Examples with StudyGroupClassBean org.akaza.openclinica.bean.managestudy.StudyGroupClassBean used on opensource projects

Example 11 with StudyGroupClassBean

use of org.akaza.openclinica.bean.managestudy.StudyGroupClassBean in project OpenClinica by OpenClinica.

the class RulesPostImportContainerService method isRuleActionValid.

private void isRuleActionValid(RuleActionBean ruleActionBean, AuditableBeanWrapper<RuleSetBean> ruleSetBeanWrapper, EventDefinitionCRFBean eventDefinitionCRFBean, List<RuleSetBean> eventActionsRuleSetBean) {
    RuleActionRunBean ruleActionRun = ruleActionBean.getRuleActionRun();
    if (ruleActionBean.getActionType().getCode() != 6 && !ruleActionRun.getInitialDataEntry() && !ruleActionRun.getAdministrativeDataEntry() && !ruleActionRun.getBatch() && !ruleActionRun.getDoubleDataEntry() && !ruleActionRun.getImportDataEntry())
        ruleSetBeanWrapper.error(createError("OCRERR_0050"));
    String message = "";
    String emailSubject = "";
    if (ruleActionBean instanceof org.akaza.openclinica.domain.rule.action.NotificationActionBean) {
        message = ((NotificationActionBean) ruleActionBean).getMessage();
        emailSubject = ((NotificationActionBean) ruleActionBean).getSubject();
        if (emailSubject.length() > 330)
            ruleSetBeanWrapper.error(createError("OCRERR_0048"));
        if (message.length() > 2040)
            ruleSetBeanWrapper.error(createError("OCRERR_0049"));
    }
    if (ruleActionBean instanceof org.akaza.openclinica.domain.rule.action.EmailActionBean)
        isUploadedRuleSupportedForEventAction(ruleSetBeanWrapper);
    if (ruleActionBean instanceof DiscrepancyNoteActionBean)
        isUploadedRuleSupportedForEventAction(ruleSetBeanWrapper);
    if (ruleActionBean instanceof ShowActionBean) {
        if (!isUploadedRuleSupportedForEventAction(ruleSetBeanWrapper)) {
            List<PropertyBean> properties = ((ShowActionBean) ruleActionBean).getProperties();
            //if (ruleActionBean.getRuleActionRun().getBatch() == true || ruleActionBean.getRuleActionRun().getImportDataEntry() == true) {
            if (ruleActionBean.getRuleActionRun().getBatch() == true) {
                ruleSetBeanWrapper.error("ShowAction " + ((ShowActionBean) ruleActionBean).toString() + " is not Valid. You cannot have Batch=\"true\". ");
            //+ " is not Valid. You cannot have ImportDataEntry=\"true\" Batch=\"true\". ");
            }
            for (PropertyBean propertyBean : properties) {
                String result = getExpressionService().checkValidityOfItemOrItemGroupOidInCrf(propertyBean.getOid(), ruleSetBeanWrapper.getAuditableBean());
                // String result = getExpressionService().isExpressionValid(oid, ruleSetBeanWrapper.getAuditableBean(), 2) ? "OK" : "";
                if (!result.equals("OK")) {
                    ruleSetBeanWrapper.error("ShowAction OID " + result + " is not Valid. ");
                }
            }
        }
    }
    if (ruleActionBean instanceof HideActionBean) {
        if (!isUploadedRuleSupportedForEventAction(ruleSetBeanWrapper)) {
            List<PropertyBean> properties = ((HideActionBean) ruleActionBean).getProperties();
            //if (ruleActionBean.getRuleActionRun().getBatch() == true || ruleActionBean.getRuleActionRun().getImportDataEntry() == true) {
            if (ruleActionBean.getRuleActionRun().getBatch() == true) {
                ruleSetBeanWrapper.error("HideAction " + ((HideActionBean) ruleActionBean).toString() + " is not Valid. You cannot have Batch=\"true\". ");
            //+ " is not Valid. You cannot have ImportDataEntry=\"true\" Batch=\"true\". ");
            }
            for (PropertyBean propertyBean : properties) {
                String result = getExpressionService().checkValidityOfItemOrItemGroupOidInCrf(propertyBean.getOid(), ruleSetBeanWrapper.getAuditableBean());
                // String result = getExpressionService().isExpressionValid(oid, ruleSetBeanWrapper.getAuditableBean(), 2) ? "OK" : "";
                if (!result.equals("OK")) {
                    ruleSetBeanWrapper.error("HideAction OID " + result + " is not Valid. ");
                }
            }
        }
    }
    if (ruleActionBean instanceof InsertActionBean) {
        if (!isUploadedRuleSupportedForEventAction(ruleSetBeanWrapper)) {
            DataBinder dataBinder = new DataBinder(ruleActionBean);
            Errors errors = dataBinder.getBindingResult();
            InsertActionValidator insertActionValidator = getInsertActionValidator();
            insertActionValidator.setEventDefinitionCRFBean(eventDefinitionCRFBean);
            insertActionValidator.setRuleSetBean(ruleSetBeanWrapper.getAuditableBean());
            insertActionValidator.setExpressionService(expressionService);
