Examples with EventCRFBean org.akaza.openclinica.bean.submit.EventCRFBean used on opensource projects

Example 16 with EventCRFBean

use of org.akaza.openclinica.bean.submit.EventCRFBean in project OpenClinica by OpenClinica.

the class RuleRunner method prepareEmailContents.

HashMap<String, String> prepareEmailContents(RuleSetBean ruleSet, RuleSetRuleBean ruleSetRule, StudyBean currentStudy, RuleActionBean ruleAction) {
    // get the Study Event
    StudyEventBean studyEvent = (StudyEventBean) getStudyEventDao().findByPK(Integer.valueOf(getExpressionService().getStudyEventDefenitionOrdninalCurated(ruleSet.getTarget().getValue())));
    // get the Study Subject
    StudySubjectBean studySubject = (StudySubjectBean) getStudySubjectDao().findByPK(studyEvent.getStudySubjectId());
    // get Study/Site Associated with Subject
    StudyBean theStudy = (StudyBean) getStudyDao().findByPK(studySubject.getStudyId());
    String theStudyName, theSiteName = "";
    if (theStudy.getParentStudyId() > 0) {
        StudyBean theParentStudy = (StudyBean) getStudyDao().findByPK(theStudy.getParentStudyId());
        theStudyName = theParentStudy.getName() + " / " + theParentStudy.getIdentifier();
        theSiteName = theStudy.getName() + " / " + theStudy.getIdentifier();
    } else {
        theStudyName = theStudy.getName() + " / " + theStudy.getIdentifier();
    }
    // get the eventCrf & subsequently the CRF Version
    //EventCRFBean eventCrf = (EventCRFBean) getEventCrfDao().findAllByStudyEvent(studyEvent).get(0);
    EventCRFBean eventCrf = (EventCRFBean) getEventCrfDao().findAllByStudyEventAndCrfOrCrfVersionOid(studyEvent, getExpressionService().getCrfOid(ruleSet.getTarget().getValue())).get(0);
    CRFVersionBean crfVersion = (CRFVersionBean) getCrfVersionDao().findByPK(eventCrf.getCRFVersionId());
    CRFBean crf = (CRFBean) getCrfDao().findByPK(crfVersion.getCrfId());
    String studyEventDefinitionName = getExpressionService().getStudyEventDefinitionFromExpression(ruleSet.getTarget().getValue(), currentStudy).getName();
    studyEventDefinitionName += " [" + studyEvent.getSampleOrdinal() + "]";
    String itemGroupName = getExpressionService().getItemGroupNameAndOrdinal(ruleSet.getTarget().getValue());
    ItemGroupBean itemGroupBean = getExpressionService().getItemGroupExpression(ruleSet.getTarget().getValue());
    ItemBean itemBean = getExpressionService().getItemExpression(ruleSet.getTarget().getValue(), itemGroupBean);
    String itemName = itemBean.getName();
    SectionBean section = (SectionBean) getSectionDAO().findByPK(getItemFormMetadataDAO().findByItemIdAndCRFVersionId(itemBean.getId(), crfVersion.getId()).getSectionId());
    StringBuffer sb = new StringBuffer();
    ResourceBundle respage = ResourceBundleProvider.getPageMessagesBundle();
    sb.append(respage.getString("email_header_1"));
    sb.append(" " + contextPath + " ");
    sb.append(respage.getString("email_header_2"));
    sb.append(" '" + currentStudy.getName() + "' ");
    sb.append(respage.getString("email_header_3"));
    sb.append(" \n\n ");
    sb.append(respage.getString("email_body_1") + " " + theStudyName + " \n ");
    sb.append(respage.getString("email_body_1_a") + " " + theSiteName + " \n ");
    sb.append(respage.getString("email_body_2") + " " + studySubject.getName() + " \n ");
    sb.append(respage.getString("email_body_3") + " " + studyEventDefinitionName + " \n ");
    sb.append(respage.getString("email_body_4") + " " + crf.getName() + " " + crfVersion.getName() + " \n ");
    sb.append(respage.getString("email_body_5") + " " + section.getTitle() + " \n ");
    sb.append(respage.getString("email_body_6") + " " + itemGroupName + " \n ");
    sb.append(respage.getString("email_body_7") + " " + itemName + " \n ");
    sb.append(respage.getString("email_body_8") + " " + ruleAction.getCuratedMessage() + " \n ");
    sb.append(" \n\n ");
    sb.append(respage.getString("email_body_9"));
    sb.append(" " + contextPath + " ");
    sb.append(respage.getString("email_body_10"));
    sb.append(" \n");
    requestURLMinusServletPath = requestURLMinusServletPath == null ? "" : requestURLMinusServletPath;
    sb.append(requestURLMinusServletPath + "/ViewSectionDataEntry?ecId=" + eventCrf.getId() + "&sectionId=" + section.getId() + "&tabId=" + section.getOrdinal());
    // &eventId="+ studyEvent.getId());
    sb.append("\n\n");
    sb.append(respage.getString("email_footer"));
    String subject = contextPath + " - [" + currentStudy.getName() + "] ";
    String ruleSummary = ruleAction.getSummary() != null ? ruleAction.getSummary() : "";
    String message = ruleSummary.length() < 20 ? ruleSummary : ruleSummary.substring(0, 20) + " ... ";
    subject += message;
    HashMap<String, String> emailContents = new HashMap<String, String>();
    emailContents.put("body", sb.toString());
    emailContents.put("subject", subject);
    return emailContents;
}

