Examples with ItemFormMetadataBean org.akaza.openclinica.bean.submit.ItemFormMetadataBean used on opensource projects

Example 71 with ItemFormMetadataBean

use of org.akaza.openclinica.bean.submit.ItemFormMetadataBean in project OpenClinica by OpenClinica.

the class CRFVersionMetadataUtil method retrieveFormMetadata.

/**
 * Builds and returns an ArrayList of SectionBeans that comprise the metadata of a CRFVersion.
 */
public ArrayList<SectionBean> retrieveFormMetadata(CRFVersionBean version) throws Exception {
    ItemDAO idao = new ItemDAO(dataSource);
    ItemFormMetadataDAO ifmdao = new ItemFormMetadataDAO(dataSource);
    // tbh, 102007
    SectionDAO sdao = new SectionDAO(dataSource);
    ItemGroupDAO igdao = new ItemGroupDAO(dataSource);
    ItemGroupMetadataDAO igmdao = new ItemGroupMetadataDAO(dataSource);
    ArrayList sections = (ArrayList) sdao.findByVersionId(version.getId());
    HashMap versionMap = new HashMap();
    for (int i = 0; i < sections.size(); i++) {
        SectionBean section = (SectionBean) sections.get(i);
        versionMap.put(new Integer(section.getId()), section.getItems());
        // YW 08-21-2007, add group metadata
        ArrayList<ItemGroupBean> igs = (ArrayList<ItemGroupBean>) igdao.findGroupBySectionId(section.getId());
        for (int j = 0; j < igs.size(); ++j) {
            ArrayList<ItemGroupMetadataBean> igms = (ArrayList<ItemGroupMetadataBean>) igmdao.findMetaByGroupAndSection(igs.get(j).getId(), section.getCRFVersionId(), section.getId());
            if (!igms.isEmpty()) {
                // Note, the following logic has been adapted here -
                // "for a given crf version,
                // all the items in the same group have the same group
                // metadata
                // so we can get one of them and set metadata for the
                // group"
                igs.get(j).setMeta(igms.get(0));
                igs.get(j).setItemGroupMetaBeans(igms);
            }
        }
        ((SectionBean) sections.get(i)).setGroups(igs);
    // YW >>
    }
    ArrayList items = idao.findAllItemsByVersionId(version.getId());
    // then different query will be used
    if (igmdao.versionIncluded(version.getId())) {
        for (int i = 0; i < items.size(); i++) {
            ItemBean item = (ItemBean) items.get(i);
            ItemFormMetadataBean ifm = ifmdao.findByItemIdAndCRFVersionId(item.getId(), version.getId());
            item.setItemMeta(ifm);
            // logger.info("option******" +
            // ifm.getResponseSet().getOptions().size());
            ArrayList its = (ArrayList) versionMap.get(new Integer(ifm.getSectionId()));
            its.add(item);
        }
    } else {
        for (int i = 0; i < items.size(); i++) {
            ItemBean item = (ItemBean) items.get(i);
            ItemFormMetadataBean ifm = ifmdao.findByItemIdAndCRFVersionIdNotInIGM(item.getId(), version.getId());
            item.setItemMeta(ifm);
            // logger.info("option******" +
            // ifm.getResponseSet().getOptions().size());
            ArrayList its = (ArrayList) versionMap.get(new Integer(ifm.getSectionId()));
            its.add(item);
        }
    }
    for (int i = 0; i < sections.size(); i++) {
        SectionBean section = (SectionBean) sections.get(i);
        section.setItems((ArrayList) versionMap.get(new Integer(section.getId())));
    }
    return sections;
}

Example 72 with ItemFormMetadataBean

use of org.akaza.openclinica.bean.submit.ItemFormMetadataBean in project OpenClinica by OpenClinica.

the class CreateFiltersTwoServlet method processRequest.