            insertActionValidator.validate(ruleActionBean, errors);
            if (errors.hasErrors()) {
                ruleSetBeanWrapper.error("InsertAction is not valid: " + errors.getAllErrors().get(0).getCode());
            }
        }
    }
    if (ruleActionBean instanceof RandomizeActionBean) {
        if (!isUploadedRuleSupportedForEventAction(ruleSetBeanWrapper)) {
            DataBinder dataBinder = new DataBinder(ruleActionBean);
            Errors errors = dataBinder.getBindingResult();
            RandomizeActionValidator randomizeActionValidator = getRandomizeActionValidator();
            randomizeActionValidator.setEventDefinitionCRFBean(eventDefinitionCRFBean);
            randomizeActionValidator.setRuleSetBean(ruleSetBeanWrapper.getAuditableBean());
            randomizeActionValidator.setExpressionService(expressionService);
            randomizeActionValidator.validate(ruleActionBean, errors);
            RandomizeActionBean randomizeActionBean = (RandomizeActionBean) ruleActionBean;
            //        ruleSetBeanWrapper.error(createError("OCRERR_0050"));
            if (randomizeActionBean.getStratificationFactors() != null) {
                for (StratificationFactorBean factor : randomizeActionBean.getStratificationFactors()) {
                    if (factor.getStratificationFactor() != null && factor.getStratificationFactor().getValue() != null && factor.getStratificationFactor().getValue().length() != 0) {
                        String expressionContextName = factor.getStratificationFactor().getContextName();
                        Context context = expressionContextName != null ? Context.getByName(expressionContextName) : Context.OC_RULES_V1;
                        factor.getStratificationFactor().setContext(context);
                        ExpressionBean expBean = factor.getStratificationFactor();
                        String expValue = expBean.getValue();
                        String prefix = "STUDYGROUPCLASSLIST";
                        boolean sgcExist = false;
                        if (expValue.startsWith("SS.")) {
                            String param = expValue.split("\\.", -1)[1].trim();
                            if (param.startsWith(prefix)) {
                                String gcName = param.substring(21, param.indexOf("\"]"));
                                StudyGroupClassDAO studyGroupClassDAO = new StudyGroupClassDAO(ds);
                                ArrayList<StudyGroupClassBean> studyGroupClasses = studyGroupClassDAO.findAllByStudy(currentStudy);
                                for (StudyGroupClassBean studyGroupClass : studyGroupClasses) {
                                    if (studyGroupClass.getName().equalsIgnoreCase(gcName.trim())) {
                                        sgcExist = true;
                                        break;
                                    }
                                }
                            }
                            if (!param.equalsIgnoreCase("BIRTHDATE") && !param.equalsIgnoreCase("SEX") && !sgcExist) {
                                ruleSetBeanWrapper.error(createError("OCRERR_0051", expBean.getValue()));
                            }
                        } else {
                            isStratificationExpressionValid(expBean, ruleSetBeanWrapper);
                        }
                    }
                }
            }
            if (errors.hasErrors())
                ruleSetBeanWrapper.error("Randomize Action is not valid: " + errors.getAllErrors().get(0).getCode());
        }
    }
    if (ruleActionBean instanceof EventActionBean) {
        DataBinder dataBinder = new DataBinder(ruleActionBean);
        Errors errors = dataBinder.getBindingResult();
        eventActionValidator.setRuleSetBeanWrapper(ruleSetBeanWrapper);
        eventActionValidator.setExpressionService(expressionService);
        eventActionValidator.setRespage(respage);
        eventActionValidator.validate(ruleActionBean, errors);
        String currentTarget = null;
        currentTarget = ruleSetBeanWrapper.getAuditableBean().getOriginalTarget().getValue();
        if (currentTarget.contains(".STARTDATE") || currentTarget.contains(".STATUS")) {
            if (ruleActionBean.getActionType().getCode() == 6)
                //Validation , move to Validate Rule page under eventActinValidator
                inValidateInfiniteLoop(ruleActionBean, ruleSetBeanWrapper, eventActionsRuleSetBean);
        } else {
            ruleSetBeanWrapper.error(createError("OCRERR_0044"));
        }
        if (errors.hasErrors()) {
            ruleSetBeanWrapper.error("EventAction is not valid: " + errors.getAllErrors().get(0).getDefaultMessage());
        }
    }
}

