Examples with StudyParameterValueBean org.akaza.openclinica.bean.service.StudyParameterValueBean used on opensource projects

Example 41 with StudyParameterValueBean

use of org.akaza.openclinica.bean.service.StudyParameterValueBean in project OpenClinica by OpenClinica.

the class UpdateStudyServletNew method submitStudy.

private void submitStudy(StudyBean newStudy) {
    StudyDAO sdao = new StudyDAO(sm.getDataSource());
    StudyParameterValueDAO spvdao = new StudyParameterValueDAO(sm.getDataSource());
    StudyBean study1 = newStudy;
    logger.info("study bean to be updated:" + study1.getName());
    study1.setUpdatedDate(new Date());
    study1.setUpdater((UserAccountBean) session.getAttribute("userBean"));
    sdao.update(study1);
    ArrayList siteList = (ArrayList) sdao.findAllByParent(newStudy.getId());
    if (siteList.size() > 0) {
        sdao.updateSitesStatus(study1);
    }
    StudyParameterValueBean spv = new StudyParameterValueBean();
    spv.setStudyId(study1.getId());
    spv.setParameter("collectDob");
    spv.setValue(new Integer(study1.getStudyParameterConfig().getCollectDob()).toString());
    updateParameter(spvdao, spv);
    spv.setParameter("discrepancyManagement");
    spv.setValue(study1.getStudyParameterConfig().getDiscrepancyManagement());
    updateParameter(spvdao, spv);
    spv.setParameter("genderRequired");
    spv.setValue(study1.getStudyParameterConfig().getGenderRequired());
    updateParameter(spvdao, spv);
    spv.setParameter("subjectPersonIdRequired");
    spv.setValue(study1.getStudyParameterConfig().getSubjectPersonIdRequired());
    updateParameter(spvdao, spv);
    spv.setParameter("interviewerNameRequired");
    spv.setValue(study1.getStudyParameterConfig().getInterviewerNameRequired());
    updateParameter(spvdao, spv);
    spv.setParameter("interviewerNameDefault");
    spv.setValue(study1.getStudyParameterConfig().getInterviewerNameDefault());
    updateParameter(spvdao, spv);
    spv.setParameter("interviewerNameEditable");
    spv.setValue(study1.getStudyParameterConfig().getInterviewerNameEditable());
    updateParameter(spvdao, spv);
    // BWP 1/12/2009 3169 Update interviewerNameEditable and
    // interviewDateEditable parameters for all sites>>
    List<StudyBean> sites = new ArrayList<StudyBean>();
    sites = (ArrayList) sdao.findAllByParent(newStudy.getId());
    if (sites != null && !sites.isEmpty()) {
        updateInterviewerForSites(newStudy, sites, spvdao, "interviewerNameEditable");
    }
    // >>
    spv.setParameter("interviewDateRequired");
    spv.setValue(study1.getStudyParameterConfig().getInterviewDateRequired());
    updateParameter(spvdao, spv);
    spv.setParameter("interviewDateDefault");
    spv.setValue(study1.getStudyParameterConfig().getInterviewDateDefault());
    updateParameter(spvdao, spv);
    spv.setParameter("interviewDateEditable");
    spv.setValue(study1.getStudyParameterConfig().getInterviewDateEditable());
    updateParameter(spvdao, spv);
    // BWP 1/12/2009 3169>>
    if (sites != null && !sites.isEmpty()) {
        updateInterviewerForSites(newStudy, sites, spvdao, "interviewDateEditable");
    }
    // >>
    spv.setParameter("subjectIdGeneration");
    spv.setValue(study1.getStudyParameterConfig().getSubjectIdGeneration());
    updateParameter(spvdao, spv);
    spv.setParameter("subjectIdPrefixSuffix");
    spv.setValue(study1.getStudyParameterConfig().getSubjectIdPrefixSuffix());
    updateParameter(spvdao, spv);
    spv.setParameter("personIdShownOnCRF");
    spv.setValue(study1.getStudyParameterConfig().getPersonIdShownOnCRF());
    updateParameter(spvdao, spv);
    spv.setParameter("secondaryLabelViewable");
    spv.setValue(study1.getStudyParameterConfig().getSecondaryLabelViewable());
    updateParameter(spvdao, spv);
    // tbh, 06/04/2009 3684>>
    spv.setParameter("adminForcedReasonForChange");
    spv.setValue(study1.getStudyParameterConfig().getAdminForcedReasonForChange());
    updateParameter(spvdao, spv);
    // >>
    // AH 08/26/2010 5732
    spv.setParameter("eventLocationRequired");
    spv.setValue(study1.getStudyParameterConfig().getEventLocationRequired());
    updateParameter(spvdao, spv);
    StudyBean curStudy = (StudyBean) session.getAttribute("study");
    if (curStudy != null && study1.getId() == curStudy.getId()) {
        super.currentStudy = study1;
        session.setAttribute("study", study1);
    }
    // update manage_pedigrees for all sites
    ArrayList children = (ArrayList) sdao.findAllByParent(study1.getId());
    for (int i = 0; i < children.size(); i++) {
        StudyBean child = (StudyBean) children.get(i);
        // same as parent's type
        child.setType(study1.getType());
        child.setUpdatedDate(new Date());
        child.setUpdater(ub);
        sdao.update(child);
        // YW << update "collectDob" and "genderRequired" for sites
        StudyParameterValueBean childspv = new StudyParameterValueBean();
        childspv.setStudyId(child.getId());
        childspv.setParameter("collectDob");
        childspv.setValue(new Integer(study1.getStudyParameterConfig().getCollectDob()).toString());
        updateParameter(spvdao, childspv);
        childspv.setParameter("genderRequired");
        childspv.setValue(study1.getStudyParameterConfig().getGenderRequired());
        updateParameter(spvdao, childspv);
    }
}

