Examples with StudySubjectBean org.akaza.openclinica.bean.managestudy.StudySubjectBean used on opensource projects

Example 36 with StudySubjectBean

use of org.akaza.openclinica.bean.managestudy.StudySubjectBean in project OpenClinica by OpenClinica.

the class RuleSetService method filterRuleSetsByStudySubject.

/*
     * (non-Javadoc)
     * @see org.akaza.openclinica.service.rule.RuleSetServiceInterface#filterRuleSetsByStudyEventOrdinal(java.util.List)
     */
@SuppressWarnings("unchecked")
public List<RuleSetBean> filterRuleSetsByStudySubject(List<RuleSetBean> ruleSets) throws NumberFormatException, ParseException {
    for (RuleSetBean ruleSet : ruleSets) {
        List<ExpressionBean> filteredExpressions = new ArrayList<ExpressionBean>();
        if (ruleSet.getExpressions() != null) {
            for (ExpressionBean expression : ruleSet.getExpressions()) {
                String studyEventId = getExpressionService().getStudyEventDefinitionOrdninalCurated(expression.getValue());
                StudyEventBean studyEvent = (StudyEventBean) getStudyEventDao().findByPK(Integer.valueOf(studyEventId));
                StudySubjectBean studySubject = (StudySubjectBean) getStudySubjecdao().findByPK(studyEvent.getStudySubjectId());
                if (doTriggerRule(ruleSet, studySubject)) {
                    ExpressionBean expBean = new ExpressionBean();
                    expBean.setValue(expression.getValue());
                    expBean.setContext(expression.getContext());
                    filteredExpressions.add(expBean);
                }
            }
            ruleSet.setExpressions(filteredExpressions);
        } else {
            ruleSet.setExpressions(filteredExpressions);
        }
    }
    logExpressions(ruleSets);
    return ruleSets;
}

Example 37 with StudySubjectBean

use of org.akaza.openclinica.bean.managestudy.StudySubjectBean in project OpenClinica by OpenClinica.

the class SubjectService method createSubject.

/*
     * (non-Javadoc)
     * @see org.akaza.openclinica.service.subject.SubjectServiceInterface#createSubject(org.akaza.openclinica.bean.submit.SubjectBean,
     * org.akaza.openclinica.bean.managestudy.StudyBean)
     */
public String createSubject(SubjectBean subjectBean, StudyBean studyBean, Date enrollmentDate, String secondaryId) {
    if (subjectBean.getUniqueIdentifier() != null && subjectBean.getUniqueIdentifier().trim().length() > 0 && getSubjectDao().findByUniqueIdentifier(subjectBean.getUniqueIdentifier()).getId() != 0) {
        //we need to keep the label to transfer it to the StudySubjectBean later
        String label = subjectBean.getLabel();
        subjectBean = getSubjectDao().findByUniqueIdentifier(subjectBean.getUniqueIdentifier());
        subjectBean.setLabel(label);
    } else {
        subjectBean.setStatus(Status.AVAILABLE);
        subjectBean = getSubjectDao().create(subjectBean);
    }
    StudySubjectBean studySubject = createStudySubject(subjectBean, studyBean, enrollmentDate, secondaryId);
    getStudySubjectDao().createWithoutGroup(studySubject);
    return studySubject.getLabel();
}

Example 38 with StudySubjectBean

use of org.akaza.openclinica.bean.managestudy.StudySubjectBean in project OpenClinica by OpenClinica.

the class DeleteEventCRFServlet method processRequest.