// < ResourceBundle restext,resword,respage,resexception;
@Override
public void processRequest() throws Exception {
    // we can't get to here without an action:
    // begin--takes us to specify parameters,
    // where the user will select CRF, then section,
    // then parameters of the section: a little tricky
    // to do entirely with javascript, but can be done.
    // possible to set up the CRF-section relationship,
    // and then have a screen 3.5 with the parameters?
    // criteria--takes us to specify criteria, that is,
    // to specify and, or, not and, etc. here we'll take the
    // list we just generated online and generate a chain
    // of filterobjectbeans, which will in turn,
    // generate the SQL add on for the dataset.
    String action = request.getParameter("action");
    StudyBean studyWithEventDefs = currentStudy;
    if (currentStudy.getParentStudyId() > 0) {
        studyWithEventDefs = new StudyBean();
        studyWithEventDefs.setId(currentStudy.getParentStudyId());
    }
    if (StringUtil.isBlank(action)) {
    // throw an error
    } else if ("begin".equalsIgnoreCase(action)) {
        StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
        HashMap events = sedao.findCRFsByStudy(studyWithEventDefs);
        // if events are empty -- resend to first filter page with message
        if (events.isEmpty()) {
            addPageMessage(respage.getString("no_CRF_assigned_pick_another"));
            FormProcessor fp = new FormProcessor(request);
            FilterDAO fdao = new FilterDAO(sm.getDataSource());
            EntityBeanTable table = fp.getEntityBeanTable();
            ArrayList filters = (ArrayList) fdao.findAll();
            ArrayList filterRows = FilterRow.generateRowsFromBeans(filters);
            String[] columns = { resword.getString("filter_name"), resword.getString("description"), resword.getString("created_by"), resword.getString("created_date"), resword.getString("status"), resword.getString("actions") };
            table.setColumns(new ArrayList(Arrays.asList(columns)));
            table.hideColumnLink(5);
            table.addLink(resword.getString("create_new_filter"), "CreateFiltersOne?action=begin");
            table.setQuery("CreateFiltersOne", new HashMap());
            table.setRows(filterRows);
            table.computeDisplay();
            request.setAttribute("table", table);
            forwardPage(Page.CREATE_FILTER_SCREEN_1);
        } else {
            // else, send to the following page:
            request.setAttribute("events", events);
            forwardPage(Page.CREATE_FILTER_SCREEN_3);
        }
    } else if ("crfselected".equalsIgnoreCase(action)) {
        // get the crf id, return to a new page with sections
        // and parameters attached, tbh
        FormProcessor fp = new FormProcessor(request);
        HashMap errors = new HashMap();
        int crfId = fp.getInt("crfId");
        if (crfId > 0) {
            CRFVersionDAO cvDAO = new CRFVersionDAO(sm.getDataSource());
            CRFDAO cDAO = new CRFDAO(sm.getDataSource());
            SectionDAO secDAO = new SectionDAO(sm.getDataSource());
            Collection sections = secDAO.findByVersionId(crfId);
            CRFVersionBean cvBean = (CRFVersionBean) cvDAO.findByPK(crfId);
            CRFBean cBean = (CRFBean) cDAO.findByPK(cvBean.getCrfId());
            request.setAttribute("sections", sections);
            session.setAttribute("cBean", cBean);
            // for further pages,
            session.setAttribute("cvBean", cvBean);
            // tbh
            forwardPage(Page.CREATE_FILTER_SCREEN_3_1);
        } else {
            addPageMessage(respage.getString("select_a_CRF_before_picking"));
            StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
            HashMap events = sedao.findCRFsByStudy(studyWithEventDefs);
            request.setAttribute("events", events);