Example 42 with StudyParameterValueBean

use of org.akaza.openclinica.bean.service.StudyParameterValueBean in project OpenClinica by OpenClinica.

the class UpdateStudyServletNew method updateParameter.

private void updateParameter(StudyParameterValueDAO spvdao, StudyParameterValueBean spv) {
    StudyParameterValueBean spv1 = spvdao.findByHandleAndStudy(spv.getStudyId(), spv.getParameter());
    logger.debug("found parameter: " + spv.getParameter());
    if (spv1.getId() > 0) {
        spvdao.update(spv);
        logger.debug("updating");
    } else {
        spvdao.create(spv);
        logger.debug("creating");
    }
}

Example 43 with StudyParameterValueBean

use of org.akaza.openclinica.bean.service.StudyParameterValueBean in project OpenClinica by OpenClinica.

the class UpdateStudyServletNew method updateInterviewerForSites.

private void updateInterviewerForSites(StudyBean studyBean, List<StudyBean> sites, StudyParameterValueDAO studyParameterValueDAO, String parameterType) {
    StudyParameterValueBean studyParameterValueBean = new StudyParameterValueBean();
    if ("interviewerNameEditable".equalsIgnoreCase(parameterType)) {
        studyParameterValueBean.setParameter("interviewerNameEditable");
        studyParameterValueBean.setValue(studyBean.getStudyParameterConfig().getInterviewerNameEditable());
    } else {
        studyParameterValueBean.setParameter("interviewDateEditable");
        studyParameterValueBean.setValue(studyBean.getStudyParameterConfig().getInterviewDateEditable());
    }
    for (StudyBean siteBean : sites) {
        studyParameterValueBean.setStudyId(siteBean.getId());
        updateParameter(studyParameterValueDAO, studyParameterValueBean);
    }
}

Example 44 with StudyParameterValueBean

use of org.akaza.openclinica.bean.service.StudyParameterValueBean in project OpenClinica by OpenClinica.

the class UpdateStudyServlet method submitStudy.

