Examples with MetaDataVersionBean org.akaza.openclinica.bean.odmbeans.MetaDataVersionBean used on opensource projects

Example 1 with MetaDataVersionBean

use of org.akaza.openclinica.bean.odmbeans.MetaDataVersionBean in project OpenClinica by OpenClinica.

the class MetadataUnit method collectMetaDataVersion.

private void collectMetaDataVersion() {
    ArrayList<StudyEventDefinitionBean> sedBeansInStudy = (ArrayList<StudyEventDefinitionBean>) studyBase.getSedBeansInStudy();
    if (sedBeansInStudy == null || sedBeansInStudy.size() < 1) {
        logger.info("null, because there is no study event definition in this study.");
        return;
    }
    StudyBean study = studyBase.getStudy();
    StudyConfigService studyConfig = new StudyConfigService(this.ds);
    study = studyConfig.setParametersForStudy(study);
    MetaDataVersionBean metadata = this.odmStudy.getMetaDataVersion();
    metadata.setStudy(study);
    StudyParameterValueDAO spvdao = new StudyParameterValueDAO(this.ds);
    int parentId = study.getParentStudyId() > 0 ? study.getParentStudyId() : study.getId();
    StudyParameterValueBean spv = spvdao.findByHandleAndStudy(parentId, "discrepancyManagement");
    metadata.setSoftHard(spv.getValue().equalsIgnoreCase("true") ? "Hard" : "Soft");
    OdmExtractDAO oedao = new OdmExtractDAO(this.ds);
    int studyId = study.getId();
    int parentStudyId = study.getParentStudyId() > 0 ? study.getParentStudyId() : studyId;
    if (this.getCategory() == 1 && study.isSite(study.getParentStudyId())) {
        // populate MetaDataVersion attributes
        if (dataset != null) {
            metadata.setOid(dataset.getODMMetaDataVersionOid() + "-" + study.getOid());
            metadata.setName(dataset.getODMMetaDataVersionName() + "-" + study.getOid());
            this.setParentMetaDataVersionOid(dataset.getODMMetaDataVersionOid());
        }
        if (metadata.getOid() == null || metadata.getOid().length() <= 0) {
            metadata.setOid("v1.0.0" + "-" + study.getOid());
            this.setParentMetaDataVersionOid("v1.0.0");
        }
        if (metadata.getName() == null || metadata.getName().length() <= 0) {
            metadata.setName("MetaDataVersion_v1.0.0" + "-" + study.getOid());
        }
        // populate Include
        this.collectIncludeFromParentInSameFile();
        // populate protocol
        oedao.getUpdatedSiteMetadata(parentStudyId, studyId, metadata, this.odmBean.getODMVersion());
    } else {
        if (dataset != null) {
            metadata.setOid(dataset.getODMMetaDataVersionOid());
            metadata.setName(dataset.getODMMetaDataVersionName());
        }
        if (metadata.getOid() == null || metadata.getOid().length() <= 0) {
            metadata.setOid("v1.0.0");
        }
        if (metadata.getName() == null || metadata.getName().length() <= 0) {
            metadata.setName("MetaDataVersion_v1.0.0");
        }
        // populate Include
        String psOid = new String();
        String pmOid = new String();
        if (dataset != null) {
            psOid = dataset.getODMPriorStudyOid();
            pmOid = dataset.getODMPriorMetaDataVersionOid();
        }
        if (pmOid != null && pmOid.length() > 0) {
            MetaDataVersionIncludeBean ib = metadata.getInclude();
            ib.setMetaDataVersionOID(pmOid);
            if (psOid != null && psOid.length() > 0) {
                ib.setStudyOID(psOid);
            } else {
                ib.setStudyOID(study.getOid());
            }
        }
        // populate protocol
        // Set<Integer> nullCodeSet = oedao.getMetadata(parentStudyId,
        // studyId,
        // metadata, this.getODMBean().getODMVersion());
        // studyBase.setNullClSet(nullCodeSet);
        oedao.getMetadata(parentStudyId, studyId, metadata, this.odmBean.getODMVersion());
        metadata.setRuleSetRules(getRuleSetRuleDao().findByRuleSetStudyIdAndStatusAvail(parentStudyId));
    }
}

Example 2 with MetaDataVersionBean

use of org.akaza.openclinica.bean.odmbeans.MetaDataVersionBean in project OpenClinica by OpenClinica.

