Examples with StudyGroupBean org.akaza.openclinica.bean.managestudy.StudyGroupBean used on opensource projects

Example 21 with StudyGroupBean

use of org.akaza.openclinica.bean.managestudy.StudyGroupBean in project OpenClinica by OpenClinica.

the class StudyGroupDAO method findByStudySubject.

/*
     * created for Extract Bean, we give the method a study subject bean and it
     * returns for us a hash map of class ids pointing to study group beans, tbh
     * July 2007
     */
public HashMap findByStudySubject(StudySubjectBean studySubject) {
    HashMap classBeanMap = new HashMap();
    HashMap variables = new HashMap();
    variables.put(new Integer(1), new Integer(studySubject.getId()));
    String sql = digester.getQuery("findByStudySubject");
    ArrayList alist = this.select(sql, variables);
    Iterator it = alist.iterator();
    if (it.hasNext()) {
        StudyGroupBean sgbean = (StudyGroupBean) this.getEntityFromHashMap((HashMap) it.next());
        classBeanMap.put(new Integer(sgbean.getStudyGroupClassId()), sgbean);
    }
    return classBeanMap;
}

Example 22 with StudyGroupBean

use of org.akaza.openclinica.bean.managestudy.StudyGroupBean in project OpenClinica by OpenClinica.

the class StudyGroupDAO method findSubjectGroupMaps.

public HashMap findSubjectGroupMaps(int studyId) {
    logger.info("testing with variable: " + studyId);
    HashMap subjectGroupMaps = new HashMap();
    ArrayList groupMaps = new ArrayList();
    HashMap subjectGroupMap = new HashMap();
    HashMap variables = new HashMap();
    this.setTypesExpected();
    this.setTypeExpected(5, TypeNames.INT);
    variables.put(new Integer(1), new Integer(studyId));
    String sql = digester.getQuery("findSubjectGroupMaps");
    // logger.info("*** "+sql);
    ArrayList alist = this.select(sql, variables);
    Iterator it = alist.iterator();
    while (it.hasNext()) {
        logger.info("iteration over answers...");
        subjectGroupMap = new HashMap();
        HashMap answers = (HashMap) it.next();
        Integer studySubjectId = (Integer) answers.get("study_subject_id");
        logger.info("iteration over answers..." + studySubjectId.intValue());
        if (subjectGroupMaps.containsKey(studySubjectId)) {
            groupMaps = (ArrayList) subjectGroupMaps.get(studySubjectId);
        // subjectGroupMap =
        // (HashMap)subjectGroupMaps.get(studySubjectId);
        } else {
            groupMaps = new ArrayList();
        }
        StudyGroupBean sgbean = (StudyGroupBean) this.getEntityFromHashMap(answers);
        subjectGroupMap.put(new Integer(sgbean.getStudyGroupClassId()), sgbean);
        groupMaps.add(subjectGroupMap);
        logger.info("subjectgroupmaps: just put in " + sgbean.getStudyGroupClassId());
        subjectGroupMaps.put(studySubjectId, groupMaps);
    }
    return subjectGroupMaps;
}

Example 23 with StudyGroupBean

use of org.akaza.openclinica.bean.managestudy.StudyGroupBean in project OpenClinica by OpenClinica.

the class CreateSubjectGroupClassServlet method submitGroup.

/**
 * Saves study group information into database
 *
 * @throws OpenClinicaException
 */
private void submitGroup() throws OpenClinicaException, IOException {
    StudyGroupClassBean group = (StudyGroupClassBean) session.getAttribute("group");
    ArrayList studyGroups = (ArrayList) session.getAttribute("studyGroups");
    StudyGroupClassDAO sgcdao = new StudyGroupClassDAO(sm.getDataSource());
    group.setStudyId(currentStudy.getId());
    group.setOwner(ub);
    group.setStatus(Status.AVAILABLE);
    group = (StudyGroupClassBean) sgcdao.create(group);
    if (!group.isActive()) {
        addPageMessage(respage.getString("the_subject_group_class_not_created_database"));
    } else {
        StudyGroupDAO sgdao = new StudyGroupDAO(sm.getDataSource());
        for (int i = 0; i < studyGroups.size(); i++) {
            StudyGroupBean sg = (StudyGroupBean) studyGroups.get(i);
            sg.setStudyGroupClassId(group.getId());
            sg.setOwner(ub);
            sg.setStatus(Status.AVAILABLE);
            sgdao.create(sg);
        }
        addPageMessage(respage.getString("the_subject_group_class_created_succesfully"));
    }
    ArrayList pageMessages = (ArrayList) request.getAttribute(PAGE_MESSAGE);
    session.setAttribute("pageMessages", pageMessages);
    response.sendRedirect(request.getContextPath() + Page.MANAGE_STUDY_MODULE.getFileName());
}

Example 24 with StudyGroupBean

use of org.akaza.openclinica.bean.managestudy.StudyGroupBean in project OpenClinica by OpenClinica.

the class UpdateSubjectGroupClassServlet method submitGroup.

private void submitGroup() throws OpenClinicaException {
    StudyGroupClassBean group = (StudyGroupClassBean) session.getAttribute("group");
    ArrayList studyGroups = (ArrayList) session.getAttribute("studyGroups");
    ArrayList newStudyGroups = (ArrayList) session.getAttribute("newStudyGroups");
    StudyGroupClassDAO sgcdao = new StudyGroupClassDAO(sm.getDataSource());
    group.setUpdater(ub);
    group.setUpdatedDate(new Date());
    group = (StudyGroupClassBean) sgcdao.update(group);
    if (!group.isActive()) {
        addPageMessage(respage.getString("the_subject_group_class_no_updated_database"));
    } else {
        StudyGroupDAO sgdao = new StudyGroupDAO(sm.getDataSource());
        for (int i = 0; i < studyGroups.size(); i++) {
            StudyGroupBean sg = (StudyGroupBean) studyGroups.get(i);
            sg.setStudyGroupClassId(group.getId());
            if (sg.getId() == 0) {
                sg.setOwner(ub);
                sg.setStatus(Status.AVAILABLE);
                sgdao.create(sg);
            } else {
                sg.setUpdater(ub);
                sg.setStatus(Status.AVAILABLE);
                sgdao.update(sg);
            }
        }
        addPageMessage(respage.getString("the_subject_group_class_updated_succesfully"));
    }
    forwardPage(Page.SUBJECT_GROUP_CLASS_LIST_SERVLET);
}