private void submitStudy() {
    StudyDAO sdao = new StudyDAO(sm.getDataSource());
    StudyParameterValueDAO spvdao = new StudyParameterValueDAO(sm.getDataSource());
    StudyBean study1 = (StudyBean) session.getAttribute("newStudy");
    logger.info("study bean to be updated:" + study1.getName());
    study1.setUpdatedDate(new Date());
    study1.setUpdater((UserAccountBean) session.getAttribute("userBean"));
    logger.debug("study's parentId=" + study1.getParentStudyId());
    sdao.update(study1);
    StudyParameterValueBean spv = new StudyParameterValueBean();
    spv.setStudyId(study1.getId());
    spv.setParameter("collectDob");
    spv.setValue(new Integer(study1.getStudyParameterConfig().getCollectDob()).toString());
    updateParameter(spvdao, spv);
    spv.setParameter("discrepancyManagement");
    spv.setValue(study1.getStudyParameterConfig().getDiscrepancyManagement());
    updateParameter(spvdao, spv);
    spv.setParameter("genderRequired");
    spv.setValue(study1.getStudyParameterConfig().getGenderRequired());
    updateParameter(spvdao, spv);
    spv.setParameter("subjectPersonIdRequired");
    spv.setValue(study1.getStudyParameterConfig().getSubjectPersonIdRequired());
    updateParameter(spvdao, spv);
    spv.setParameter("interviewerNameRequired");
    spv.setValue(study1.getStudyParameterConfig().getInterviewerNameRequired());
    updateParameter(spvdao, spv);
    spv.setParameter("interviewerNameDefault");
    spv.setValue(study1.getStudyParameterConfig().getInterviewerNameDefault());
    updateParameter(spvdao, spv);
    spv.setParameter("interviewerNameEditable");
    spv.setValue(study1.getStudyParameterConfig().getInterviewerNameEditable());
    updateParameter(spvdao, spv);
    spv.setParameter("interviewDateRequired");
    spv.setValue(study1.getStudyParameterConfig().getInterviewDateRequired());
    updateParameter(spvdao, spv);
    spv.setParameter("interviewDateDefault");
    spv.setValue(study1.getStudyParameterConfig().getInterviewDateDefault());
    updateParameter(spvdao, spv);
    spv.setParameter("interviewDateEditable");
    spv.setValue(study1.getStudyParameterConfig().getInterviewDateEditable());
    updateParameter(spvdao, spv);
    spv.setParameter("subjectIdGeneration");
    spv.setValue(study1.getStudyParameterConfig().getSubjectIdGeneration());
    updateParameter(spvdao, spv);
    spv.setParameter("subjectIdPrefixSuffix");
    spv.setValue(study1.getStudyParameterConfig().getSubjectIdPrefixSuffix());
    updateParameter(spvdao, spv);
    spv.setParameter("personIdShownOnCRF");
    spv.setValue(study1.getStudyParameterConfig().getPersonIdShownOnCRF());
    updateParameter(spvdao, spv);
    StudyBean curStudy = (StudyBean) session.getAttribute("study");
    if (curStudy != null && study1.getId() == curStudy.getId()) {
        super.currentStudy = study1;
        session.setAttribute("study", study1);
    }
    // update manage_pedigrees for all sites
    ArrayList children = (ArrayList) sdao.findAllByParent(study1.getId());
    for (int i = 0; i < children.size(); i++) {
        StudyBean child = (StudyBean) children.get(i);
        // same as parent's type
        child.setType(study1.getType());
        child.setUpdatedDate(new Date());
        child.setUpdater(ub);
        sdao.update(child);
        // YW << update "collectDob" and "genderRequired" for sites
        StudyParameterValueBean childspv = new StudyParameterValueBean();
        childspv.setStudyId(child.getId());
        childspv.setParameter("collectDob");
        childspv.setValue(new Integer(study1.getStudyParameterConfig().getCollectDob()).toString());
        updateParameter(spvdao, childspv);
        childspv.setParameter("genderRequired");
        childspv.setValue(study1.getStudyParameterConfig().getGenderRequired());
        updateParameter(spvdao, childspv);
    // YW >>
    }
    session.removeAttribute("newStudy");
    session.removeAttribute("interventions");
}

Example 45 with StudyParameterValueBean

use of org.akaza.openclinica.bean.service.StudyParameterValueBean in project OpenClinica by OpenClinica.

the class SubjectTransferValidator method validate.