Example 12 with StudyGroupClassBean

use of org.akaza.openclinica.bean.managestudy.StudyGroupClassBean in project OpenClinica by OpenClinica.

the class RemoveStudyServlet method processRequest.

@Override
public void processRequest() throws Exception {
    StudyDAO sdao = new StudyDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    int studyId = fp.getInt("id");
    StudyBean study = (StudyBean) sdao.findByPK(studyId);
    // find all sites
    ArrayList sites = (ArrayList) sdao.findAllByParent(studyId);
    // find all user and roles in the study, include ones in sites
    UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
    ArrayList userRoles = udao.findAllByStudyId(studyId);
    // find all subjects in the study, include ones in sites
    StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
    ArrayList subjects = ssdao.findAllByStudy(study);
    // find all events in the study, include ones in sites
    StudyEventDefinitionDAO sefdao = new StudyEventDefinitionDAO(sm.getDataSource());
    ArrayList definitions = sefdao.findAllByStudy(study);
    String action = request.getParameter("action");
    if (studyId == 0) {
        addPageMessage(respage.getString("please_choose_a_study_to_remove"));
        forwardPage(Page.STUDY_LIST_SERVLET);
    } else {
        if ("confirm".equalsIgnoreCase(action)) {
            request.setAttribute("studyToRemove", study);
            request.setAttribute("sitesToRemove", sites);
            request.setAttribute("userRolesToRemove", userRoles);
            request.setAttribute("subjectsToRemove", subjects);
            request.setAttribute("definitionsToRemove", definitions);
            forwardPage(Page.REMOVE_STUDY);
        } else {
            logger.info("submit to remove the study");
            // change all statuses to unavailable
            StudyDAO studao = new StudyDAO(sm.getDataSource());
            study.setOldStatus(study.getStatus());
            study.setStatus(Status.DELETED);
            study.setUpdater(ub);
            study.setUpdatedDate(new Date());
            studao.update(study);
            // remove all sites
            for (int i = 0; i < sites.size(); i++) {
                StudyBean site = (StudyBean) sites.get(i);
                if (!site.getStatus().equals(Status.DELETED)) {
                    site.setOldStatus(site.getStatus());
                    site.setStatus(Status.AUTO_DELETED);
                    site.setUpdater(ub);
                    site.setUpdatedDate(new Date());
                    sdao.update(site);
                }
            }
            // remove all users and roles
            for (int i = 0; i < userRoles.size(); i++) {
                StudyUserRoleBean role = (StudyUserRoleBean) userRoles.get(i);
                logger.info("remove user role" + role.getName());
                if (!role.getStatus().equals(Status.DELETED)) {
                    role.setStatus(Status.AUTO_DELETED);
                    role.setUpdater(ub);
                    role.setUpdatedDate(new Date());
                    udao.updateStudyUserRole(role, role.getUserName());
                }
            }
            // YW << bug fix for that current active study has been deleted
            if (study.getId() == currentStudy.getId()) {
                currentStudy.setStatus(Status.DELETED);
                currentRole.setStatus(Status.DELETED);
            } else // (auto-removed)
            if (currentStudy.getParentStudyId() == study.getId()) {
                currentStudy.setStatus(Status.AUTO_DELETED);
                // we may need handle this later?
                currentRole.setStatus(Status.DELETED);
            }
            // remove all subjects
            for (int i = 0; i < subjects.size(); i++) {
                StudySubjectBean subject = (StudySubjectBean) subjects.get(i);
                if (!subject.getStatus().equals(Status.DELETED)) {
                    subject.setStatus(Status.AUTO_DELETED);
                    subject.setUpdater(ub);
                    subject.setUpdatedDate(new Date());
                    ssdao.update(subject);
                }
            }
            // remove all study_group_class
            // changed by jxu on 08-31-06, to fix the problem of no study_id
            // in study_group table
            StudyGroupClassDAO sgcdao = new StudyGroupClassDAO(sm.getDataSource());
            StudyGroupDAO sgdao = new StudyGroupDAO(sm.getDataSource());
            SubjectGroupMapDAO sgmdao = new SubjectGroupMapDAO(sm.getDataSource());
            // YW 09-27-2007, enable status updating for StudyGroupClassBean
            ArrayList groups = sgcdao.findAllByStudy(study);
            for (int i = 0; i < groups.size(); i++) {
                StudyGroupClassBean group = (StudyGroupClassBean) groups.get(i);
                if (!group.getStatus().equals(Status.DELETED)) {
                    group.setStatus(Status.AUTO_DELETED);
                    group.setUpdater(ub);
                    group.setUpdatedDate(new Date());
                    sgcdao.update(group);
                    // all subject_group_map
                    ArrayList subjectGroupMaps = sgmdao.findAllByStudyGroupClassId(group.getId());
                    for (int j = 0; j < subjectGroupMaps.size(); j++) {
