Examples with FormLayoutBean org.akaza.openclinica.bean.submit.FormLayoutBean used on opensource projects

Example 31 with FormLayoutBean

use of org.akaza.openclinica.bean.submit.FormLayoutBean in project OpenClinica by OpenClinica.

the class FormLayoutDAO method create.

public EntityBean create(EntityBean eb) {
    // "INSERT INTO CRF_VERSION (NAME, DESCRIPTION, CRF_ID, STATUS_ID,DATE_CREATED," +
    // "OWNER_ID,REVISION_NOTES,OC_OID) "
    // + "VALUES ('" + stripQuotes(version) + "','" + stripQuotes(versionDesc) + "'," +
    // "(SELECT CRF_ID FROM CRF WHERE NAME='"
    // + crfName + "'),1,NOW()," + ub.getId() + ",'" + stripQuotes(revisionNotes) + "','" + oid + "')";
    // <sql>INSERT INTO CRF_VERSION (CRF_ID, STATUS_ID, NAME,
    // DESCRIPTION, OWNER_ID,
    // DATE_CREATED, REVISION_NOTES)
    // VALUES (?,?,?,?,?,NOW(),?)</sql>
    FormLayoutBean cvb = (FormLayoutBean) eb;
    HashMap variables = new HashMap();
    // variables.put(Integer.valueOf(2), cb.getLabel());
    variables.put(Integer.valueOf(1), Integer.valueOf(cvb.getCrfId()));
    variables.put(Integer.valueOf(2), Integer.valueOf(cvb.getStatus().getId()));
    variables.put(Integer.valueOf(3), cvb.getName());
    variables.put(Integer.valueOf(4), cvb.getDescription());
    variables.put(Integer.valueOf(5), Integer.valueOf(cvb.getOwner().getId()));
    variables.put(Integer.valueOf(6), cvb.getRevisionNotes());
    variables.put(Integer.valueOf(7), getValidOid(cvb, cvb.getName(), cvb.getOid()));
    variables.put(Integer.valueOf(8), cvb.getXform());
    variables.put(Integer.valueOf(9), cvb.getXformName());
    variables.put(Integer.valueOf(10), cvb.getUrl());
    // am i the only one who runs their daos' unit tests after I change
    // things, tbh?
    this.execute(digester.getQuery("create"), variables);
    if (isQuerySuccessful()) {
        cvb.setActive(true);
    }
    return cvb;
}

Example 32 with FormLayoutBean

use of org.akaza.openclinica.bean.submit.FormLayoutBean in project OpenClinica by OpenClinica.

the class StudySubjectServiceImpl method getDisplayStudyEventsForStudySubject.

