Examples with SectionBean org.akaza.openclinica.bean.submit.SectionBean used on opensource projects

Example 6 with SectionBean

use of org.akaza.openclinica.bean.submit.SectionBean in project OpenClinica by OpenClinica.

the class DynamicsMetadataService method show.

public void show(Integer itemDataId, List<PropertyBean> properties, RuleSetBean ruleSet) {
    ItemDataBean itemDataBeanA = (ItemDataBean) getItemDataDAO().findByPK(itemDataId);
    EventCRFBean eventCrfBeanA = (EventCRFBean) getEventCRFDAO().findByPK(itemDataBeanA.getEventCRFId());
    StudyEventBean studyEventBeanA = (StudyEventBean) getStudyEventDAO().findByPK(eventCrfBeanA.getStudyEventId());
    ItemGroupMetadataBean itemGroupMetadataBeanA = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemDataBeanA.getItemId(), eventCrfBeanA.getCRFVersionId());
    Boolean isGroupARepeating = isGroupRepeating(itemGroupMetadataBeanA);
    String itemGroupAOrdinal = getExpressionService().getGroupOrdninalCurated(ruleSet.getTarget().getValue());
    for (PropertyBean propertyBean : properties) {
        String oid = propertyBean.getOid();
        ItemOrItemGroupHolder itemOrItemGroup = getItemOrItemGroup(oid);
        // OID is an item
        if (itemOrItemGroup.getItemBean() != null) {
            ItemDataBean oidBasedItemData = getItemData(itemOrItemGroup.getItemBean(), eventCrfBeanA, itemDataBeanA.getOrdinal());
            ItemFormMetadataBean itemFormMetadataBean = getItemFormMetadataDAO().findByItemIdAndCRFVersionId(itemOrItemGroup.getItemBean().getId(), eventCrfBeanA.getCRFVersionId());
            DynamicsItemFormMetadataBean dynamicsMetadataBean = getDynamicsItemFormMetadataBean(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
            if (dynamicsMetadataBean == null) {
                showItem(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
            } else if (dynamicsMetadataBean != null && !dynamicsMetadataBean.isShowItem()) {
                dynamicsMetadataBean.setShowItem(true);
                getDynamicsItemFormMetadataDao().saveOrUpdate(dynamicsMetadataBean);
            }
        } else // OID is a group
        {
            logger.debug("found item group id 1 " + oid);
            ItemGroupBean itemGroupBean = itemOrItemGroup.getItemGroupBean();
            ArrayList sectionBeans = getSectionDAO().findAllByCRFVersionId(eventCrfBeanA.getCRFVersionId());
            for (int i = 0; i < sectionBeans.size(); i++) {
                SectionBean sectionBean = (SectionBean) sectionBeans.get(i);
                // System.out.println("found section " + sectionBean.getId());
                List<ItemGroupMetadataBean> itemGroupMetadataBeans = getItemGroupMetadataDAO().findMetaByGroupAndSection(itemGroupBean.getId(), eventCrfBeanA.getCRFVersionId(), sectionBean.getId());
                for (ItemGroupMetadataBean itemGroupMetadataBean : itemGroupMetadataBeans) {
                    if (itemGroupMetadataBean.getItemGroupId() == itemGroupBean.getId()) {
                        // System.out.println("found item group id 2 " + oid);
                        DynamicsItemGroupMetadataBean dynamicsGroupBean = getDynamicsItemGroupMetadataBean(itemGroupMetadataBean, eventCrfBeanA);
                        if (dynamicsGroupBean == null) {
                            showGroup(itemGroupMetadataBean, eventCrfBeanA);
                        } else if (dynamicsGroupBean != null && !dynamicsGroupBean.isShowGroup()) {
                            dynamicsGroupBean.setShowGroup(true);
                            getDynamicsItemGroupMetadataDao().saveOrUpdate(dynamicsGroupBean);
                        }
                    }
                }
            }
        }
    }
}

Example 7 with SectionBean

use of org.akaza.openclinica.bean.submit.SectionBean in project OpenClinica by OpenClinica.