@Override
public void processRequest() throws Exception {
    FormProcessor fp = new FormProcessor(request);
    int studySubId = fp.getInt(STUDY_SUB_ID, true);
    int eventCRFId = fp.getInt(EVENT_CRF_ID);
    String action = request.getParameter("action");
    StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
    StudyDAO sdao = new StudyDAO(sm.getDataSource());
    if (eventCRFId == 0) {
        addPageMessage(respage.getString("please_choose_an_event_CRF_to_delete"));
        request.setAttribute("id", new Integer(studySubId).toString());
        forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET);
    } else {
        EventCRFBean eventCRF = (EventCRFBean) ecdao.findByPK(eventCRFId);
        StudySubjectBean studySub = (StudySubjectBean) subdao.findByPK(studySubId);
        request.setAttribute("studySub", studySub);
        // construct info needed on view event crf page
        CRFDAO cdao = new CRFDAO(sm.getDataSource());
        CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
        int crfVersionId = eventCRF.getCRFVersionId();
        CRFBean cb = cdao.findByVersionId(crfVersionId);
        eventCRF.setCrf(cb);
        CRFVersionBean cvb = (CRFVersionBean) cvdao.findByPK(crfVersionId);
        eventCRF.setCrfVersion(cvb);
        // then get the definition so we can call
        // DisplayEventCRFBean.setFlags
        int studyEventId = eventCRF.getStudyEventId();
        StudyEventBean event = (StudyEventBean) sedao.findByPK(studyEventId);
        int studyEventDefinitionId = sedao.getDefinitionIdFromStudyEventId(studyEventId);
        StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
        StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(studyEventDefinitionId);
        event.setStudyEventDefinition(sed);
        request.setAttribute("event", event);
        EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
        StudyBean study = (StudyBean) sdao.findByPK(studySub.getStudyId());
        EventDefinitionCRFBean edc = edcdao.findByStudyEventDefinitionIdAndCRFId(study, studyEventDefinitionId, cb.getId());
        DisplayEventCRFBean dec = new DisplayEventCRFBean();
        dec.setEventCRF(eventCRF);
        dec.setFlags(eventCRF, ub, currentRole, edc.isDoubleEntry());
        // find all item data
        ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
        dnDao = new DiscrepancyNoteDAO(sm.getDataSource());
        ArrayList<ItemDataBean> itemData = iddao.findAllByEventCRFId(eventCRF.getId());
        request.setAttribute("items", itemData);
        if ("confirm".equalsIgnoreCase(action)) {
            request.setAttribute("displayEventCRF", dec);
            forwardPage(Page.DELETE_EVENT_CRF);
        } else {
            logger.info("submit to delete the event CRF from event");
            // OC-6303 Deleting Event CRF resets Show / Hide logic
            // delete records from DynamicItemForm and DynamicItemGroup
            // getDynamicsItemFormMetadataDao().delete(eventCRFId);
            // getDynamicsItemGroupMetadataDao().delete(eventCRFId);
            eventCRF.setOldStatus(eventCRF.getStatus());
            eventCRF.setStatus(Status.RESET);
            eventCRF.setUpdater(ub);
            ecdao.update(eventCRF);
            for (ItemDataBean itemdata : itemData) {
                // OC-6343 Rule behaviour must be reset if an Event CRF is deleted
                // delete the records from ruleActionRunLogDao
                List<RuleActionRunLogBean> ruleActionRunLog = getRuleActionRunLogDao().findAllItemData(itemdata.getId());
                if (ruleActionRunLog.size() != 0) {
                    getRuleActionRunLogDao().delete(itemdata.getId());
                }
                // OC-6344 Notes & Discrepancies must be set to "closed" when event CRF is deleted
                // parentDiscrepancyNoteList is the list of the parent DNs records only
                ArrayList<DiscrepancyNoteBean> parentDiscrepancyNoteList = getDnDao().findParentNotesOnlyByItemData(itemdata.getId());
                for (DiscrepancyNoteBean parentDiscrepancyNote : parentDiscrepancyNoteList) {
                    if (parentDiscrepancyNote.getResolutionStatusId() != 4) {
                        // if the DN's resolution status is
                        // not set to Closed
                        String description = resword.getString("dn_auto-closed_description");
                        String detailedNotes = resword.getString("dn_auto_closed_detailed_notes");
                        // create new DN record , new DN Map record , also update the parent record
                        createDiscrepancyNoteBean(description, detailedNotes, itemdata.getId(), study, ub, parentDiscrepancyNote);
                    }
                }
                iddao = new ItemDataDAO(sm.getDataSource());
                ifmdao = new ItemFormMetadataDAO(sm.getDataSource());
                ItemDataBean idBean = (ItemDataBean) iddao.findByPK(itemdata.getId());
                ItemFormMetadataBean ifmBean = ifmdao.findByItemIdAndCRFVersionId(idBean.getItemId(), crfVersionId);
                // Updating Dn_item_data_map actovated column into false for the existing DNs
                ArrayList<DiscrepancyNoteBean> dnBeans = getDnDao().findExistingNotesForItemData(itemdata.getId());
                if (dnBeans.size() != 0) {
                    DiscrepancyNoteBean dnBean = new DiscrepancyNoteBean();
                    dnBean.setEntityId(itemdata.getId());
                    dnBean.setActivated(false);
                    getDnDao().updateDnMapActivation(dnBean);
                }
                // Default Values are not addressed
                itemdata.setValue("");
                itemdata.setOldStatus(itemdata.getStatus());
                itemdata.setOwner(ub);
                itemdata.setStatus(Status.AVAILABLE);
                itemdata.setUpdater(ub);
                iddao.updateUser(itemdata);
                iddao.update(itemdata);
            }
            // OC-6291 event_crf status change
            eventCRF.setOldStatus(eventCRF.getStatus());
            eventCRF.setStatus(Status.AVAILABLE);
            eventCRF.setUpdater(ub);
            ecdao.update(eventCRF);
            if (event.getSubjectEventStatus().isCompleted() || event.getSubjectEventStatus().isSigned()) {
                event.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED);
                event.setUpdater(ub);
                sedao = new StudyEventDAO(sm.getDataSource());
                sedao.update(event);
            }
            String emailBody = respage.getString("the_event_CRF") + cb.getName() + respage.getString("has_been_deleted_from_the_event") + event.getStudyEventDefinition().getName() + ". " + respage.getString("has_been_deleted_from_the_event_cont");
            addPageMessage(emailBody);
            // sendEmail(emailBody);
            request.setAttribute("id", new Integer(studySubId).toString());
            forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET);
        }
    }
}