                        SubjectGroupMapBean sgMap = (SubjectGroupMapBean) subjectGroupMaps.get(j);
                        if (!sgMap.getStatus().equals(Status.DELETED)) {
                            sgMap.setStatus(Status.AUTO_DELETED);
                            sgMap.setUpdater(ub);
                            sgMap.setUpdatedDate(new Date());
                            sgmdao.update(sgMap);
                        }
                    }
                }
            }
            ArrayList groupClasses = sgcdao.findAllActiveByStudy(study);
            for (int i = 0; i < groupClasses.size(); i++) {
                StudyGroupClassBean gc = (StudyGroupClassBean) groupClasses.get(i);
                if (!gc.getStatus().equals(Status.DELETED)) {
                    gc.setStatus(Status.AUTO_DELETED);
                    gc.setUpdater(ub);
                    gc.setUpdatedDate(new Date());
                    sgcdao.update(gc);
                }
            }
            // remove all event definitions and event
            EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
            StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
            for (int i = 0; i < definitions.size(); i++) {
                StudyEventDefinitionBean definition = (StudyEventDefinitionBean) definitions.get(i);
                if (!definition.getStatus().equals(Status.DELETED)) {
                    definition.setStatus(Status.AUTO_DELETED);
                    definition.setUpdater(ub);
                    definition.setUpdatedDate(new Date());
                    sefdao.update(definition);
                    ArrayList edcs = (ArrayList) edcdao.findAllByDefinition(definition.getId());
                    for (int j = 0; j < edcs.size(); j++) {
                        EventDefinitionCRFBean edc = (EventDefinitionCRFBean) edcs.get(j);
                        if (!edc.getStatus().equals(Status.DELETED)) {
                            edc.setStatus(Status.AUTO_DELETED);
                            edc.setUpdater(ub);
                            edc.setUpdatedDate(new Date());
                            edcdao.update(edc);
                        }
                    }
                    ArrayList events = (ArrayList) sedao.findAllByDefinition(definition.getId());
                    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
                    for (int j = 0; j < events.size(); j++) {
                        StudyEventBean event = (StudyEventBean) events.get(j);
                        if (!event.getStatus().equals(Status.DELETED)) {
                            event.setStatus(Status.AUTO_DELETED);
                            event.setUpdater(ub);
                            event.setUpdatedDate(new Date());
                            sedao.update(event);
                            ArrayList eventCRFs = ecdao.findAllByStudyEvent(event);
                            ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
                            for (int k = 0; k < eventCRFs.size(); k++) {
                                EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(k);
                                if (!eventCRF.getStatus().equals(Status.DELETED)) {
                                    eventCRF.setOldStatus(eventCRF.getStatus());
                                    eventCRF.setStatus(Status.AUTO_DELETED);
                                    eventCRF.setUpdater(ub);
                                    eventCRF.setUpdatedDate(new Date());
                                    ecdao.update(eventCRF);
                                    ArrayList itemDatas = iddao.findAllByEventCRFId(eventCRF.getId());
                                    for (int a = 0; a < itemDatas.size(); a++) {
                                        ItemDataBean item = (ItemDataBean) itemDatas.get(a);
                                        if (!item.getStatus().equals(Status.DELETED)) {
                                            item.setOldStatus(item.getStatus());
                                            item.setStatus(Status.AUTO_DELETED);
                                            item.setUpdater(ub);
                                            item.setUpdatedDate(new Date());
                                            iddao.update(item);
                                        }
                                    }
                                }
                            }
                        }
                    }
                }
            }
            // for definitions
            DatasetDAO datadao = new DatasetDAO(sm.getDataSource());
            ArrayList dataset = datadao.findAllByStudyId(study.getId());
            for (int i = 0; i < dataset.size(); i++) {
                DatasetBean data = (DatasetBean) dataset.get(i);
                if (!data.getStatus().equals(Status.DELETED)) {
                    data.setStatus(Status.AUTO_DELETED);
                    data.setUpdater(ub);
                    data.setUpdatedDate(new Date());
                    datadao.update(data);
                }
            }
            addPageMessage(resexception.getString("this_study_has_been_removed_succesfully"));
            forwardPage(Page.STUDY_LIST_SERVLET);
        }
    }
}