@Override
@SuppressWarnings({ "unchecked", "rawtypes" })
public List<DisplayStudyEventBean> getDisplayStudyEventsForStudySubject(StudySubjectBean studySubject, UserAccountBean userAccount, StudyUserRoleBean currentRole) {
    StudyEventDAO studyEventDao = new StudyEventDAO(dataSource);
    StudyEventDefinitionDAO studyEventDefinitionDao = new StudyEventDefinitionDAO(dataSource);
    StudyDAO studyDao = new StudyDAO(dataSource);
    EventDefinitionCRFDAO eventDefinitionCrfDao = new EventDefinitionCRFDAO(dataSource);
    EventCRFDAO eventCrfDao = new EventCRFDAO(dataSource);
    CRFDAO crfDao = new CRFDAO(dataSource);
    FormLayoutDAO formLayoutDAO = new FormLayoutDAO(dataSource);
    ArrayList events = studyEventDao.findAllByStudySubject(studySubject);
    Map<Integer, StudyEventDefinitionBean> eventDefinitionByEvent = studyEventDefinitionDao.findByStudySubject(studySubject.getId());
    StudyBean study = (StudyBean) studyDao.findByPK(studySubject.getStudyId());
    Map<Integer, SortedSet<EventDefinitionCRFBean>> eventDefinitionCrfByStudyEventDefinition;
    if (study.getParentStudyId() < 1) {
        // Is a study
        eventDefinitionCrfByStudyEventDefinition = eventDefinitionCrfDao.buildEventDefinitionCRFListByStudyEventDefinitionForStudy(studySubject.getId());
    } else {
        // Is a site
        eventDefinitionCrfByStudyEventDefinition = eventDefinitionCrfDao.buildEventDefinitionCRFListByStudyEventDefinition(studySubject.getId(), study.getId(), study.getParentStudyId());
    }
    Map<Integer, SortedSet<EventCRFBean>> eventCrfListByStudyEvent = eventCrfDao.buildEventCrfListByStudyEvent(studySubject.getId());
    Map<Integer, Integer> maxOrdinalByStudyEvent = studyEventDefinitionDao.buildMaxOrdinalByStudyEvent(studySubject.getId());
    Set<Integer> nonEmptyEventCrf = eventCrfDao.buildNonEmptyEventCrfIds(studySubject.getId());
    Map<Integer, FormLayoutBean> formLayoutById = formLayoutDAO.buildFormLayoutById(studySubject.getId());
    Map<Integer, CRFBean> crfById = crfDao.buildCrfById(studySubject.getId());
    ArrayList<DisplayStudyEventBean> displayEvents = new ArrayList<DisplayStudyEventBean>();
    for (int i = 0; i < events.size(); i++) {
        StudyEventBean event = (StudyEventBean) events.get(i);
        StudyEventDefinitionBean sed = eventDefinitionByEvent.get(event.getStudyEventDefinitionId());
        event.setStudyEventDefinition(sed);
        List eventDefinitionCRFs = new ArrayList((eventDefinitionCrfByStudyEventDefinition.containsKey(sed.getId()) ? eventDefinitionCrfByStudyEventDefinition.get(sed.getId()) : Collections.EMPTY_LIST));
        List eventCRFs = new ArrayList((eventCrfListByStudyEvent.containsKey(event.getId())) ? eventCrfListByStudyEvent.get(event.getId()) : Collections.EMPTY_LIST);
        // construct info needed on view study event page
        DisplayStudyEventBean de = new DisplayStudyEventBean();
        de.setStudyEvent(event);
        de.setDisplayEventCRFs((ArrayList<DisplayEventCRFBean>) getDisplayEventCRFs(eventCRFs, userAccount, currentRole, event.getSubjectEventStatus(), study, nonEmptyEventCrf, formLayoutById, crfById, event.getStudyEventDefinitionId(), eventDefinitionCRFs));
        ArrayList<DisplayEventDefinitionCRFBean> al = getUncompletedCRFs(eventDefinitionCRFs, eventCRFs, event.getSubjectEventStatus(), nonEmptyEventCrf, formLayoutById, crfById);
        populateUncompletedCRFsWithCRFAndVersions(al, formLayoutById, crfById);
        de.setUncompletedCRFs(al);
        // de.setMaximumSampleOrdinal(studyEventDao.getMaxSampleOrdinal(sed,
        // studySubject));
        de.setMaximumSampleOrdinal(maxOrdinalByStudyEvent.get(event.getStudyEventDefinitionId()));
        displayEvents.add(de);
    // event.setEventCRFs(createAllEventCRFs(eventCRFs,
    // eventDefinitionCRFs));
    }
    return displayEvents;
}

Example 33 with FormLayoutBean

use of org.akaza.openclinica.bean.submit.FormLayoutBean in project OpenClinica by OpenClinica.

the class StudySubjectServiceImpl method getDisplayEventCRFs.