            forwardPage(Page.CREATE_FILTER_SCREEN_3);
        }
    } else if ("sectionselected".equalsIgnoreCase(action)) {
        // TODO set the crf and the section into session,
        // allow for the user to go back and forth,
        // set up the questions to be picked,
        // allow the user to move on to create_filter_screen_4
        FormProcessor fp = new FormProcessor(request);
        int sectionId = fp.getInt("sectionId");
        if (sectionId > 0) {
            SectionDAO secDAO = new SectionDAO(sm.getDataSource());
            SectionBean secBean = (SectionBean) secDAO.findByPK(sectionId);
            session.setAttribute("secBean", secBean);
            ItemFormMetadataDAO ifmDAO = new ItemFormMetadataDAO(sm.getDataSource());
            Collection metadatas = ifmDAO.findAllBySectionId(sectionId);
            if (metadatas.size() > 0) {
                request.setAttribute("metadatas", metadatas);
                forwardPage(Page.CREATE_FILTER_SCREEN_3_2);
            } else {
                CRFVersionBean cvBean = (CRFVersionBean) session.getAttribute("cvBean");
                addPageMessage(respage.getString("section_not_have_questions_select_another"));
                // SectionDAO secDAO = new SectionDAO(sm.getDataSource());
                Collection sections = secDAO.findByVersionId(cvBean.getId());
                request.setAttribute("sections", sections);
                forwardPage(Page.CREATE_FILTER_SCREEN_3_1);
            }
        } else {
            CRFVersionBean cvBean = (CRFVersionBean) session.getAttribute("cvBean");
            addPageMessage(respage.getString("select_section_before_select_question"));
            SectionDAO secDAO = new SectionDAO(sm.getDataSource());
            Collection sections = secDAO.findByVersionId(cvBean.getId());
            request.setAttribute("sections", sections);
            forwardPage(Page.CREATE_FILTER_SCREEN_3_1);
        }
    } else if ("questionsselected".equalsIgnoreCase(action)) {
        ArrayList alist = this.extractIdsFromForm();
        // and send the user to create_filter_screen_4
        if (alist.size() > 0) {
            ItemFormMetadataDAO ifmDAO = new ItemFormMetadataDAO(sm.getDataSource());
            Collection questions = ifmDAO.findByMultiplePKs(alist);
            session.setAttribute("questions", questions);
            forwardPage(Page.CREATE_FILTER_SCREEN_4);
        } else {
            SectionBean secBean = (SectionBean) session.getAttribute("secBean");
            addPageMessage(respage.getString("select_questions_before_set_parameters"));
            ItemFormMetadataDAO ifmDAO = new ItemFormMetadataDAO(sm.getDataSource());
            Collection metadatas = ifmDAO.findAllBySectionId(secBean.getId());
            request.setAttribute("metadatas", metadatas);
            forwardPage(Page.CREATE_FILTER_SCREEN_3_2);
        }
    } else if ("validatecriteria".equalsIgnoreCase(action)) {
        // TODO look at the criteria and create a list of filterobjectdata
        // beans, so that we can create the SQL later on in
        // the process.
        // also, throw the user back to the process or throw
        // them forward into the createServletThree process
        FormProcessor fp = new FormProcessor(request);
        String logical = fp.getString("logical");
        ArrayList questions = (ArrayList) session.getAttribute("questions");
        ArrayList filterobjects = new ArrayList();
        // (ArrayList)session.getAttribute("filterobjects");
        Iterator q_it = questions.iterator();
        int arrCnt = 0;
        while (q_it.hasNext()) {
            ItemFormMetadataBean ifmBean = (ItemFormMetadataBean) q_it.next();
            String opString = "operator:" + ifmBean.getId();
            String valString = "value:" + ifmBean.getId();
            String remString = "remove:" + ifmBean.getId();