Example 13 with StudyGroupClassBean

use of org.akaza.openclinica.bean.managestudy.StudyGroupClassBean in project OpenClinica by OpenClinica.

the class SecureController method getStudyGroupClassesByCurrentStudy.

public ArrayList getStudyGroupClassesByCurrentStudy() {
    StudyDAO studyDAO = new StudyDAO(sm.getDataSource());
    StudyGroupClassDAO studyGroupClassDAO = new StudyGroupClassDAO(sm.getDataSource());
    StudyGroupDAO studyGroupDAO = new StudyGroupDAO(sm.getDataSource());
    int parentStudyId = currentStudy.getParentStudyId();
    ArrayList studyGroupClasses = new ArrayList();
    if (parentStudyId > 0) {
        StudyBean parentStudy = (StudyBean) studyDAO.findByPK(parentStudyId);
        studyGroupClasses = studyGroupClassDAO.findAllActiveByStudy(parentStudy);
    } else {
        parentStudyId = currentStudy.getId();
        studyGroupClasses = studyGroupClassDAO.findAllActiveByStudy(currentStudy);
    }
    for (int i = 0; i < studyGroupClasses.size(); i++) {
        StudyGroupClassBean sgc = (StudyGroupClassBean) studyGroupClasses.get(i);
        ArrayList groups = studyGroupDAO.findAllByGroupClass(sgc);
        sgc.setStudyGroups(groups);
    }
    return studyGroupClasses;
}

Example 14 with StudyGroupClassBean

use of org.akaza.openclinica.bean.managestudy.StudyGroupClassBean in project OpenClinica by OpenClinica.

the class EditDatasetServlet method initializeAttributes.