the class DynamicsMetadataService method hideNew.

public void hideNew(Integer itemDataId, List<PropertyBean> properties, UserAccountBean ub, RuleSetBean ruleSet) {
    ItemDataBean itemDataBeanA = (ItemDataBean) getItemDataDAO().findByPK(itemDataId);
    EventCRFBean eventCrfBeanA = (EventCRFBean) getEventCRFDAO().findByPK(itemDataBeanA.getEventCRFId());
    ItemGroupMetadataBean itemGroupMetadataBeanA = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemDataBeanA.getItemId(), eventCrfBeanA.getCRFVersionId());
    Boolean isGroupARepeating = isGroupRepeating(itemGroupMetadataBeanA);
    String itemGroupAOrdinal = getExpressionService().getGroupOrdninalCurated(ruleSet.getTarget().getValue());
    for (PropertyBean propertyBean : properties) {
        String oid = propertyBean.getOid();
        ItemOrItemGroupHolder itemOrItemGroup = getItemOrItemGroup(oid);
        // OID is an item
        if (itemOrItemGroup.getItemBean() != null) {
            String expression = getExpressionService().constructFullExpressionIfPartialProvided(propertyBean.getOid(), ruleSet.getTarget().getValue());
            ItemBean itemBeanB = getExpressionService().getItemBeanFromExpression(expression);
            ItemGroupBean itemGroupBeanB = getExpressionService().getItemGroupExpression(expression);
            EventCRFBean eventCrfBeanB = eventCrfBeanA;
            ItemGroupMetadataBean itemGroupMetadataBeanB = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemBeanB.getId(), eventCrfBeanB.getCRFVersionId());
            Boolean isGroupBRepeating = isGroupRepeating(itemGroupMetadataBeanB);
            String itemGroupBOrdinal = getExpressionService().getGroupOrdninalCurated(expression);
            List<ItemDataBean> itemDataBeans = new ArrayList<ItemDataBean>();
            // If A and B are both non repeating groups
            if (!isGroupARepeating && !isGroupBRepeating) {
                ItemDataBean oidBasedItemData = oneToOne(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, 1);
                itemDataBeans.add(oidBasedItemData);
            }
            // If A is not repeating group & B is a repeating group with no index selected
            if (!isGroupARepeating && isGroupBRepeating && itemGroupBOrdinal.equals("")) {
                List<ItemDataBean> oidBasedItemDatas = oneToMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub);
                itemDataBeans.addAll(oidBasedItemDatas);
            }
            // If A is not repeating group & B is a repeating group with index selected
            if (!isGroupARepeating && isGroupBRepeating && !itemGroupBOrdinal.equals("")) {
                ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupBOrdinal));
                itemDataBeans.add(oidBasedItemData);
            }
            // If A is repeating group with index & B is a repeating group with index selected
            if (isGroupARepeating && isGroupBRepeating && !itemGroupBOrdinal.equals("")) {
                ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupBOrdinal));
                itemDataBeans.add(oidBasedItemData);
            }
            // If A is repeating group with index & B is a repeating group with no index selected
            if (isGroupARepeating && isGroupBRepeating && itemGroupBOrdinal.equals("")) {
                ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupAOrdinal));
                itemDataBeans.add(oidBasedItemData);
            }
            for (ItemDataBean oidBasedItemData : itemDataBeans) {
                ItemFormMetadataBean itemFormMetadataBean = getItemFormMetadataDAO().findByItemIdAndCRFVersionId(itemOrItemGroup.getItemBean().getId(), eventCrfBeanA.getCRFVersionId());
                DynamicsItemFormMetadataBean dynamicsMetadataBean = getDynamicsItemFormMetadataBean(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
                if (dynamicsMetadataBean == null && oidBasedItemData.getValue().equals("")) {
                    hideNewItem(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
                } else if (dynamicsMetadataBean != null && dynamicsMetadataBean.isShowItem() && oidBasedItemData.getValue().equals("")) {
                    // tbh #5287: add an additional check here to see if it should be hidden
                    dynamicsMetadataBean.setShowItem(false);
                    getDynamicsItemFormMetadataDao().saveOrUpdate(dynamicsMetadataBean);
                }
            }
        } else // OID is a group
        {
            // ItemGroupBean itemGroupBean = itemOrItemGroup.getItemGroupBean();
            // below taken from showNew and reversed, tbh 07/2010
            logger.debug("found item group id 1 " + oid);
            ItemGroupBean itemGroupBean = itemOrItemGroup.getItemGroupBean();
            ArrayList sectionBeans = getSectionDAO().findAllByCRFVersionId(eventCrfBeanA.getCRFVersionId());
            for (int i = 0; i < sectionBeans.size(); i++) {
                SectionBean sectionBean = (SectionBean) sectionBeans.get(i);
                // System.out.println("found section " + sectionBean.getId());
                List<ItemGroupMetadataBean> itemGroupMetadataBeans = getItemGroupMetadataDAO().findMetaByGroupAndSection(itemGroupBean.getId(), eventCrfBeanA.getCRFVersionId(), sectionBean.getId());
                for (ItemGroupMetadataBean itemGroupMetadataBean : itemGroupMetadataBeans) {
                    if (itemGroupMetadataBean.getItemGroupId() == itemGroupBean.getId()) {
                        // System.out.println("found item group id 2 " + oid);
                        DynamicsItemGroupMetadataBean dynamicsGroupBean = getDynamicsItemGroupMetadataBean(itemGroupMetadataBean, eventCrfBeanA);
                        if (dynamicsGroupBean == null) {
                            hideGroup(itemGroupMetadataBean, eventCrfBeanA);
                        } else if (dynamicsGroupBean != null && !dynamicsGroupBean.isShowGroup()) {
                            dynamicsGroupBean.setShowGroup(false);
                            getDynamicsItemGroupMetadataDao().saveOrUpdate(dynamicsGroupBean);
                        // TODO is below required in hide?
                        } else if (eventCrfBeanA.getStage().equals(DataEntryStage.DOUBLE_DATA_ENTRY)) {
                            //setVersion(1); // version 1 = passed DDE
                            dynamicsGroupBean.setPassedDde(1);
                            getDynamicsItemGroupMetadataDao().saveOrUpdate(dynamicsGroupBean);
                        }
                    }
                }
            }
        }
    }
// tbh #5287: reset the check to make sure items that have been shown are not re-hidden
// resetItemCounter();
}