Example 39 with StudySubjectBean

use of org.akaza.openclinica.bean.managestudy.StudySubjectBean in project OpenClinica by OpenClinica.

the class AuditLogStudyServlet method processRequest.

/*
     * (non-Javadoc) Assume that we get the user id automatically. We will jump
     * from the edit user page if the user is an admin, they can get to see the
     * users' log
     * 
     * @see org.akaza.openclinica.control.core.SecureController#processRequest()
     */
/*
     * (non-Javadoc) redo this servlet to run the audits per study subject for
     * the study; need to add a studyId param and then use the
     * StudySubjectDAO.findAllByStudyOrderByLabel() method to grab a lot of
     * study subject beans and then return them much like in
     * ViewStudySubjectAuditLogServet.process()
     * 
     * currentStudy instead of studyId?
     */
@Override
protected void processRequest() throws Exception {
    int studyId = currentStudy.getId();
    StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
    SubjectDAO sdao = new SubjectDAO(sm.getDataSource());
    AuditDAO adao = new AuditDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
    EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
    StudyDAO studydao = new StudyDAO(sm.getDataSource());
    CRFDAO cdao = new CRFDAO(sm.getDataSource());
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    HashMap eventCRFAuditsHashMap = new HashMap();
    HashMap eventsHashMap = new HashMap();
    HashMap studySubjectAuditsHashMap = new HashMap();
    HashMap subjectHashMap = new HashMap();
    ArrayList studySubjects = subdao.findAllByStudyOrderByLabel(currentStudy);
    logger.info("found " + studySubjects.size() + " study subjects");
    request.setAttribute("studySubjects", studySubjects);
    for (int ss = 0; ss < studySubjects.size(); ss++) {
        ArrayList studySubjectAudits = new ArrayList();
        ArrayList eventCRFAudits = new ArrayList();
        StudySubjectBean studySubject = (StudySubjectBean) studySubjects.get(ss);
        // request.setAttribute("studySub"+ss, studySubject);
        SubjectBean subject = (SubjectBean) sdao.findByPK(studySubject.getSubjectId());
        subjectHashMap.put(new Integer(studySubject.getId()), subject);
        // logger.info("just set a subject with a status of
        // "+subject.getStatus().getName());
        // request.setAttribute("subject"+ss, subject);
        StudyBean study = (StudyBean) studydao.findByPK(studySubject.getStudyId());
        request.setAttribute("study", study);
        // hmm, repetitive work?
        // Show both study subject and subject audit events together
        // Study
        studySubjectAudits.addAll(adao.findStudySubjectAuditEvents(studySubject.getId()));
        // subject
        // value
        // changed
        // Global
        studySubjectAudits.addAll(adao.findSubjectAuditEvents(subject.getId()));
        // subject
        // value
        // changed
        studySubjectAuditsHashMap.put(new Integer(studySubject.getId()), studySubjectAudits);
        // request.setAttribute("studySubjectAudits"+ss,
        // studySubjectAudits);
        // Get the list of events
        ArrayList events = sedao.findAllByStudySubject(studySubject);
        for (int i = 0; i < events.size(); i++) {
            // Link study event definitions
            StudyEventBean studyEvent = (StudyEventBean) events.get(i);
            studyEvent.setStudyEventDefinition((StudyEventDefinitionBean) seddao.findByPK(studyEvent.getStudyEventDefinitionId()));