Example 17 with EventCRFBean

use of org.akaza.openclinica.bean.submit.EventCRFBean in project OpenClinica by OpenClinica.

the class DiscrepancyNoteUtil method injectDiscNotesIntoDisplayStudyEvents.

/**
     * This method is an overloaded version of the previous method, with the
     * only difference being the resolutionStatusIds parameter in this method.
     * This method adds the associated discrepancy notes to the appropriate
     * StudyEventBean (contained by DisplayStudyBeans).
     *
     * @param displayStudyBeans
     *            A List of DisplayStudyEventBeans.
     * @param resolutionStatusIds
     *            A HashSet object consisting of resolution status ids (i.e.,
     *            1,2,3).
     * @param dataSource
     *            A DataSource object, for use with the DAO methods.
     * @param discNoteType
     *            An int discrepancy note type, for filtering the discrepancy
     *            notes that
     * @param discrepancyNoteThreads
     *            A List of DiscrepancyNoteThreads
     */
public void injectDiscNotesIntoDisplayStudyEvents(List<DisplayStudyEventBean> displayStudyBeans, Set<Integer> resolutionStatusIds, DataSource dataSource, int discNoteType, List<DiscrepancyNoteThread> discrepancyNoteThreads) {
    if (displayStudyBeans == null) {
        return;
    }
    // booleans representing whether this method should only get
    // DiscrepancyNoteBeans with
    // certain resolution status or discrepancyNoteTypeId number.
    boolean hasResolutionStatus = this.checkResolutionStatus(resolutionStatusIds);
    boolean hasDiscNoteType = discNoteType >= 1 && discNoteType <= 4;
    EventCRFDAO eventCRFDAO = new EventCRFDAO(dataSource);
    DiscrepancyNoteDAO discrepancyNoteDAO = new DiscrepancyNoteDAO(dataSource);
    StudyEventBean studyEventBean;
    List<EventCRFBean> eventCRFBeans = new ArrayList<EventCRFBean>();
    List<DiscrepancyNoteBean> foundDiscNotes = new ArrayList<DiscrepancyNoteBean>();
    for (DisplayStudyEventBean dStudyEventBean : displayStudyBeans) {
        studyEventBean = dStudyEventBean.getStudyEvent();
        // All EventCRFs for a study event
        eventCRFBeans = eventCRFDAO.findAllByStudyEvent(studyEventBean);
        for (EventCRFBean eventCrfBean : eventCRFBeans) {
            // Find ItemData type notes associated with an event crf
            foundDiscNotes = discrepancyNoteDAO.findItemDataDNotesFromEventCRF(eventCrfBean);
            // return only parent beans
            foundDiscNotes = filterDiscNotesForOnlyParents(foundDiscNotes, discrepancyNoteThreads);
            // update the resolution status of these parent discrepancy
            // notes
            updateStatusUsingThread(foundDiscNotes, discrepancyNoteThreads);
            // filter for any specified disc note type
            if (!foundDiscNotes.isEmpty() && hasDiscNoteType) {
                // only include disc notes that have the specified disc note
                // type id
                foundDiscNotes = filterforDiscNoteType(foundDiscNotes, discNoteType);
            }
            if (!foundDiscNotes.isEmpty()) {
                if (!hasResolutionStatus) {
