Examples with ElementRefBean org.akaza.openclinica.bean.odmbeans.ElementRefBean used on opensource projects

Example 11 with ElementRefBean

use of org.akaza.openclinica.bean.odmbeans.ElementRefBean in project OpenClinica by OpenClinica.

the class MetaDataReportBean method addItemGroupDef.

public void addItemGroupDef(boolean isStudy, String currentIndent) {
    StringBuffer xml = this.getXmlOutput();
    String indent = this.getIndent();
    ArrayList<ItemGroupDefBean> igs = (ArrayList<ItemGroupDefBean>) odmstudy.getMetaDataVersion().getItemGroupDefs();
    for (ItemGroupDefBean ig : igs) {
        if (ig.getComment().length() > 0) {
            xml.append(currentIndent + "<ItemGroupDef OID=\"" + StringEscapeUtils.escapeXml(ig.getOid()) + "\" Name=\"" + StringEscapeUtils.escapeXml(ig.getName()) + "\" Repeating=\"" + ig.getRepeating() + "\" SASDatasetName=\"" + this.getSasNameValidator().getValidName(ig.getPreSASDatasetName()) + "\" Comment=\"" + StringEscapeUtils.escapeXml(ig.getComment()) + "\">");
        } else {
            xml.append(currentIndent + "<ItemGroupDef OID=\"" + StringEscapeUtils.escapeXml(ig.getOid()) + "\" Name=\"" + StringEscapeUtils.escapeXml(ig.getName()) + "\" Repeating=\"" + ig.getRepeating() + "\" SASDatasetName=\"" + this.getSasNameValidator().getValidName(ig.getPreSASDatasetName()) + "\">");
        }
        xml.append(nls);
        ArrayList<ElementRefBean> items = (ArrayList<ElementRefBean>) ig.getItemRefs();
        for (ElementRefBean item : items) {
            xml.append(currentIndent + indent + "<ItemRef ItemOID=\"" + StringEscapeUtils.escapeXml(item.getElementDefOID()) + "\" OrderNumber=\"" + item.getOrderNumber() + "\" Mandatory=\"" + item.getMandatory() + "\"/>");
            xml.append(nls);
        }
        // add ItemGroupDetails for oc1.3
        if ("oc1.3".equals(this.getODMVersion())) {
        // this.addItemGroupDetails(ig.getItemGroupDetails(), currentIndent + indent);
        }
        xml.append(currentIndent + "</ItemGroupDef>");
        xml.append(nls);
    }
}

Example 12 with ElementRefBean

use of org.akaza.openclinica.bean.odmbeans.ElementRefBean in project OpenClinica by OpenClinica.

the class MetaDataReportBean method addFormDef.

public void addFormDef(boolean isStudy, String currentIndent) {
    StringBuffer xml = this.getXmlOutput();
    String indent = this.getIndent();
    ArrayList<FormDefBean> forms = (ArrayList<FormDefBean>) odmstudy.getMetaDataVersion().getFormDefs();
    for (FormDefBean form : forms) {
        xml.append(currentIndent + "<FormDef OID=\"" + StringEscapeUtils.escapeXml(form.getOid()) + "\" Name=\"" + StringEscapeUtils.escapeXml(form.getName()) + "\" Repeating=\"" + form.getRepeating() + "\">");
        xml.append(nls);
        ArrayList<ElementRefBean> igs = (ArrayList<ElementRefBean>) form.getItemGroupRefs();
        for (ElementRefBean ig : igs) {
            xml.append(currentIndent + indent + "<ItemGroupRef ItemGroupOID=\"" + StringEscapeUtils.escapeXml(ig.getElementDefOID()) + "\" Mandatory=\"" + ig.getMandatory() + "\"/>");
            xml.append(nls);
        }
        ArrayList<ElementRefBean> formLayoutRefs = (ArrayList<ElementRefBean>) form.getFormLayoutRefs();
        for (ElementRefBean formLayoutRef : formLayoutRefs) {
            xml.append(currentIndent + indent + "<OpenClinica:FormLayoutDef OID=\"" + StringEscapeUtils.escapeXml(formLayoutRef.getName()) + "\">");
            xml.append(nls);
            xml.append(currentIndent + indent + "<OpenClinica:URL>" + StringEscapeUtils.escapeXml(formLayoutRef.getUrl()) + "</OpenClinica:URL>");
            xml.append(nls);
            xml.append(currentIndent + indent + "</OpenClinica:FormLayoutDef>");
            xml.append(nls);
        }
        // add FormDetails for oc1.3
        if ("oc1.3".equals(this.getODMVersion())) {
            this.addFormDetails(form.getFormDetails(), currentIndent + indent);
        }
        xml.append(currentIndent + "</FormDef>");
        xml.append(nls);
    }
}

Example 13 with ElementRefBean

use of org.akaza.openclinica.bean.odmbeans.ElementRefBean in project OpenClinica by OpenClinica.

the class MetaDataReportBean method addProtocol.

public void addProtocol(String currentIndent) {
    // The protocol lists the kinds of study events that can occur within a
    // specific version of a Study.
    StringBuffer xml = this.getXmlOutput();
    String indent = this.getIndent();
    xml.append(currentIndent + "<Protocol>");
    xml.append(nls);
    for (ElementRefBean seref : odmstudy.getMetaDataVersion().getProtocol().getStudyEventRefs()) {
        // At this point, Mandatory has been set yes
        xml.append(currentIndent + indent + "<StudyEventRef StudyEventOID=\"" + StringEscapeUtils.escapeXml(seref.getElementDefOID()) + "\" OrderNumber=\"" + seref.getOrderNumber() + "\" Mandatory=\"Yes\"/>");
        xml.append(nls);
    }
    xml.append(currentIndent + "</Protocol>");
    xml.append(nls);
}