            if ("remove".equals(fp.getString(remString))) {
                logger.info("found the string: " + remString);
                // TODO remove the question from from the list,
                // redirect to that page again????? <--maybe not?
                // questions.remove(arrCnt);
                // shouldn't have to remove the above, just do nothing
                arrCnt++;
            } else {
                String operator = fp.getString(opString);
                String value = fp.getString(valString);
                FilterObjectBean fob = new FilterObjectBean();
                fob.setItemId(ifmBean.getId());
                fob.setItemName(ifmBean.getHeader() + " " + ifmBean.getLeftItemText() + " " + ifmBean.getRightItemText());
                // case operator:
                if ("equal to".equalsIgnoreCase(operator)) {
                    fob.setOperand("=");
                } else if ("greater than".equalsIgnoreCase(operator)) {
                    fob.setOperand(">");
                } else if ("less than".equalsIgnoreCase(operator)) {
                    fob.setOperand("<");
                } else if ("greater than or equal".equalsIgnoreCase(operator)) {
                    fob.setOperand(">=");
                } else if ("less than or equal".equalsIgnoreCase(operator)) {
                    fob.setOperand("<=");
                } else if ("like".equalsIgnoreCase(operator)) {
                    fob.setOperand(" like ");
                } else if ("not like".equalsIgnoreCase(operator)) {
                    fob.setOperand(" not like ");
                } else {
                    fob.setOperand("!=");
                }
                fob.setValue(value);
                filterobjects.add(fob);
            }
        // end else
        // 
        }
        // end while
        session.setAttribute("questions", questions);
        // TODO where does the connector come into play?
        // session.setAttribute("filterobjects",filterobjects);
        FilterDAO fDAO = new FilterDAO(sm.getDataSource());
        String newSQL = (String) session.getAttribute("newSQL");
        ArrayList newExp = (ArrayList) session.getAttribute("newExp");
        // human readable explanation
        String newNewSQL = fDAO.genSQLStatement(newSQL, logical, filterobjects);
        ArrayList newNewExp = fDAO.genExplanation(newExp, logical, filterobjects);
        if (arrCnt == questions.size()) {
            newNewSQL = newSQL;
            newNewExp = newExp;
        // don't change anything, if we've removed everything from this
        // list
        }
        logger.info("new SQL Generated: " + newNewSQL);
        String sub = fp.getString("submit");
        if ("Specify Filter Metadata".equals(sub)) {
            // add new params, create the filter object,
            // and go to create metadata
            FilterBean fb = new FilterBean();
            fb.setSQLStatement(newNewSQL + ")");
            // adding parens here to finish off other
            // statement--might add first part of statement here
            // for legibility's sake
            // tbh 06-02-2005
            session.removeAttribute("newSQL");
            // end of the road
            session.setAttribute("newFilter", fb);
            request.setAttribute("statuses", getStatuses());
            forwardPage(Page.CREATE_FILTER_SCREEN_5);
        } else {
            // replace the 'old' sql with the new sql gathered from the
            // session
            session.setAttribute("newSQL", newNewSQL);
            session.setAttribute("newExp", newNewExp);
            // add new params, and go back
            StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
            HashMap events = sedao.findCRFsByStudy(currentStudy);
            // 
            request.setAttribute("events", events);
            forwardPage(Page.CREATE_FILTER_SCREEN_3);
        }
    }
}