private List<DisplayEventCRFBean> getDisplayEventCRFs(List eventCRFs, UserAccountBean ub, StudyUserRoleBean currentRole, SubjectEventStatus status, StudyBean study, Set<Integer> nonEmptyEventCrf, Map<Integer, FormLayoutBean> formLayoutById, Map<Integer, CRFBean> crfById, Integer studyEventDefinitionId, List eventDefinitionCRFs) {
    ArrayList<DisplayEventCRFBean> answer = new ArrayList<DisplayEventCRFBean>();
    for (int i = 0; i < eventCRFs.size(); i++) {
        EventCRFBean ecb = (EventCRFBean) eventCRFs.get(i);
        // populate the event CRF with its crf bean
        int formLayoutId = ecb.getFormLayoutId();
        FormLayoutBean flb = formLayoutById.get(formLayoutId);
        ecb.setFormLayout(flb);
        CRFBean cb = crfById.get(flb.getCrfId());
        ecb.setCrf(cb);
        EventDefinitionCRFBean edc = null;
        Iterator it = eventDefinitionCRFs.iterator();
        while (it.hasNext()) {
            EventDefinitionCRFBean edcBean = (EventDefinitionCRFBean) it.next();
            if (edcBean.getCrfId() == cb.getId()) {
                edc = edcBean;
                break;
            }
        }
        // rules updated 112007 tbh
        if (status.equals(SubjectEventStatus.LOCKED) || status.equals(SubjectEventStatus.SKIPPED) || status.equals(SubjectEventStatus.STOPPED)) {
            ecb.setStage(DataEntryStage.LOCKED);
        // we need to set a SED-wide flag here, because other edcs
        // in this event can be filled in and change the status, tbh
        } else if (status.equals(SubjectEventStatus.INVALID)) {
            ecb.setStage(DataEntryStage.LOCKED);
        } else if (!cb.getStatus().equals(Status.AVAILABLE)) {
            ecb.setStage(DataEntryStage.LOCKED);
        } else if (!flb.getStatus().equals(Status.AVAILABLE)) {
            ecb.setStage(DataEntryStage.LOCKED);
        }
        // TODO need to refactor since this is similar to other code, tbh
        if (edc != null) {
            // System.out.println("edc is not null, need to set flags");
            DisplayEventCRFBean dec = new DisplayEventCRFBean();
            dec.setEventDefinitionCRF(edc);
            // System.out.println("edc.isDoubleEntry()" +
            // edc.isDoubleEntry() + ecb.getId());
            dec.setFlags(ecb, ub, currentRole, edc.isDoubleEntry());
            if (dec.isLocked()) {
            // System.out.println("*** found a locked DEC:
            // "+edc.getCrfName());
            }
            if (nonEmptyEventCrf.contains(ecb.getId())) {
                // consider an event crf started only if item data get
                // created
                answer.add(dec);
            }
        }
    }
    return answer;
}

Example 34 with FormLayoutBean

use of org.akaza.openclinica.bean.submit.FormLayoutBean in project OpenClinica by OpenClinica.

the class ImportCRFDataService method fetchEventCRFStatuses.

/*
     * purpose: Build a map of EventCRFs and the statuses they should have post-import. Assumes EventCRFs have been
     * created for "Not Started" forms.
     */
public HashMap<Integer, String> fetchEventCRFStatuses(ODMContainer odmContainer) {
    HashMap<Integer, String> eventCRFStatuses = new HashMap<Integer, String>();
    EventCRFDAO eventCrfDAO = new EventCRFDAO(ds);
    StudySubjectDAO studySubjectDAO = new StudySubjectDAO(ds);
    StudyEventDefinitionDAO studyEventDefinitionDAO = new StudyEventDefinitionDAO(ds);
    StudyDAO studyDAO = new StudyDAO(ds);
    StudyEventDAO studyEventDAO = new StudyEventDAO(ds);
    String studyOID = odmContainer.getCrfDataPostImportContainer().getStudyOID();
    StudyBean studyBean = studyDAO.findByOid(studyOID);
    ArrayList<SubjectDataBean> subjectDataBeans = odmContainer.getCrfDataPostImportContainer().getSubjectData();
    for (SubjectDataBean subjectDataBean : subjectDataBeans) {
        ArrayList<StudyEventDataBean> studyEventDataBeans = subjectDataBean.getStudyEventData();
        StudySubjectBean studySubjectBean = studySubjectDAO.findByOidAndStudy(subjectDataBean.getSubjectOID(), studyBean.getId());
        for (StudyEventDataBean studyEventDataBean : studyEventDataBeans) {
            ArrayList<FormDataBean> formDataBeans = studyEventDataBean.getFormData();
            String sampleOrdinal = studyEventDataBean.getStudyEventRepeatKey() == null ? "1" : studyEventDataBean.getStudyEventRepeatKey();
            StudyEventDefinitionBean studyEventDefinitionBean = studyEventDefinitionDAO.findByOidAndStudy(studyEventDataBean.getStudyEventOID(), studyBean.getId(), studyBean.getParentStudyId());
            logger.info("find all by def and subject " + studyEventDefinitionBean.getName() + " study subject " + studySubjectBean.getName());
            StudyEventBean studyEventBean = (StudyEventBean) studyEventDAO.findByStudySubjectIdAndDefinitionIdAndOrdinal(studySubjectBean.getId(), studyEventDefinitionBean.getId(), Integer.parseInt(sampleOrdinal));
            for (FormDataBean formDataBean : formDataBeans) {
                FormLayoutDAO formLayoutDAO = new FormLayoutDAO(ds);
                ArrayList<FormLayoutBean> formLayoutBeans = formLayoutDAO.findAllByOid(formDataBean.getFormOID());
                for (FormLayoutBean formLayoutBean : formLayoutBeans) {
                    ArrayList<EventCRFBean> eventCrfBeans = eventCrfDAO.findByEventSubjectFormLayout(studyEventBean, studySubjectBean, formLayoutBean);
                    for (EventCRFBean ecb : eventCrfBeans) {
                        Integer ecbId = new Integer(ecb.getId());
                        if (!eventCRFStatuses.keySet().contains(ecbId) && formDataBean.getEventCRFStatus() != null) {
                            eventCRFStatuses.put(ecb.getId(), formDataBean.getEventCRFStatus());
                        }
                    }
                }
            }
        }
    }
    return eventCRFStatuses;
}