                    studyEventBean.getDiscBeanList().addAll(foundDiscNotes);
                } else {
                    // session variable
                    for (DiscrepancyNoteBean discBean : foundDiscNotes) {
                        for (int statusId : resolutionStatusIds) {
                            if (discBean.getResolutionStatusId() == statusId) {
                                studyEventBean.getDiscBeanList().add(discBean);
                            }
                        }
                    }
                }
            }
        // 3014: Not for now; Find EventCRF type notes
        /*
                 * foundDiscNotes =
                 * discrepancyNoteDAO.findEventCRFDNotesFromEventCRF(eventCrfBean);
                 * //filter for any specified disc note type if((!
                 * foundDiscNotes.isEmpty()) && hasDiscNoteType){ foundDiscNotes =
                 * filterforDiscNoteType(foundDiscNotes,discNoteType); }
                 *
                 * if(! foundDiscNotes.isEmpty()){ if(! hasResolutionStatus) {
                 * studyEventBean.getDiscBeanList().addAll(foundDiscNotes); }
                 * else { //Only include disc notes with a particular resolution
                 * status, specified by //the parameter passed to the servlet
                 * for(DiscrepancyNoteBean discBean : foundDiscNotes) { for(int
                 * statusId : resolutionStatusIds){
                 * if(discBean.getResolutionStatusId() == statusId){
                 * studyEventBean.getDiscBeanList().add(discBean); } } } } }
                 */
        // end if(! foundDiscNotes.isEmpty()){
        }
    // end for(EventCRFBean...
    }
// end for (DisplayStudyEventBean
}

Example 18 with EventCRFBean

use of org.akaza.openclinica.bean.submit.EventCRFBean in project OpenClinica by OpenClinica.

the class DiscrepancyNoteUtil method getEventCRFIdsFromDisplayEvents.

private SortedSet<Integer> getEventCRFIdsFromDisplayEvents(List<DisplayStudyEventBean> displayEvents) {
    SortedSet<Integer> treeSet = new TreeSet<Integer>();
    if (displayEvents == null || displayEvents.isEmpty()) {
        return treeSet;
    }
    StudyEventBean studyEventBean = null;
    List<DisplayEventCRFBean> displayEventCRFBeans = null;
    List<EventCRFBean> eventCRFBeans = null;
    for (DisplayStudyEventBean displayStudyEventBean : displayEvents) {
        displayEventCRFBeans = displayStudyEventBean.getDisplayEventCRFs();
        if (displayEventCRFBeans.isEmpty()) {
            eventCRFBeans = displayStudyEventBean.getStudyEvent().getEventCRFs();
            for (EventCRFBean evBean : eventCRFBeans) {
                treeSet.add(evBean.getId());
            }
            // move on to the next DisplayStudyEventBean
            continue;
        }
        for (DisplayEventCRFBean disBean : displayEventCRFBeans) {
            treeSet.add(disBean.getEventCRF().getId());
        }
    }
    return treeSet;
}

Example 19 with EventCRFBean

use of org.akaza.openclinica.bean.submit.EventCRFBean in project OpenClinica by OpenClinica.

the class DiscrepancyNoteUtil method injectDiscNotesIntoDisplayStudyEvents.