the class MetaDataReportBean method addStudyMetaDataVersion.

public void addStudyMetaDataVersion(boolean isDataset) {
    StringBuffer xml = this.getXmlOutput();
    String indent = this.getIndent();
    String currentIndent = indent + indent;
    String ODMVersion = this.getODMVersion();
    MetaDataVersionBean meta = odmstudy.getMetaDataVersion();
    xml.append(currentIndent + "<MetaDataVersion OID=\"" + StringEscapeUtils.escapeXml(meta.getOid()) + "\" Name=\"" + StringEscapeUtils.escapeXml(meta.getName()) + "\">");
    xml.append(nls);
    if (meta.getInclude() != null) {
        String pmOid = meta.getInclude().getMetaDataVersionOID();
        if (pmOid != null && pmOid.length() > 0) {
            xml.append(currentIndent + indent);
            String psOid = meta.getInclude().getStudyOID();
            if (psOid != null && psOid.length() > 0) {
                xml.append("<Include StudyOID =\"" + StringEscapeUtils.escapeXml(psOid) + "\"");
            } else {
                xml.append("<Include StudyOID =\"" + StringEscapeUtils.escapeXml(odmstudy.getOid()) + "\"");
            }
            xml.append(" MetaDataVersionOID=\"" + StringEscapeUtils.escapeXml(pmOid) + "\"/>");
            xml.append(nls);
        }
    }
    //
    addProtocol(currentIndent + indent);
    boolean isStudy = meta.getStudy().getParentStudyId() > 0 ? false : true;
    if (meta.getStudyEventDefs().size() > 0) {
        addStudyEventDef(isStudy, currentIndent + indent);
        if (meta.getItemGroupDefs().size() > 0) {
            addFormDef(isStudy, currentIndent + indent);
            addItemGroupDef(isStudy, currentIndent + indent);
            addItemDef(isStudy, currentIndent + indent);
            addCodeList(currentIndent + indent);
            if ("oc1.2".equalsIgnoreCase(ODMVersion)) {
                addMultiSelectList(currentIndent + indent);
                addStudyGroupClassList(currentIndent + indent);
            } else if ("oc1.3".equalsIgnoreCase(ODMVersion)) {
                addMultiSelectList(currentIndent + indent);
                addStudyGroupClassList(currentIndent + indent);
                if (meta.getStudy().getParentStudyId() > 0) {
                    this.addStudyDetails(currentIndent + indent);
                } else {
                    this.addStudyDetails(currentIndent + indent);
                }
            }
        }
    } else if (odmstudy.getOid().equals(MetadataUnit.FAKE_STUDY_OID)) {
        addFormDef(isStudy, currentIndent + indent);
        addItemGroupDef(isStudy, currentIndent + indent);
        addItemDef(isStudy, currentIndent + indent);
    }
    addNodeRulesData(meta);
    xml.append(currentIndent + "</MetaDataVersion>");
    xml.append(nls);
}

Example 3 with MetaDataVersionBean

use of org.akaza.openclinica.bean.odmbeans.MetaDataVersionBean in project OpenClinica by OpenClinica.

the class MetadataUnit method collectMetaDataVersion.

/**
     * To retrieve the ODM with form version OID as one of the parameters
     * @param formVersionOID
     */
private void collectMetaDataVersion(String formVersionOID) {
    StudyBean study = studyBase.getStudy();
    OdmExtractDAO oedao = new OdmExtractDAO(this.ds);
    MetaDataVersionBean metadata = this.odmStudy.getMetaDataVersion();
    ODMBean odmBean = new ODMBean();
    odmBean.setODMVersion("oc1.3");
    setOdmBean(odmBean);
    ArrayList<StudyEventDefinitionBean> sedBeansInStudy = (ArrayList<StudyEventDefinitionBean>) studyBase.getSedBeansInStudy();
    if (sedBeansInStudy == null || sedBeansInStudy.size() < 1) {
        logger.info("null, because there is no study event definition in this study.");
        return;
    }
    if (metadata.getOid() == null || metadata.getOid().length() <= 0) {
        metadata.setOid("v1.0.0");
    }
    if (metadata.getName() == null || metadata.getName().length() <= 0) {
        metadata.setName("MetaDataVersion_v1.0.0");
    }
    oedao.getODMMetadataForForm(metadata, formVersionOID, this.odmBean.getODMVersion());
}