            // Link event CRFs
            studyEvent.setEventCRFs(ecdao.findAllByStudyEvent(studyEvent));
        }
        // for (int i = 0; i < events.size(); i++) {
        // StudyEventBean studyEvent = (StudyEventBean) events.get(i);
        // ArrayList eventCRFs = studyEvent.getEventCRFs();
        // for (int j = 0; j < eventCRFs.size(); j++) {
        // //Link CRF and CRF Versions
        // EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(j);
        // eventCRF.setCrfVersion((CRFVersionBean)
        // cvdao.findByPK(eventCRF.getCRFVersionId()));
        // eventCRF.setCrf((CRFBean)
        // cdao.findByVersionId(eventCRF.getCRFVersionId()));
        // //Get the event crf audits
        // eventCRFAudits.addAll(adao.findEventCRFAuditEvents(eventCRF.getId()));
        // }
        // }
        eventsHashMap.put(new Integer(studySubject.getId()), events);
    // request.setAttribute("events"+ss, events);
    // eventCRFAuditsHashMap.put(new Integer(studySubject.getId()),
    // eventCRFAudits);
    // request.setAttribute("eventCRFAudits"+ss, eventCRFAudits);
    }
    // request.setAttribute("eventCRFAudits", eventCRFAuditsHashMap);
    request.setAttribute("events", eventsHashMap);
    request.setAttribute("studySubjectAudits", studySubjectAuditsHashMap);
    request.setAttribute("study", currentStudy);
    request.setAttribute("subjects", subjectHashMap);
    // FormProcessor fp = new FormProcessor(request);
    //
    // AuditEventDAO aeDAO = new AuditEventDAO(sm.getDataSource());
    // ArrayList al = aeDAO.findAllByStudyId(currentStudy.getId());
    //
    // EntityBeanTable table = fp.getEntityBeanTable();
    // ArrayList allRows = AuditEventStudyRow.generateRowsFromBeans(al);
    // String[] columns = { "Date and Time", "Action", "Entity/Operation",
    // "Record ID", "Changes and Additions","Other Info" };
    // table.setColumns(new ArrayList(Arrays.asList(columns)));
    // table.hideColumnLink(4);
    // table.hideColumnLink(1);
    // table.hideColumnLink(5);
    // table.setQuery("AuditLogUser?userLogId="+userId, new HashMap());
    // String[] columns =
    // {resword.getString("date_and_time"),resword.getString("action_message"),
    // resword.getString("entity_operation"),
    // resword.getString("updated_by"),resword.getString("subject_unique_ID"),resword.getString("changes_and_additions"),
    // //"Other Info",
    // resword.getString("actions")};
    // table.setColumns(new ArrayList(Arrays.asList(columns)));
    // table.setAscendingSort(false);
    // table.hideColumnLink(1);
    // table.hideColumnLink(5);
    // table.hideColumnLink(6);
    // //table.hideColumnLink(7);
    // table.setQuery("AuditLogStudy", new HashMap());
    // table.setRows(allRows);
    // table.computeDisplay();
    //
    //
    // request.setAttribute("table", table);
    logger.warn("*** found servlet, sending to page ***");
    String pattn = "";
    String pattern2 = "";
    pattn = ResourceBundleProvider.getFormatBundle().getString("date_format_string");
    pattern2 = ResourceBundleProvider.getFormatBundle().getString("date_time_format_string");
    request.setAttribute("dateFormatPattern", pattn);
    request.setAttribute("dateTimeFormatPattern", pattern2);
    forwardPage(Page.AUDIT_LOG_STUDY);
}

Example 40 with StudySubjectBean

use of org.akaza.openclinica.bean.managestudy.StudySubjectBean in project OpenClinica by OpenClinica.

the class RemoveStudyServlet method processRequest.