@Override
public void validate(Object obj, Errors e) {
    SubjectTransferBean subjectTransferBean = (SubjectTransferBean) obj;
    if (subjectTransferBean.getStudyOid() == null) {
        e.reject("studyEventTransferValidator.study_does_not_exist");
        return;
    }
    Status[] included_status = new Status[] { Status.AVAILABLE };
    StudyBean study = helper.verifyStudy(getStudyDAO(), subjectTransferBean.getStudyOid(), included_status, e);
    if (study == null)
        return;
    StudyBean site = null;
    int site_id = -1;
    subjectTransferBean.setStudy(study);
    if (subjectTransferBean.getSiteIdentifier() != null) {
        site = helper.verifySite(getStudyDAO(), subjectTransferBean.getStudyOid(), subjectTransferBean.getSiteIdentifier(), included_status, e);
        if (site == null) {
            return;
        }
        site_id = site.getId();
        subjectTransferBean.setStudy(site);
    }
    boolean isRoleVerified = helper.verifyRole(subjectTransferBean.getOwner(), study.getId(), site_id, Role.MONITOR, e);
    if (!isRoleVerified) {
        return;
    }
    //        StudyBean study = null;
    //        if ( subjectTransferBean.getStudyOid() != null)
    //        {
    //	        study = getStudyDAO().findByUniqueIdentifier(subjectTransferBean.getStudyOid());
    //	        if (study == null) {
    //	            e.reject("subjectTransferValidator.study_does_not_exist", new Object[] { subjectTransferBean.getStudyOid() }, "Study identifier you specified "
    //	                + subjectTransferBean.getStudyOid() + " does not correspond to a valid study.");
    //	            return;
    //	        }
    //	        //validate study status
    //	        if (study != null && !study.getStatus().isAvailable()) {
    //	            e.reject("subjectTransferValidator.study_status_wrong", new Object[] { subjectTransferBean.getStudyOid() }, "Study "
    //	            		+ subjectTransferBean.getStudyOid() +" has wrong status. Subject can be added to an 'AVAILABLE' study only.");
    //	            return;
    //	        }
    //	        subjectTransferBean.setStudy(study);
    //        }
    //        UserAccountBean ua = subjectTransferBean.getOwner();
    //        StudyUserRoleBean role = ua.getRoleByStudy(subjectTransferBean.getStudy());
    //        if (role.getId() == 0 || role.getRole().equals(Role.MONITOR)) {
    //            e.reject("subjectTransferValidator.insufficient_permissions", "You do not have sufficient privileges to proceed with this operation.");
    //            return;
    //        }
    //        StudyBean site = null;
    //        if (subjectTransferBean.getSiteIdentifier() != null) {
    //            site = getStudyDAO().findSiteByUniqueIdentifier(subjectTransferBean.getStudyOid(), subjectTransferBean.getSiteIdentifier());
    // 	        if (site == null) {
    //	            e.reject("subjectTransferValidator.site_does_not_exist", new Object[] { subjectTransferBean.getSiteIdentifier() },
    //	                    "Site identifier you specified does not correspond to a valid site.");
    //	            return;
    //	        }
    //	        //validate site status
    //	        if ( ! site.getStatus().isAvailable()) {
    //	        
    //	            e.reject("subjectTransferValidator.site_status_wrong", new Object[] { subjectTransferBean.getSiteIdentifier() }, "Site "
    //	            		+ site.getName() +" has wrong status. Subject can be added to an 'AVAILABLE' site only.");
    //	            return;
    //	        }
    //	        subjectTransferBean.setStudy(site);//???????????
    //        }
    //        role = ua.getRoleByStudy(site);
    //        if (role.getId() == 0 || role.getRole().equals(Role.MONITOR)) {
    //            e.reject("subjectTransferValidator.insufficient_permissions", "You do not have sufficient privileges to proceed with this operation.");
    //            return;
    //        }
    //      
    int handleStudyId = study.getParentStudyId() > 0 ? study.getParentStudyId() : study.getId();
    StudyParameterValueBean studyParameter = getStudyParameterValueDAO().findByHandleAndStudy(handleStudyId, "subjectPersonIdRequired");
    String personId = subjectTransferBean.getPersonId();
    if (personId.contains("<") || personId.contains(">")) {
        e.reject("subjectTransferValidator.person_id_can_not_contain_html_lessthan_or_greaterthan_elements");
        return;
    }
    if ("required".equals(studyParameter.getValue()) && (personId == null || personId.length() < 1)) {
        e.reject("subjectTransferValidator.personId_required", new Object[] { study.getName() }, "personId is required for the study: " + study.getName());
        return;
    }
    if ("not used".equals(studyParameter.getValue()) && !(personId == null || personId.length() < 1)) {
        e.reject("subjectTransferValidator.personId_not_used", new Object[] { study.getName() }, "personId is not used for the study: " + study.getName());
        return;
    }
    if (personId != null && personId.length() > 255) {
        e.reject("subjectTransferValidator.personId_invalid_length", new Object[] { personId }, "personId: " + personId + " cannot be longer than 255 characters.");
        return;
    }
    // verify that personId is unique 
    if (subjectTransferBean.getPersonId() != null && subjectTransferBean.getPersonId().length() > 0) {