/**
     * Initialize data of a DatasetBean and set session attributes for displaying selected data of this DatasetBean
     *
     * @param db
     * @return
     *
     */
// @author ywang (Feb, 2008)
public DatasetBean initializeAttributes(int datasetId) {
    DatasetDAO dsdao = new DatasetDAO(sm.getDataSource());
    DatasetBean db = dsdao.initialDatasetData(datasetId);
    session.setAttribute("newDataset", db);
    session.setAttribute("allItems", db.getItemDefCrf().clone());
    session.setAttribute("allSelectedItems", db.getItemDefCrf().clone());
    StudyGroupClassDAO sgcdao = new StudyGroupClassDAO(sm.getDataSource());
    StudyDAO studydao = new StudyDAO(sm.getDataSource());
    StudyBean theStudy = (StudyBean) studydao.findByPK(sm.getUserBean().getActiveStudyId());
    ArrayList<StudyGroupClassBean> allSelectedGroups = sgcdao.findAllActiveByStudy(theStudy);
    ArrayList<Integer> selectedSubjectGroupIds = db.getSubjectGroupIds();
    if (selectedSubjectGroupIds != null && allSelectedGroups != null) {
        for (Integer id : selectedSubjectGroupIds) {
            for (int i = 0; i < allSelectedGroups.size(); ++i) {
                if (allSelectedGroups.get(i).getId() == id) {
                    allSelectedGroups.get(i).setSelected(true);
                    break;
                }
            }
        }
    }
    session.setAttribute("allSelectedGroups", allSelectedGroups);
    return db;
}

Example 15 with StudyGroupClassBean

use of org.akaza.openclinica.bean.managestudy.StudyGroupClassBean in project OpenClinica by OpenClinica.

the class ViewDatasetsServlet method initializeAttributes.

/**
     * Initialize data of a DatasetBean and set session attributes for
     * displaying selected data of this DatasetBean
     *
     * @param db
     * @return
     *
     */
// @author ywang (Feb, 2008)
public DatasetBean initializeAttributes(int datasetId) {
    DatasetDAO dsdao = new DatasetDAO(sm.getDataSource());
    DatasetBean db = dsdao.initialDatasetData(datasetId);
    session.setAttribute("newDataset", db);
    session.setAttribute("allItems", db.getItemDefCrf().clone());
    session.setAttribute("allSelectedItems", db.getItemDefCrf().clone());
    StudyGroupClassDAO sgcdao = new StudyGroupClassDAO(sm.getDataSource());
    StudyDAO studydao = new StudyDAO(sm.getDataSource());
    StudyBean theStudy = (StudyBean) studydao.findByPK(sm.getUserBean().getActiveStudyId());
    ArrayList<StudyGroupClassBean> allSelectedGroups = sgcdao.findAllActiveByStudy(theStudy);
    ArrayList<Integer> selectedSubjectGroupIds = db.getSubjectGroupIds();
    if (selectedSubjectGroupIds != null && allSelectedGroups != null) {
        for (Integer id : selectedSubjectGroupIds) {
            for (int i = 0; i < allSelectedGroups.size(); ++i) {
                if (allSelectedGroups.get(i).getId() == id) {
                    allSelectedGroups.get(i).setSelected(true);
                    break;
                }
            }
        }
    }
    session.setAttribute("allSelectedGroups", allSelectedGroups);
    return db;
}