Example 14 with ElementRefBean

use of org.akaza.openclinica.bean.odmbeans.ElementRefBean in project OpenClinica by OpenClinica.

the class MetaDataReportBean method addStudyEventDef.

public void addStudyEventDef(boolean isStudy, String currentIndent) {
    StringBuffer xml = this.getXmlOutput();
    String indent = this.getIndent();
    ArrayList<StudyEventDefBean> seds = (ArrayList<StudyEventDefBean>) odmstudy.getMetaDataVersion().getStudyEventDefs();
    for (StudyEventDefBean sed : seds) {
        xml.append(currentIndent + "<StudyEventDef OID=\"" + StringEscapeUtils.escapeXml(sed.getOid()) + "\"  Name=\"" + StringEscapeUtils.escapeXml(sed.getName()) + "\" Repeating=\"" + sed.getRepeating() + "\" Type=\"" + sed.getType() + "\">");
        xml.append(nls);
        ArrayList<ElementRefBean> formRefs = (ArrayList<ElementRefBean>) sed.getFormRefs();
        for (ElementRefBean formRef : formRefs) {
            xml.append(currentIndent + indent + "<FormRef FormOID=\"" + StringEscapeUtils.escapeXml(formRef.getElementDefOID()) + "\" Mandatory=\"" + formRef.getMandatory() + "\">");
            xml.append(nls);
            ConfigurationParameters conf = formRef.getConfigurationParameters();
            if (conf != null) {
                xml.append(currentIndent + indent + indent + "<OpenClinica:ConfigurationParameters HideCRF=\"" + (conf.isHiddenCrf() ? "Yes" : "No") + "\" ParticipantForm=\"" + (conf.isParticipantForm() ? "Yes" : "No") + "\" AllowAnonymousSubmission=\"" + (conf.isAllowAnynymousSubmission() ? "Yes" : "No") + "\" SubmissionUrl=\"" + conf.getSubmissionUrl() + "\" Offline=\"" + (conf.isOffline() ? "Yes" : "No") + "\"/>");
                xml.append(nls);
                ArrayList<ElementRefBean> formLayoutRefs = (ArrayList<ElementRefBean>) formRef.getFormLayoutRefs();
                for (ElementRefBean formLayoutRef : formLayoutRefs) {
                    xml.append(currentIndent + indent + indent + "<OpenClinica:FormLayoutRef OID=\"" + StringEscapeUtils.escapeXml(formLayoutRef.getName()) + "\" IsDefaultVersion=\"" + (formLayoutRef.isDefaultVersion() ? "Yes" : "No") + "\"/>");
                    xml.append(nls);
                }
            }
            xml.append(currentIndent + indent + "</FormRef>");
            xml.append(nls);
        }
        // MR=416
        if ("oc1.3".equals(this.getODMVersion())) {
            this.addEventDefinitionDetails(sed.getEventDefinitionDetais(), currentIndent + indent);
        }
        xml.append(currentIndent + "</StudyEventDef>");
        xml.append(nls);
    }
}

Example 15 with ElementRefBean

use of org.akaza.openclinica.bean.odmbeans.ElementRefBean in project OpenClinica by OpenClinica.

the class GenerateClinicalDataServiceImpl method fillDNObject.

private void fillDNObject(DiscrepancyNoteBean dnNoteBean, ArrayList<DiscrepancyNoteBean> dnNotes, boolean addDN, DiscrepancyNote dn, String columnName) {
    if (dn.getParentDiscrepancyNote() != null) {
    } else {
        dnNoteBean = new DiscrepancyNoteBean();
        dnNoteBean.setStatus(dn.getResolutionStatus().getName());
        dnNoteBean.setNoteType(dn.getEntityType());
        dnNoteBean.setOid("DN_" + dn.getDiscrepancyNoteId());
        dnNoteBean.setNoteType(dn.getDiscrepancyNoteType().getName());
        dnNoteBean.setDateUpdated(dn.getDateCreated());
        dnNoteBean.setEntityName(columnName);
        for (DiscrepancyNote childDN : dn.getChildDiscrepancyNotes()) {
            ChildNoteBean childNoteBean = new ChildNoteBean();
            childNoteBean.setOid("CDN_" + childDN.getDiscrepancyNoteId());
            ElementRefBean userRef = new ElementRefBean();
            childNoteBean.setDescription(childDN.getDescription());
            childNoteBean.setStatus(childDN.getResolutionStatus().getName());
            childNoteBean.setDetailedNote(childDN.getDetailedNotes());
            childNoteBean.setDateCreated(childDN.getDateCreated());
            if (childDN.getUserAccountByOwnerId() != null) {
                childNoteBean.setOwnerUserName(childDN.getUserAccountByOwnerId().getUserName());
                childNoteBean.setOwnerFirstName(childDN.getUserAccountByOwnerId().getFirstName());
                childNoteBean.setOwnerLastName(childDN.getUserAccountByOwnerId().getLastName());
            }
            if (childDN.getUserAccount() != null) {
                userRef.setElementDefOID("USR_" + childDN.getUserAccount().getUserId());
                userRef.setUserName(childDN.getUserAccount().getUserName());
                userRef.setFullName(childDN.getUserAccount().getFirstName() + " " + childDN.getUserAccount().getLastName());
            } else {
                userRef.setElementDefOID("");
                userRef.setUserName("");
                userRef.setFullName("");
            }
            childNoteBean.setUserRef(userRef);
            dnNoteBean.getChildNotes().add(childNoteBean);
        }
        dnNoteBean.setNumberOfChildNotes(dnNoteBean.getChildNotes().size());
        if (!dnNotes.contains(dnNoteBean)) {
            dnNotes.add(dnNoteBean);
        }
    }
}