled++;
                if (se.getDateStarted().before(new Date())) {
                    ArrayList eventCRFs = ecdao.findAllByStudyEvent(se);
                    if (eventCRFs.isEmpty()) {
                        se.setScheduledDatePast(true);
                    }
                }
                if (firstStartDateForScheduled == null) {
                    firstStartDateForScheduled = se.getDateStarted();
                } else if (se.getDateStarted().before(firstStartDateForScheduled)) {
                    firstStartDateForScheduled = se.getDateStarted();
                }
            } else if (se.getSubjectEventStatus().equals(SubjectEventStatus.COMPLETED)) {
                subjectCompleted++;
                if (lastCompletionDate == null) {
                    lastCompletionDate = se.getDateEnded();
                } else if (se.getDateEnded() != null && se.getDateEnded().after(lastCompletionDate)) {
                    lastCompletionDate = se.getDateEnded();
                }
            } else if (se.getSubjectEventStatus().getId() > 4) {
                // dropped out/stopped/skipped/relapse
                subjectDiscontinued++;
            }
        }
        ved.setSubjectCompleted(subjectCompleted);
        ved.setSubjectScheduled(subjectScheduled);
        ved.setSubjectDiscontinued(subjectDiscontinued);
        ved.setFirstScheduledStartDate(firstStartDateForScheduled);
        ved.setLastCompletionDate(lastCompletionDate);
        EntityBeanTable table;
        if (sedId == sed.getId()) {
            // apply finding function or ordering
            // function
            // to a specific table
            table = fp.getEntityBeanTable();
        } else {
            table = new EntityBeanTable();
        }
        // sort by event
        table.setSortingIfNotExplicitlySet(1, false);
        // start date,
        // desc
        ArrayList allEventRows = StudyEventRow.generateRowsFromBeans(events);
        String[] columns = { resword.getString("study_subject_ID"), resword.getString("event_date_started"), resword.getString("subject_event_status"), resword.getString("actions") };
        table.setColumns(new ArrayList(Arrays.asList(columns)));
        table.hideColumnLink(3);
        HashMap args = new HashMap();
        args.put("sedId", new Integer(sed.getId()).toString());
        args.put("definitionId", new Integer(definitionId).toString());
        args.put("statusId", new Integer(statusId).toString());
        args.put("startDate", local_df.format(startDate));
        args.put("endDate", local_df.format(endDate));
        table.setQuery("ViewStudyEvents", args);
        table.setRows(allEventRows);
        table.computeDisplay();
        ved.setStudyEventTable(table);
        if (!events.isEmpty()) {
            allEvents.add(ved);
        }
    }
    //A. Hamid.
    return allEvents;
}

Example 50 with StudyEventDefinitionBean

use of org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean in project OpenClinica by OpenClinica.

the class DataEntryServlet method createEventCRF.