Example 73 with ItemFormMetadataBean

use of org.akaza.openclinica.bean.submit.ItemFormMetadataBean in project OpenClinica by OpenClinica.

the class DataEntryServlet method isEachRequiredFieldFillout.

protected boolean isEachRequiredFieldFillout(HttpServletRequest request) {
    HttpSession session = request.getSession();
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(getDataSource());
    // need to update this method to accomodate dynamics, tbh
    ItemDataDAO iddao = new ItemDataDAO(getDataSource(), locale);
    ItemDAO idao = new ItemDAO(getDataSource());
    ItemFormMetadataDAO itemFormMetadataDao = new ItemFormMetadataDAO(getDataSource());
    // Below code will iterate all shown and hidden required fields/items in a crf version and verify if the data field is filled up with value or if not , then it is a hidden field with no show rule triggered for the item.
    ArrayList<ItemFormMetadataBean> shownRequiredAllItemsInCrfVersion = itemFormMetadataDao.findAllItemsRequiredAndShownByCrfVersionId(ecb.getCRFVersionId());
    ArrayList<ItemFormMetadataBean> hiddenRequiredAllItemsInCrfVersion = itemFormMetadataDao.findAllItemsRequiredAndHiddenByCrfVersionId(ecb.getCRFVersionId());
    ItemGroupMetadataDAO<String, ArrayList> igdao = new ItemGroupMetadataDAO<String, ArrayList>(dataSource);
    ArrayList<ItemDataBean> itemdatas = null;
    for (ItemFormMetadataBean shownItemMeta : shownRequiredAllItemsInCrfVersion) {
        ItemGroupMetadataBean igBean = (ItemGroupMetadataBean) igdao.findByItemAndCrfVersion(shownItemMeta.getItemId(), ecb.getCRFVersionId());
        // verifies if the group that the item belongs to is not hidden.
        if (igBean != null && igBean.isShowGroup()) {
            itemdatas = iddao.findAllByEventCRFIdAndItemId(ecb.getId(), shownItemMeta.getItemId());
            if (itemdatas == null || itemdatas.size() == 0)
                return false;
            for (ItemDataBean itemdata : itemdatas) {
                System.out.println(itemdata.getItemId() + "  :  " + itemdata.getValue());
                if ((itemdata.getValue() == null || itemdata.getValue().equals("") || itemdata.getValue().trim().length() == 0) && dndao.findNumExistingNotesForItem(itemdata.getId()) < 1) {
                    return false;
                }
            }
        }
        ArrayList<DynamicsItemFormMetadataBean> dynamicsItemFormMetadataBeans = null;
        for (ItemFormMetadataBean hiddenItemMeta : hiddenRequiredAllItemsInCrfVersion) {
            itemdatas = iddao.findAllByEventCRFIdAndItemId(ecb.getId(), hiddenItemMeta.getItemId());
            dynamicsItemFormMetadataBeans = getItemMetadataService().getDynamicsItemFormMetadataDao().findByItemAndEventCrfShown(ecb, hiddenItemMeta.getItemId());
            if (itemdatas.size() == 0 && dynamicsItemFormMetadataBeans.size() > 0) {
                return false;
            }
            for (ItemDataBean itemdata : itemdatas) {
                if ((itemdata.getValue() == null || itemdata.getValue().equals("") || itemdata.getValue().trim().length() == 0) && dndao.findNumExistingNotesForItem(itemdata.getId()) < 1 && dynamicsItemFormMetadataBeans.size() > 0) {
                    return false;
                }
            }
        }
    }
    // had to change the query below to allow for hidden items here, tbh 04/2010
    ArrayList allFilled = iddao.findAllBlankRequiredByEventCRFId(ecb.getId(), ecb.getCRFVersionId());
    int numNotes = 0;
    if (!allFilled.isEmpty()) {
        LOGGER.trace("allFilled is not empty");
        FormDiscrepancyNotes fdn = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
        HashMap idNotes = fdn.getIdNotes();
        for (int i = 0; i < allFilled.size(); i++) {
            ItemDataBean idb = (ItemDataBean) allFilled.get(i);
            int exsitingNotes = dndao.findNumExistingNotesForItem(idb.getId());
            if (exsitingNotes > 0) {
                LOGGER.trace("has existing note");
                numNotes++;
            } else if (idNotes.containsKey(idb.getId())) {
                LOGGER.trace("has note in session");
                numNotes++;
            }
        }
        LOGGER.trace("numNotes allFilled.size:" + numNotes + " " + allFilled.size());
        if (numNotes >= allFilled.size()) {
            LOGGER.trace("all required are filled out");
            return true;
        } else {
            LOGGER.debug("numNotes < allFilled.size() " + numNotes + ": " + allFilled.size());
            return false;
        }
    }
    return true;
}

Example 74 with ItemFormMetadataBean

use of org.akaza.openclinica.bean.submit.ItemFormMetadataBean in project OpenClinica by OpenClinica.

the class DataEntryServlet method buildMatrixForRepeatingGroups.