@Override
public void processRequest() throws Exception {
    StudyDAO sdao = new StudyDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    int studyId = fp.getInt("id");
    StudyBean study = (StudyBean) sdao.findByPK(studyId);
    // find all sites
    ArrayList sites = (ArrayList) sdao.findAllByParent(studyId);
    // find all user and roles in the study, include ones in sites
    UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
    ArrayList userRoles = udao.findAllByStudyId(studyId);
    // find all subjects in the study, include ones in sites
    StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
    ArrayList subjects = ssdao.findAllByStudy(study);
    // find all events in the study, include ones in sites
    StudyEventDefinitionDAO sefdao = new StudyEventDefinitionDAO(sm.getDataSource());
    ArrayList definitions = sefdao.findAllByStudy(study);
    String action = request.getParameter("action");
    if (studyId == 0) {
        addPageMessage(respage.getString("please_choose_a_study_to_remove"));
        forwardPage(Page.STUDY_LIST_SERVLET);
    } else {
        if ("confirm".equalsIgnoreCase(action)) {
            request.setAttribute("studyToRemove", study);
            request.setAttribute("sitesToRemove", sites);
            request.setAttribute("userRolesToRemove", userRoles);
            request.setAttribute("subjectsToRemove", subjects);
            request.setAttribute("definitionsToRemove", definitions);
            forwardPage(Page.REMOVE_STUDY);
        } else {
            logger.info("submit to remove the study");
            // change all statuses to unavailable
            StudyDAO studao = new StudyDAO(sm.getDataSource());
            study.setOldStatus(study.getStatus());
            study.setStatus(Status.DELETED);
            study.setUpdater(ub);
            study.setUpdatedDate(new Date());
            studao.update(study);
            // remove all sites
            for (int i = 0; i < sites.size(); i++) {
                StudyBean site = (StudyBean) sites.get(i);
                if (!site.getStatus().equals(Status.DELETED)) {
                    site.setOldStatus(site.getStatus());
                    site.setStatus(Status.AUTO_DELETED);
                    site.setUpdater(ub);
                    site.setUpdatedDate(new Date());
                    sdao.update(site);
                }
            }
            // remove all users and roles
            for (int i = 0; i < userRoles.size(); i++) {
                StudyUserRoleBean role = (StudyUserRoleBean) userRoles.get(i);
                logger.info("remove user role" + role.getName());
                if (!role.getStatus().equals(Status.DELETED)) {
                    role.setStatus(Status.AUTO_DELETED);
                    role.setUpdater(ub);
                    role.setUpdatedDate(new Date());
                    udao.updateStudyUserRole(role, role.getUserName());
                }
            }
            // YW << bug fix for that current active study has been deleted
            if (study.getId() == currentStudy.getId()) {
                currentStudy.setStatus(Status.DELETED);
                currentRole.setStatus(Status.DELETED);
            } else // (auto-removed)
            if (currentStudy.getParentStudyId() == study.getId()) {
                currentStudy.setStatus(Status.AUTO_DELETED);
                // we may need handle this later?
                currentRole.setStatus(Status.DELETED);
            }
            // remove all subjects
            for (int i = 0; i < subjects.size(); i++) {
                StudySubjectBean subject = (StudySubjectBean) subjects.get(i);
                if (!subject.getStatus().equals(Status.DELETED)) {
                    subject.setStatus(Status.AUTO_DELETED);
                    subject.setUpdater(ub);
                    subject.setUpdatedDate(new Date());
                    ssdao.update(subject);
                }
            }
            // remove all study_group_class
            // changed by jxu on 08-31-06, to fix the problem of no study_id
            // in study_group table
            StudyGroupClassDAO sgcdao = new StudyGroupClassDAO(sm.getDataSource());
            StudyGroupDAO sgdao = new StudyGroupDAO(sm.getDataSource());
            SubjectGroupMapDAO sgmdao = new SubjectGroupMapDAO(sm.getDataSource());
            // YW 09-27-2007, enable status updating for StudyGroupClassBean
            ArrayList groups = sgcdao.findAllByStudy(study);
            for (int i = 0; i < groups.size(); i++) {
                StudyGroupClassBean group = (StudyGroupClassBean) groups.get(i);
                if (!group.getStatus().equals(Status.DELETED)) {
                    group.setStatus(Status.AUTO_DELETED);
                    group.setUpdater(ub);
                    group.setUpdatedDate(new Date());
                    sgcdao.update(group);
                    // all subject_group_map
                    ArrayList subjectGroupMaps = sgmdao.findAllByStudyGroupClassId(group.getId());
                    for (int j = 0; j < subjectGroupMaps.size(); j++) {
                        SubjectGroupMapBean sgMap = (SubjectGroupMapBean) subjectGroupMaps.get(j);