Example 35 with FormLayoutBean

use of org.akaza.openclinica.bean.submit.FormLayoutBean in project OpenClinica by OpenClinica.

the class ResolveDiscrepancyServlet method prepareRequestForResolution.

public boolean prepareRequestForResolution(HttpServletRequest request, DataSource ds, StudyBean currentStudy, DiscrepancyNoteBean note, boolean isCompleted) throws Exception {
    String entityType = note.getEntityType().toLowerCase();
    int id = note.getEntityId();
    if ("subject".equalsIgnoreCase(entityType)) {
        StudySubjectDAO ssdao = new StudySubjectDAO(ds);
        StudySubjectBean ssb = ssdao.findBySubjectIdAndStudy(id, currentStudy);
        request.setAttribute("action", "show");
        request.setAttribute("id", String.valueOf(note.getEntityId()));
        request.setAttribute("studySubId", String.valueOf(ssb.getId()));
    } else if ("studysub".equalsIgnoreCase(entityType)) {
        request.setAttribute("action", "show");
        request.setAttribute("id", String.valueOf(note.getEntityId()));
    } else if ("eventcrf".equalsIgnoreCase(entityType)) {
        request.setAttribute("editInterview", "1");
        EventCRFDAO ecdao = new EventCRFDAO(ds);
        EventCRFBean ecb = (EventCRFBean) ecdao.findByPK(id);
        request.setAttribute(TableOfContentsServlet.INPUT_EVENT_CRF_BEAN, ecb);
        // If the request is passed along to ViewSectionDataEntryServlet,
        // that code needs
        // an event crf id; the (ecb.getId()+"") is necessary because
        // FormProcessor throws
        // a ClassCastException without the casting to a String
        request.setAttribute(ViewSectionDataEntryServlet.EVENT_CRF_ID, ecb.getId() + "");
    } else if ("studyevent".equalsIgnoreCase(entityType)) {
        StudyEventDAO sedao = new StudyEventDAO(ds);
        StudyEventBean seb = (StudyEventBean) sedao.findByPK(id);
        request.setAttribute(EnterDataForStudyEventServlet.INPUT_EVENT_ID, String.valueOf(id));
        request.setAttribute(UpdateStudyEventServlet.EVENT_ID, String.valueOf(id));
        request.setAttribute(UpdateStudyEventServlet.STUDY_SUBJECT_ID, String.valueOf(seb.getStudySubjectId()));
    } else // this is for item data
    if ("itemdata".equalsIgnoreCase(entityType)) {
        ItemDataDAO iddao = new ItemDataDAO(ds);
        ItemDAO idao = new ItemDAO(ds);
        ItemDataBean idb = (ItemDataBean) iddao.findByPK(id);
        ItemBean item = (ItemBean) idao.findByPK(idb.getItemId());
        ItemGroupMetadataDAO igmdao = new ItemGroupMetadataDAO<>(ds);
        EventCRFDAO ecdao = new EventCRFDAO(ds);
        EventCRFBean ecb = (EventCRFBean) ecdao.findByPK(idb.getEventCRFId());
        FormLayoutDAO fldao = new FormLayoutDAO(ds);
        FormLayoutBean formLayout = (FormLayoutBean) fldao.findByPK(ecb.getFormLayoutId());
        StudyEventDAO sedao = new StudyEventDAO(ds);
        StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
        StudySubjectBean ssb = (StudySubjectBean) ssdao.findByPK(ecb.getStudySubjectId());
        ItemFormMetadataDAO ifmdao = new ItemFormMetadataDAO(ds);