Example 8 with SectionBean

use of org.akaza.openclinica.bean.submit.SectionBean in project OpenClinica by OpenClinica.

the class RestoreCRFServlet method processRequest.

@Override
public void processRequest() throws Exception {
    CRFDAO cdao = new CRFDAO(sm.getDataSource());
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    // checks which module the requests are from
    String module = fp.getString(MODULE);
    request.setAttribute(MODULE, module);
    int crfId = fp.getInt("id", true);
    String action = request.getParameter("action");
    if (crfId == 0) {
        addPageMessage(respage.getString("please_choose_a_CRF_to_restore"));
        forwardPage(Page.CRF_LIST_SERVLET);
    } else {
        CRFBean crf = (CRFBean) cdao.findByPK(crfId);
        ArrayList versions = cvdao.findAllByCRFId(crfId);
        crf.setVersions(versions);
        EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
        ArrayList edcs = (ArrayList) edcdao.findAllByCRF(crfId);
        SectionDAO secdao = new SectionDAO(sm.getDataSource());
        EventCRFDAO evdao = new EventCRFDAO(sm.getDataSource());
        ArrayList eventCRFs = evdao.findAllByCRF(crfId);
        if ("confirm".equalsIgnoreCase(action)) {
            request.setAttribute("crfToRestore", crf);
            request.setAttribute("eventCRFs", eventCRFs);
            forwardPage(Page.RESTORE_CRF);
        } else {
            logger.info("submit to restore the crf");
            crf.setStatus(Status.AVAILABLE);
            crf.setUpdater(ub);
            crf.setUpdatedDate(new Date());
            cdao.update(crf);
            for (int i = 0; i < versions.size(); i++) {
                CRFVersionBean version = (CRFVersionBean) versions.get(i);
                if (version.getStatus().equals(Status.AUTO_DELETED)) {
                    version.setStatus(Status.AVAILABLE);
                    version.setUpdater(ub);
                    version.setUpdatedDate(new Date());
                    cvdao.update(version);
                    ArrayList sections = secdao.findAllByCRFVersionId(version.getId());
                    for (int j = 0; j < sections.size(); j++) {
                        SectionBean section = (SectionBean) sections.get(j);
                        if (section.getStatus().equals(Status.AUTO_DELETED)) {
                            section.setStatus(Status.AVAILABLE);
                            section.setUpdater(ub);
                            section.setUpdatedDate(new Date());
                            secdao.update(section);
                        }
                    }
                }
            }
            for (int i = 0; i < edcs.size(); i++) {
                EventDefinitionCRFBean edc = (EventDefinitionCRFBean) edcs.get(i);
                if (edc.getStatus().equals(Status.AUTO_DELETED)) {
                    edc.setStatus(Status.AVAILABLE);
                    edc.setUpdater(ub);
                    edc.setUpdatedDate(new Date());
                    edcdao.update(edc);
                }
            }
            ItemDataDAO idao = new ItemDataDAO(sm.getDataSource());
            for (int i = 0; i < eventCRFs.size(); i++) {
                EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(i);
                if (eventCRF.getStatus().equals(Status.AUTO_DELETED)) {
                    eventCRF.setStatus(Status.AVAILABLE);
                    eventCRF.setUpdater(ub);
                    eventCRF.setUpdatedDate(new Date());
                    evdao.update(eventCRF);
                    ArrayList items = idao.findAllByEventCRFId(eventCRF.getId());
                    for (int j = 0; j < items.size(); j++) {
                        ItemDataBean item = (ItemDataBean) items.get(j);
                        if (item.getStatus().equals(Status.AUTO_DELETED)) {
                            item.setStatus(Status.AVAILABLE);
                            item.setUpdater(ub);