/**
     * Add associated discrepancy notes to the appropriate StudyEventBean
     * (contained by DisplayStudyBeans). A StudyEventBean has a List of
     * DiscrepancyNoteBeans.
     *
     * @param displayStudyBeans
     *            A List of DisplayStudyEventBeans
     * @param resolutionStatus
     *            An int representing the resolution status, if we are filtering
     *            the DiscrepancyNoteBeans based on their resolutionStatus id
     *            number.
     * @param dataSource
     *            A DataSource used for the DAO methods.
     * @param discNoteType
     *            An int representing the discrepancy note type, if we are
     *            filtering the DiscrepancyNoteBeans based on their
     *            discrepancyNoteTypeId number.
     */
public void injectDiscNotesIntoDisplayStudyEvents(List<DisplayStudyEventBean> displayStudyBeans, int resolutionStatus, DataSource dataSource, int discNoteType) {
    if (displayStudyBeans == null) {
        return;
    }
    // booleans representing whether this method should only get
    // DiscrepancyNoteBeans with
    // certain resolution status or discrepancyNoteTypeId number.
    boolean hasResolutionStatus = resolutionStatus >= 1 && resolutionStatus <= 5;
    boolean hasDiscNoteType = discNoteType >= 1 && discNoteType <= 4;
    EventCRFDAO eventCRFDAO = new EventCRFDAO(dataSource);
    DiscrepancyNoteDAO discrepancyNoteDAO = new DiscrepancyNoteDAO(dataSource);
    StudyEventBean studyEventBean;
    List<EventCRFBean> eventCRFBeans = new ArrayList<EventCRFBean>();
    List<DiscrepancyNoteBean> foundDiscNotes = new ArrayList<DiscrepancyNoteBean>();
    for (DisplayStudyEventBean dStudyEventBean : displayStudyBeans) {
        studyEventBean = dStudyEventBean.getStudyEvent();
        // All EventCRFs for a study event
        eventCRFBeans = eventCRFDAO.findAllByStudyEvent(studyEventBean);
        for (EventCRFBean eventCrfBean : eventCRFBeans) {
            // Find ItemData type notes associated iwth an event crf
            foundDiscNotes = discrepancyNoteDAO.findItemDataDNotesFromEventCRF(eventCrfBean);
            // filter for any specified disc note type
            if (!foundDiscNotes.isEmpty() && hasDiscNoteType) {
                // only include disc notes that have the specified disc note
                // type id
                foundDiscNotes = filterforDiscNoteType(foundDiscNotes, discNoteType);
            }
            if (!foundDiscNotes.isEmpty()) {
                if (!hasResolutionStatus) {
                    studyEventBean.getDiscBeanList().addAll(foundDiscNotes);
                } else {
                    // the parameter passed to the servlet
                    for (DiscrepancyNoteBean discBean : foundDiscNotes) {
                        if (discBean.getResolutionStatusId() == resolutionStatus) {
                            studyEventBean.getDiscBeanList().add(discBean);
                        }
                    }
                }
            }
            // Find EventCRF type notes
            foundDiscNotes = discrepancyNoteDAO.findEventCRFDNotesFromEventCRF(eventCrfBean);
            // filter for any specified disc note type
            if (!foundDiscNotes.isEmpty() && hasDiscNoteType) {
                foundDiscNotes = filterforDiscNoteType(foundDiscNotes, discNoteType);
            }
            if (!foundDiscNotes.isEmpty()) {
                if (!hasResolutionStatus) {
                    studyEventBean.getDiscBeanList().addAll(foundDiscNotes);
                } else {
                    // the parameter passed to the servlet
                    for (DiscrepancyNoteBean discBean : foundDiscNotes) {
                        if (discBean.getResolutionStatusId() == resolutionStatus) {
                            studyEventBean.getDiscBeanList().add(discBean);
                        }
                    }
                }
            }
        // end if(! foundDiscNotes.isEmpty()){
        }
    // end for(EventCRFBean...
    }
// end for (DisplayStudyEventBean
}