        ItemFormMetadataBean ifmb = ifmdao.findByItemIdAndCRFVersionId(idb.getItemId(), ecb.getFormLayoutId());
        ItemGroupMetadataBean igmBean = (ItemGroupMetadataBean) igmdao.findByItemAndCrfVersion(idb.getItemId(), ecb.getCRFVersionId());
        ItemGroupDAO igdao = new ItemGroupDAO<>(ds);
        ItemGroupBean igBean = (ItemGroupBean) igdao.findByPK(igmBean.getItemGroupId());
        int repeatOrdinal = idb.getOrdinal();
        ItemDataBean idata = null;
        if (idb != null && idb.isDeleted()) {
            return false;
        }
        if (igmBean.isRepeatingGroup() && repeatOrdinal > 1) {
            List<ItemGroupMetadataBean> igms = igmdao.findMetaByGroupAndCrfVersion(igBean.getId(), ecb.getCRFVersionId());
            for (int i = 0; i < idb.getOrdinal(); i++) {
                for (ItemGroupMetadataBean igm : igms) {
                    idata = iddao.findByItemIdAndEventCRFIdAndOrdinal(igm.getItemId(), ecb.getId(), i + 1);
                    if (idata != null && idata.isDeleted()) {
                        repeatOrdinal--;
                        break;
                    }
                }
            }
        }
        EnketoUrlService enketoUrlService = (EnketoUrlService) SpringServletAccess.getApplicationContext(context).getBean("enketoUrlService");
        StudyEventBean seb = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
        // Cache the subject context for use during xform submission
        PFormCache cache = PFormCache.getInstance(context);
        PFormCacheSubjectContextEntry subjectContext = new PFormCacheSubjectContextEntry();
        subjectContext.setStudySubjectOid(ssb.getOid());
        subjectContext.setStudyEventDefinitionId(seb.getStudyEventDefinitionId());
        subjectContext.setOrdinal(seb.getSampleOrdinal());
        subjectContext.setFormLayoutOid(formLayout.getOid());
        subjectContext.setUserAccountId(ub.getId());
        subjectContext.setItemName(item.getName() + COMMENT);
        subjectContext.setItemRepeatOrdinal(repeatOrdinal);
        subjectContext.setItemInRepeatingGroup(igmBean.isRepeatingGroup());
        subjectContext.setItemRepeatGroupName(igBean.getLayoutGroupPath());
        String contextHash = cache.putSubjectContext(subjectContext);
        String formUrl = null;
        if (ecb.getId() > 0) {
            formUrl = enketoUrlService.getEditUrl(contextHash, subjectContext, currentStudy.getOid(), null, null, QUERY_FLAVOR);
        } else {
            formUrl = enketoUrlService.getInitialDataEntryUrl(contextHash, subjectContext, currentStudy.getOid(), QUERY_FLAVOR);
        }
        int hashIndex = formUrl.lastIndexOf("#");
        String part1 = formUrl;
        String part2 = "";
        if (hashIndex != -1) {
            part1 = formUrl.substring(0, hashIndex);
            part2 = formUrl.substring(hashIndex);
        }
        request.setAttribute(EnketoFormServlet.FORM_URL1, part1);
        request.setAttribute(EnketoFormServlet.FORM_URL2, part2);
    }
    return true;
}