// @pgawade 30-May-2012 Fix for issue 13963 - added an extra parameter 'isSubmitted' to method buildMatrixForRepeatingGroups
protected DisplayItemWithGroupBean buildMatrixForRepeatingGroups(DisplayItemWithGroupBean diwgb, DisplayItemGroupBean itemGroup, EventCRFBean ecb, SectionBean sb, List<ItemBean> itBeans, Map<String, ItemDataBean> dataMap, List<String> nullValuesList, boolean isSubmitted) {
    int tempOrdinal = 1;
    ItemDataDAO iddao = new ItemDataDAO(getDataSource(), locale);
    int maxOrdinal = iddao.getMaxOrdinalForGroup(ecb, sb, itemGroup.getItemGroupBean());
    // Incase of no data
    if (maxOrdinal == 0)
        maxOrdinal = 1;
    ItemFormMetadataDAO ifmdao = new ItemFormMetadataDAO<String, ArrayList>(getDataSource());
    List<DisplayItemGroupBean> itemGroups = new ArrayList<DisplayItemGroupBean>();
    boolean groupHasData = false;
    for (int i = 1; i <= maxOrdinal; i++) {
        List<DisplayItemBean> displayItemBeans = new ArrayList<DisplayItemBean>();
        DisplayItemGroupBean dig = new DisplayItemGroupBean();
        for (ItemBean itBean : itBeans) {
            DisplayItemBean displayItemBean = new DisplayItemBean();
            ItemFormMetadataBean ifm = ifmdao.findByItemIdAndCRFVersionId(itBean.getId(), ecb.getCRFVersionId());
            // itBean.setItemMeta(ifm);//TODO:remove this or the one down displayItemBean.setMetadata(ifm);
            displayItemBean.setMetadata(ifm);
            displayItemBean.setItem(itBean);
            ItemDataBean itemData = dataMap.get(itBean.getId() + "," + i);
            if (itemData != null) {
                // to indicate any item in the group has data;
                groupHasData = true;
                displayItemBean.setIsNewItem(false);
            }
            if (itemData == null) {
                itemData = displayItemBean.getData();
                itemData.setValue("");
                itemData.setOrdinal(i);
            }
            addNullValues(displayItemBean, nullValuesList);
            displayItemBean.setData(itemData);
            // displayItemBean.loadDBValue();
            if (ecb.getStage() == DataEntryStage.INITIAL_DATA_ENTRY_COMPLETE || ecb.getStage() == DataEntryStage.DOUBLE_DATA_ENTRY_COMPLETE) {
                if (shouldLoadDBValues(displayItemBean) && !isSubmitted) {
                    displayItemBean.loadDBValue();
                }
            } else {
                if (shouldLoadDBValues(displayItemBean)) {
                    LOGGER.trace("should load db values is true, set value");
                    displayItemBean.loadDBValue();
                    LOGGER.trace("just got data loaded: " + displayItemBean.getData().getValue());
                }
            }
            displayItemBeans.add(displayItemBean);
        }
        Collections.sort(displayItemBeans);
        dig.setItems(displayItemBeans);
        dig.setHasData(groupHasData);
        itemGroups.add(dig);
    }
    diwgb.setItemGroups(itemGroups);
    diwgb.setDbItemGroups(itemGroups);
    return diwgb;
}

Example 75 with ItemFormMetadataBean

use of org.akaza.openclinica.bean.submit.ItemFormMetadataBean in project OpenClinica by OpenClinica.

the class DataEntryServlet method validateDisplayItemBeanSingleCV.

/**
 * Peform validation on a item which has a RADIO or SINGLESELECTresponse type. This function checks that the input isn't blank, and that its value comes
 * from the controlled vocabulary (ResponseSetBean) in the DisplayItemBean.
 *
 * @param v
 *            The Validator to add validations to.
 * @param dib
 *            The DisplayItemBean to validate.
 * @return The DisplayItemBean which is validated.
 */
protected DisplayItemBean validateDisplayItemBeanSingleCV(DiscrepancyValidator v, DisplayItemBean dib, String inputName) {
    if (StringUtil.isBlank(inputName)) {
        inputName = getInputName(dib);
    }
    ItemFormMetadataBean ibMeta = dib.getMetadata();
    ItemDataBean idb = dib.getData();
    if (StringUtil.isBlank(idb.getValue())) {
        if (ibMeta.isRequired() && ibMeta.isShowItem()) {
            v.addValidation(inputName, Validator.IS_REQUIRED);
        }
    } else {
        v.addValidation(inputName, Validator.IN_RESPONSE_SET_SINGLE_VALUE, dib.getMetadata().getResponseSet());
    }
    customValidation(v, dib, inputName);
    return dib;
}