                            item.setUpdatedDate(new Date());
                            idao.update(item);
                        }
                    }
                }
            }
            addPageMessage(respage.getString("the_CRF") + crf.getName() + " " + respage.getString("has_been_restored_succesfully"));
            forwardPage(Page.CRF_LIST_SERVLET);
        }
    }
}

Example 9 with SectionBean

use of org.akaza.openclinica.bean.submit.SectionBean in project OpenClinica by OpenClinica.

the class RestoreCRFVersionServlet method processRequest.

@Override
public void processRequest() throws Exception {
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    // checks which module the requests are from
    String module = fp.getString(MODULE);
    request.setAttribute(MODULE, module);
    int versionId = fp.getInt("id", true);
    String action = fp.getString("action");
    if (versionId == 0) {
        addPageMessage(respage.getString("please_choose_a_CRF_version_to_restore"));
        forwardPage(Page.CRF_LIST_SERVLET);
    } else {
        if (StringUtil.isBlank(action)) {
            addPageMessage(respage.getString("no_action_specified"));
            forwardPage(Page.CRF_LIST_SERVLET);
            return;
        }
        CRFVersionBean version = (CRFVersionBean) cvdao.findByPK(versionId);
        SectionDAO secdao = new SectionDAO(sm.getDataSource());
        EventCRFDAO evdao = new EventCRFDAO(sm.getDataSource());
        // find all event crfs by version id
        ArrayList eventCRFs = evdao.findAllByCRFVersion(versionId);
        if ("confirm".equalsIgnoreCase(action)) {
            request.setAttribute("versionToRestore", version);
            request.setAttribute("eventCRFs", eventCRFs);
            forwardPage(Page.RESTORE_CRF_VERSION);
        } else {
            logger.info("submit to restore the crf version");
            // version
            version.setStatus(Status.AVAILABLE);
            version.setUpdater(ub);
            version.setUpdatedDate(new Date());
            cvdao.update(version);
            // all sections
            ArrayList sections = secdao.findAllByCRFVersionId(version.getId());
            for (int j = 0; j < sections.size(); j++) {
                SectionBean section = (SectionBean) sections.get(j);
                if (section.getStatus().equals(Status.AUTO_DELETED)) {
                    section.setStatus(Status.AVAILABLE);
                    section.setUpdater(ub);
                    section.setUpdatedDate(new Date());
                    secdao.update(section);
                }
            }
            // all item data related to event crfs
            ItemDataDAO idao = new ItemDataDAO(sm.getDataSource());
            for (int i = 0; i < eventCRFs.size(); i++) {
                EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(i);
                if (eventCRF.getStatus().equals(Status.AUTO_DELETED)) {
                    eventCRF.setStatus(Status.AVAILABLE);
                    eventCRF.setUpdater(ub);
                    eventCRF.setUpdatedDate(new Date());
                    evdao.update(eventCRF);
                    ArrayList items = idao.findAllByEventCRFId(eventCRF.getId());
                    for (int j = 0; j < items.size(); j++) {
                        ItemDataBean item = (ItemDataBean) items.get(j);
                        if (item.getStatus().equals(Status.AUTO_DELETED)) {
                            item.setStatus(Status.AVAILABLE);
                            item.setUpdater(ub);
                            item.setUpdatedDate(new Date());
                            idao.update(item);
                        }
                    }
                }
            }
            addPageMessage(respage.getString("the_CRF_version") + version.getName() + " " + respage.getString("has_been_restored_succesfully"));
            forwardPage(Page.CRF_LIST_SERVLET);
        }
    }
}