/**
     * Creates a new Event CRF or update the exsiting one, that is, an event CRF can be created but not item data yet, in this case, still consider it is not
     * started(called uncompleted before)
     * @param request TODO
     * @param fp TODO
     *
     * @return
     * @throws Exception
     */
private EventCRFBean createEventCRF(HttpServletRequest request, FormProcessor fp) throws InconsistentStateException {
    locale = LocaleResolver.getLocale(request);
    // < resmessage =
    // ResourceBundle.getBundle("org.akaza.openclinica.i18n.page_messages",
    // locale);
    // < restext =
    // ResourceBundle.getBundle("org.akaza.openclinica.i18n.notes",locale);
    // <
    // resexception=ResourceBundle.getBundle(
    // "org.akaza.openclinica.i18n.exceptions",locale);
    UserAccountBean ub = (UserAccountBean) request.getSession().getAttribute(USER_BEAN_NAME);
    StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
    EventCRFBean ecb;
    EventCRFDAO ecdao = new EventCRFDAO(getDataSource());
    int crfVersionId = fp.getInt(INPUT_CRF_VERSION_ID);
    LOGGER.trace("***FOUND*** crfversionid: " + crfVersionId);
    int studyEventId = fp.getInt(INPUT_STUDY_EVENT_ID);
    int eventDefinitionCRFId = fp.getInt(INPUT_EVENT_DEFINITION_CRF_ID);
    int subjectId = fp.getInt(INPUT_SUBJECT_ID);
    int eventCRFId = fp.getInt(INPUT_EVENT_CRF_ID);
    LOGGER.trace("look specifically wrt event crf id: " + eventCRFId);
    LOGGER.trace("Creating event CRF.  Study id: " + currentStudy.getId() + "; CRF Version id: " + crfVersionId + "; Study Event id: " + studyEventId + "; Event Definition CRF id: " + eventDefinitionCRFId + "; Subject: " + subjectId);
    StudySubjectDAO ssdao = new StudySubjectDAO(getDataSource());
    StudySubjectBean ssb = ssdao.findBySubjectIdAndStudy(subjectId, currentStudy);
    if (ssb.getId() <= 0) {
        LOGGER.trace("throwing ISE with study subject bean id of " + ssb.getId());
        // "begin_data_entry_without_event_but_subject"));
        throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("begin_data_entry_without_event_but_subject"));
    }
    StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(getDataSource());
    StudyEventDefinitionBean sedb = seddao.findByEventDefinitionCRFId(eventDefinitionCRFId);
    // logger.trace("study event definition:" + sedb.getId());
    if (sedb.getId() <= 0) {
        addPageMessage(resexception.getString("begin_data_entry_without_event_but_study"), request);
        throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("begin_data_entry_without_event_but_study"));
    }
    CRFVersionDAO cvdao = new CRFVersionDAO(getDataSource());
    EntityBean eb = cvdao.findByPK(crfVersionId);
    if (eb.getId() <= 0) {
        //addPageMessage(resexception.getString("begin_data_entry_without_event_but_CRF"));
        throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("begin_data_entry_without_event_but_CRF"));
    }
    StudyEventDAO sedao = new StudyEventDAO(getDataSource());
    StudyEventBean sEvent = (StudyEventBean) sedao.findByPK(studyEventId);
    StudyBean studyWithSED = currentStudy;
    if (currentStudy.getParentStudyId() > 0) {
        studyWithSED = new StudyBean();
        studyWithSED.setId(currentStudy.getParentStudyId());
    }
    AuditableEntityBean aeb = sedao.findByPKAndStudy(studyEventId, studyWithSED);
    if (aeb.getId() <= 0) {
        addPageMessage(resexception.getString("begin_data_entry_without_event_but_especified_event"), request);
        throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("begin_data_entry_without_event_but_especified_event"));
    }
    ecb = new EventCRFBean();
    if (eventCRFId == 0) {
        // no event CRF created yet
        ArrayList ecList = ecdao.findByEventSubjectVersion(sEvent, ssb, (CRFVersionBean) eb);
        if (ecList.size() > 0) {
            ecb = (EventCRFBean) ecList.get(0);
        } else {
            ecb.setAnnotations("");
            ecb.setCreatedDate(new Date());
            ecb.setCRFVersionId(crfVersionId);
            if (currentStudy.getStudyParameterConfig().getInterviewerNameDefault().equals("blank")) {
                ecb.setInterviewerName("");
            } else {
                // default will be event's owner name
                ecb.setInterviewerName(sEvent.getOwner().getName());
            }
            if (!currentStudy.getStudyParameterConfig().getInterviewDateDefault().equals("blank")) {
                if (sEvent.getDateStarted() != null) {
                    // default
                    ecb.setDateInterviewed(sEvent.getDateStarted());
                // date
                } else {
                    // logger.trace("evnet start date is null, so date
                    // interviewed is null");
                    ecb.setDateInterviewed(null);
                }
            } else {
                ecb.setDateInterviewed(null);
            // logger.trace("date interviewed is
            // null,getInterviewDateDefault() is blank");
            }
            // ecb.setOwnerId(ub.getId());
            // above depreciated, try without it, tbh
            ecb.setOwner(ub);
            ecb.setStatus(Status.AVAILABLE);
            ecb.setCompletionStatusId(1);
            ecb.setStudySubjectId(ssb.getId());
            ecb.setStudyEventId(studyEventId);
            ecb.setValidateString("");
            ecb.setValidatorAnnotations("");
            ecb = (EventCRFBean) ecdao.create(ecb);
            LOGGER.debug("*********CREATED EVENT CRF");
        }
    } else {
        // there is an event CRF already, only need to update
        ecb = (EventCRFBean) ecdao.findByPK(eventCRFId);
        ecb.setCRFVersionId(crfVersionId);
        ecb.setUpdatedDate(new Date());
        ecb.setUpdater(ub);
        ecb = updateECB(sEvent, request);
        ecb = (EventCRFBean) ecdao.update(ecb);
    }
    if (ecb.getId() <= 0) {
        addPageMessage(resexception.getString("new_event_CRF_not_created"), request);
        throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("new_event_CRF_not_created"));
    } else {
        if (sEvent.getSubjectEventStatus().equals(SubjectEventStatus.SIGNED)) {
            sEvent.setSubjectEventStatus(SubjectEventStatus.COMPLETED);
            sEvent.setUpdater(ub);
            sEvent.setUpdatedDate(new Date());
            sedao.update(sEvent);
        } else {
            sEvent.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED);
            sEvent.setUpdater(ub);
            sEvent.setUpdatedDate(new Date());
            sedao.update(sEvent);
        }
    }
    return ecb;
}