        //	         SubjectBean subjectWithSamePersonId = getSubjectDao().findByUniqueIdentifierAndStudy( subjectTransferBean.getPersonId(), study.getId());
        SubjectBean subjectWithSamePersonId = getSubjectDao().findByUniqueIdentifierAndAnyStudy(subjectTransferBean.getPersonId(), study.getId());
        if (subjectWithSamePersonId.getId() != 0) {
            e.reject("subjectTransferValidator.personId_duplicated", new Object[] { personId }, "A subject with the Person ID: " + personId + " is already enrolled in this study. ");
            return;
        }
    }
    StudyParameterValueBean subjectIdGenerationParameter = getStudyParameterValueDAO().findByHandleAndStudy(handleStudyId, "subjectIdGeneration");
    String idSetting = subjectIdGenerationParameter.getValue();
    if (!(idSetting.equals("auto editable") || idSetting.equals("auto non-editable"))) {
        String studySubjectId = subjectTransferBean.getStudySubjectId();
        if (studySubjectId == null || studySubjectId.length() < 1) {
            e.reject("subjectTransferValidator.studySubjectId_required");
            return;
        } else if (studySubjectId.length() > 30) {
            e.reject("subjectTransferValidator.studySubjectId_invalid_length", new Object[] { studySubjectId }, "studySubjectId: " + studySubjectId + " cannot be longer than 30 characters.");
            return;
        } else {
            // checks whether there is a subject with same id inside current study
            StudySubjectBean subjectWithSame = getStudySubjectDAO().findByLabelAndStudy(studySubjectId, study);
            if (subjectWithSame.getLabel().equals(studySubjectId)) {
                e.reject("subjectTransferValidator.subject_duplicated_label", new Object[] { studySubjectId, study.getIdentifier() }, "studySubjectId: " + studySubjectId + " already exists for " + study.getIdentifier() + " study .");
                return;
            }
        }
        if (studySubjectId.contains("<") || studySubjectId.contains(">")) {
            e.reject("subjectTransferValidator.study_subject_id_can_not_contain_html_lessthan_or_greaterthan_elements");
            return;
        }
    }
    String secondaryId = subjectTransferBean.getSecondaryId();
    if (secondaryId != null && secondaryId.length() > 30) {
        e.reject("subjectTransferValidator.secondaryId_invalid_length", new Object[] { secondaryId }, "secondaryId: " + secondaryId + " cannot be longer than 30 characters.");
        return;
    }
    if (secondaryId.contains("<") || secondaryId.contains(">")) {
        e.reject("subjectTransferValidator.secondary_id_can_not_contain_html_lessthan_or_greaterthan_elements");
        return;
    }
    String gender = String.valueOf(subjectTransferBean.getGender());
    studyParameter = getStudyParameterValueDAO().findByHandleAndStudy(handleStudyId, "genderRequired");
    if ("true".equals(studyParameter.getValue())) {
        if (gender == null || gender.length() < 1) {
            e.reject("subjectTransferValidator.gender_required", new Object[] { study.getName() }, "Gender is required for the study: " + study.getName());
            return;
        }
        if (!"m".equals(gender) && !"f".equals(gender)) {
            e.reject("subjectTransferValidator.gender_is_m_or_f");
            return;
        }
    } else {
        if (gender.trim().length() > 0 && !("m".equals(gender) || "f".equals(gender))) {
            e.reject("subjectTransferValidator.gender_is_m_or_f");
            return;
        }
    }
    Date dateOfBirth = subjectTransferBean.getDateOfBirth();
    String yearOfBirth = subjectTransferBean.getYearOfBirth();
    studyParameter = getStudyParameterValueDAO().findByHandleAndStudy(handleStudyId, "collectDob");
    if ("1".equals(studyParameter.getValue()) && (dateOfBirth == null)) {
        e.reject("subjectTransferValidator.dateOfBirth_required", new Object[] { study.getName() }, "Date of birth is required for the study " + study.getName());
        return;
    } else if ("2".equals(studyParameter.getValue()) && (yearOfBirth == null)) {
        e.reject("subjectTransferValidator.yearOfBirth_required", new Object[] { study.getName() }, "Year of birth is required for the study " + study.getName());
        return;
    } else if ("2".equals(studyParameter.getValue()) && (yearOfBirth != null)) {
        try {
            SimpleDateFormat sdf = new SimpleDateFormat("yyyy");
            subjectTransferBean.setDateOfBirth(sdf.parse(subjectTransferBean.getYearOfBirth()));
        } catch (ParseException xe) {
            e.reject("subjectTransferValidator.yearOfBirth_invalid", new Object[] { yearOfBirth }, "Year of birth: " + yearOfBirth + " is not valid");
            return;
        }
    //not used
    } else if ("3".equals(studyParameter.getValue())) {
        if (dateOfBirth != null || !(yearOfBirth == null || yearOfBirth.length() < 1)) {
            e.reject("subjectTransferValidator.date_of_birth_notused", new Object[] { study.getName() }, "Date of Birth is not used for the study " + study.getName());
            return;
        }
    }
    Date enrollmentDate = subjectTransferBean.getEnrollmentDate();
    if (enrollmentDate == null) {
        e.reject("subjectTransferValidator.enrollmentDate_required");
        return;
    } else {
        if ((new Date()).compareTo(enrollmentDate) < 0) {
            e.reject("subjectTransferValidator.enrollmentDate_should_be_in_past");
            return;
        }
    }
}