Example 25 with StudyGroupBean

use of org.akaza.openclinica.bean.managestudy.StudyGroupBean in project OpenClinica by OpenClinica.

the class UpdateStudySubjectServlet method confirm.

/**
 * Processes 'confirm' request, validate the study subject object
 *
 * @param sub
 * @throws Exception
 */
private void confirm(StudyGroupDAO sgdao) throws Exception {
    ArrayList classes = (ArrayList) session.getAttribute("groups");
    StudySubjectBean sub = (StudySubjectBean) session.getAttribute("studySub");
    FormDiscrepancyNotes discNotes = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
    DiscrepancyValidator v = new DiscrepancyValidator(request, discNotes);
    FormProcessor fp = new FormProcessor(request);
    java.util.Date enrollDate = sub.getEnrollmentDate();
    if (ub.isSysAdmin() || currentRole.isManageStudy() || currentRole.isInvestigator() || currentStudy.getParentStudyId() > 0 && currentRole.isResearchAssistant() || currentStudy.getParentStudyId() > 0 && currentRole.isResearchAssistant2()) {
        // currentRole.getRoleName().equals(Role.STUDYDIRECTOR) || currentRole.getRoleName().equals(Role.COORDINATOR)) {
        v.addValidation("label", Validator.NO_BLANKS);
        v.addValidation("label", Validator.DOES_NOT_CONTAIN_HTML_LESSTHAN_GREATERTHAN_ELEMENTS);
        v.addValidation("secondaryLabel", Validator.DOES_NOT_CONTAIN_HTML_LESSTHAN_GREATERTHAN_ELEMENTS);
        String eDateString = fp.getString("enrollmentDate");
        if (!StringUtil.isBlank(eDateString)) {
            v.addValidation("enrollmentDate", Validator.IS_A_DATE);
            v.alwaysExecuteLastValidation("enrollmentDate");
        }
        errors = v.validate();
        if (!StringUtil.isBlank(fp.getString("label"))) {
            StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
            StudySubjectBean sub1 = (StudySubjectBean) ssdao.findAnotherBySameLabel(fp.getString("label").trim(), currentStudy.getId(), sub.getId());
            // JRWS>> Also look for labels in the child studies
            if (sub1.getId() == 0) {
                sub1 = (StudySubjectBean) ssdao.findAnotherBySameLabelInSites(fp.getString("label").trim(), currentStudy.getId(), sub.getId());
            }
            if (sub1.getId() > 0) {
                Validator.addError(errors, "label", resexception.getString("subject_ID_used_by_another_choose_unique"));
            }
        }
        sub.setLabel(fp.getString("label"));
        sub.setSecondaryLabel(fp.getString("secondaryLabel"));
        try {
            local_df.setLenient(false);
            if (!StringUtil.isBlank(eDateString)) {
                enrollDate = local_df.parse(eDateString);
            } else {
                enrollDate = null;
            }
        } catch (ParseException fe) {
            logger.warn("Enrollment Date cannot be parsed.");
        }
        sub.setEnrollmentDate(enrollDate);
    }
    // below added tbh 092007, fix for YY vs YYYY formatting
    String enrollDateStr = enrollDate != null ? local_df.format(enrollDate) : "";
    session.setAttribute("enrollDateStr", enrollDateStr);
    // above added tbh 092007
    session.setAttribute("studySub", sub);
    if (!classes.isEmpty()) {
        for (int i = 0; i < classes.size(); i++) {
            StudyGroupClassBean sgc = (StudyGroupClassBean) classes.get(i);
            int groupId = fp.getInt("studyGroupId" + i);
            String notes = fp.getString("notes" + i);
            v.addValidation("notes" + i, Validator.LENGTH_NUMERIC_COMPARISON, NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO, 255);
            sgc.setStudyGroupId(groupId);
            sgc.setGroupNotes(notes);
            if (groupId > 0) {
                StudyGroupBean sgb = (StudyGroupBean) sgdao.findByPK(groupId);
                sgc.setStudyGroupName(sgb.getName());
            }
        }
    }
    session.setAttribute("groups", classes);
    if (!errors.isEmpty()) {
        logger.info("has errors");
        if (StringUtil.isBlank(sub.getLabel())) {
            addPageMessage(respage.getString("must_enter_subject_ID_for_identifying") + respage.getString("this_may_be_external_ID_number") + respage.getString("you_may_enter_study_subject_ID_listed") + respage.getString("study_subject_ID_should_not_contain_protected_information"));
        } else {
            StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
            StudySubjectBean sub1 = (StudySubjectBean) subdao.findAnotherBySameLabel(sub.getLabel(), sub.getStudyId(), sub.getId());
            if (sub1.getId() > 0) {
                addPageMessage(resexception.getString("subject_ID_used_by_another_choose_unique"));
            }
        }
        request.setAttribute("formMessages", errors);
        forwardPage(Page.UPDATE_STUDY_SUBJECT);
    } else {
        forwardPage(Page.UPDATE_STUDY_SUBJECT_CONFIRM);
    }
}