Example 20 with EventCRFBean

use of org.akaza.openclinica.bean.submit.EventCRFBean in project OpenClinica by OpenClinica.

the class DynamicsMetadataService method show.

public void show(Integer itemDataId, List<PropertyBean> properties, RuleSetBean ruleSet) {
    ItemDataBean itemDataBeanA = (ItemDataBean) getItemDataDAO().findByPK(itemDataId);
    EventCRFBean eventCrfBeanA = (EventCRFBean) getEventCRFDAO().findByPK(itemDataBeanA.getEventCRFId());
    StudyEventBean studyEventBeanA = (StudyEventBean) getStudyEventDAO().findByPK(eventCrfBeanA.getStudyEventId());
    ItemGroupMetadataBean itemGroupMetadataBeanA = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemDataBeanA.getItemId(), eventCrfBeanA.getCRFVersionId());
    Boolean isGroupARepeating = isGroupRepeating(itemGroupMetadataBeanA);
    String itemGroupAOrdinal = getExpressionService().getGroupOrdninalCurated(ruleSet.getTarget().getValue());
    for (PropertyBean propertyBean : properties) {
        String oid = propertyBean.getOid();
        ItemOrItemGroupHolder itemOrItemGroup = getItemOrItemGroup(oid);
        // OID is an item
        if (itemOrItemGroup.getItemBean() != null) {
            ItemDataBean oidBasedItemData = getItemData(itemOrItemGroup.getItemBean(), eventCrfBeanA, itemDataBeanA.getOrdinal());
            ItemFormMetadataBean itemFormMetadataBean = getItemFormMetadataDAO().findByItemIdAndCRFVersionId(itemOrItemGroup.getItemBean().getId(), eventCrfBeanA.getCRFVersionId());
            DynamicsItemFormMetadataBean dynamicsMetadataBean = getDynamicsItemFormMetadataBean(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
            if (dynamicsMetadataBean == null) {
                showItem(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
            } else if (dynamicsMetadataBean != null && !dynamicsMetadataBean.isShowItem()) {
                dynamicsMetadataBean.setShowItem(true);
                getDynamicsItemFormMetadataDao().saveOrUpdate(dynamicsMetadataBean);
            }
        } else // OID is a group
        {
            logger.debug("found item group id 1 " + oid);
            ItemGroupBean itemGroupBean = itemOrItemGroup.getItemGroupBean();
            ArrayList sectionBeans = getSectionDAO().findAllByCRFVersionId(eventCrfBeanA.getCRFVersionId());
            for (int i = 0; i < sectionBeans.size(); i++) {
                SectionBean sectionBean = (SectionBean) sectionBeans.get(i);
                // System.out.println("found section " + sectionBean.getId());
                List<ItemGroupMetadataBean> itemGroupMetadataBeans = getItemGroupMetadataDAO().findMetaByGroupAndSection(itemGroupBean.getId(), eventCrfBeanA.getCRFVersionId(), sectionBean.getId());
                for (ItemGroupMetadataBean itemGroupMetadataBean : itemGroupMetadataBeans) {
                    if (itemGroupMetadataBean.getItemGroupId() == itemGroupBean.getId()) {
                        // System.out.println("found item group id 2 " + oid);
                        DynamicsItemGroupMetadataBean dynamicsGroupBean = getDynamicsItemGroupMetadataBean(itemGroupMetadataBean, eventCrfBeanA);
                        if (dynamicsGroupBean == null) {
                            showGroup(itemGroupMetadataBean, eventCrfBeanA);
                        } else if (dynamicsGroupBean != null && !dynamicsGroupBean.isShowGroup()) {
                            dynamicsGroupBean.setShowGroup(true);
                            getDynamicsItemGroupMetadataDao().saveOrUpdate(dynamicsGroupBean);
                        }
                    }
                }
            }
        }
    }
}