                        if (!sgMap.getStatus().equals(Status.DELETED)) {
                            sgMap.setStatus(Status.AUTO_DELETED);
                            sgMap.setUpdater(ub);
                            sgMap.setUpdatedDate(new Date());
                            sgmdao.update(sgMap);
                        }
                    }
                }
            }
            ArrayList groupClasses = sgcdao.findAllActiveByStudy(study);
            for (int i = 0; i < groupClasses.size(); i++) {
                StudyGroupClassBean gc = (StudyGroupClassBean) groupClasses.get(i);
                if (!gc.getStatus().equals(Status.DELETED)) {
                    gc.setStatus(Status.AUTO_DELETED);
                    gc.setUpdater(ub);
                    gc.setUpdatedDate(new Date());
                    sgcdao.update(gc);
                }
            }
            // remove all event definitions and event
            EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
            StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
            for (int i = 0; i < definitions.size(); i++) {
                StudyEventDefinitionBean definition = (StudyEventDefinitionBean) definitions.get(i);
                if (!definition.getStatus().equals(Status.DELETED)) {
                    definition.setStatus(Status.AUTO_DELETED);
                    definition.setUpdater(ub);
                    definition.setUpdatedDate(new Date());
                    sefdao.update(definition);
                    ArrayList edcs = (ArrayList) edcdao.findAllByDefinition(definition.getId());
                    for (int j = 0; j < edcs.size(); j++) {
                        EventDefinitionCRFBean edc = (EventDefinitionCRFBean) edcs.get(j);
                        if (!edc.getStatus().equals(Status.DELETED)) {
                            edc.setStatus(Status.AUTO_DELETED);
                            edc.setUpdater(ub);
                            edc.setUpdatedDate(new Date());
                            edcdao.update(edc);
                        }
                    }
                    ArrayList events = (ArrayList) sedao.findAllByDefinition(definition.getId());
                    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
                    for (int j = 0; j < events.size(); j++) {
                        StudyEventBean event = (StudyEventBean) events.get(j);
                        if (!event.getStatus().equals(Status.DELETED)) {
                            event.setStatus(Status.AUTO_DELETED);
                            event.setUpdater(ub);
                            event.setUpdatedDate(new Date());
                            sedao.update(event);
                            ArrayList eventCRFs = ecdao.findAllByStudyEvent(event);
                            ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
                            for (int k = 0; k < eventCRFs.size(); k++) {
                                EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(k);
                                if (!eventCRF.getStatus().equals(Status.DELETED)) {
                                    eventCRF.setOldStatus(eventCRF.getStatus());
                                    eventCRF.setStatus(Status.AUTO_DELETED);
                                    eventCRF.setUpdater(ub);
                                    eventCRF.setUpdatedDate(new Date());
                                    ecdao.update(eventCRF);
                                    ArrayList itemDatas = iddao.findAllByEventCRFId(eventCRF.getId());
                                    for (int a = 0; a < itemDatas.size(); a++) {
                                        ItemDataBean item = (ItemDataBean) itemDatas.get(a);
                                        if (!item.getStatus().equals(Status.DELETED)) {
                                            item.setOldStatus(item.getStatus());
                                            item.setStatus(Status.AUTO_DELETED);
                                            item.setUpdater(ub);
                                            item.setUpdatedDate(new Date());
                                            iddao.update(item);
                                        }
                                    }
                                }
                            }
                        }
                    }
                }
            }
            // for definitions
            DatasetDAO datadao = new DatasetDAO(sm.getDataSource());
            ArrayList dataset = datadao.findAllByStudyId(study.getId());
            for (int i = 0; i < dataset.size(); i++) {
                DatasetBean data = (DatasetBean) dataset.get(i);
                if (!data.getStatus().equals(Status.DELETED)) {
                    data.setStatus(Status.AUTO_DELETED);
                    data.setUpdater(ub);
                    data.setUpdatedDate(new Date());
                    datadao.update(data);
                }
            }
            addPageMessage(resexception.getString("this_study_has_been_removed_succesfully"));
            forwardPage(Page.STUDY_LIST_SERVLET);
        }
    }
}