Example 10 with SectionBean

use of org.akaza.openclinica.bean.submit.SectionBean in project OpenClinica by OpenClinica.

the class BeanFactory method createDisplaySectionBean.

// Create a DisplaySectionBean using an items map, a section's title,
// the section's page number, and the CRF name/ The CRF name is needed for
// creating the ResponseSetBean.
public DisplaySectionBean createDisplaySectionBean(Map<Integer, Map<String, String>> map, String sectionTitle, String sectionLabel, String sectionSubtitle, String instructions, String crfName, int sectionBorders) {
    // Play defense!
    if (map == null)
        return new DisplaySectionBean();
    // Display a section title in the JSP
    SectionBean sbean = new SectionBean();
    sbean.setTitle(sectionTitle);
    sbean.setSubtitle(sectionSubtitle);
    sbean.setInstructions(instructions);
    sbean.setBorders(sectionBorders);
    DisplaySectionBean displaySectionBean = new DisplaySectionBean();
    displaySectionBean.setSection(sbean);
    ArrayList<DisplayItemBean> allDisplayItems = new ArrayList<DisplayItemBean>();
    List<DisplayItemBean> childrenItems = new ArrayList<DisplayItemBean>();
    DisplayItemBean displayItem;
    ItemFormMetadataBean itemMeta;
    Map.Entry<Integer, Map<String, String>> me;
    Map<String, String> innerMap;
    for (Iterator<Map.Entry<Integer, Map<String, String>>> iter = map.entrySet().iterator(); iter.hasNext(); ) {
        displayItem = new DisplayItemBean();
        // me is one row in the list of Items, indexed by the item number
        me = iter.next();
        if (itemSecLabelMatchesSection(me, sectionLabel)) {
            itemMeta = this.createItemFormMetadataBean(me, crfName);
            displayItem.setMetadata(itemMeta);
            innerMap = me.getValue();
            displayItem.setItem(this.createItemBean(innerMap));
            // Compensate for any items that identify themselves as parents
            String parentName = displayItem.getMetadata().getParentLabel();
            if (parentName.length() > 0 && !displayItem.getItem().getName().equalsIgnoreCase(parentName)) {
                displayItem.getMetadata().setParentId(1);
                childrenItems.add(displayItem);
            } else {
                allDisplayItems.add(displayItem);
            }
        }
    }
    // Set the children for each of the display items
    for (DisplayItemBean parentBean : allDisplayItems) {
        parentBean.setChildren(this.createChildren(childrenItems, parentBean));
    }
    // Sort the List of DisplayItemBeans based on their ordinal; see
    // getDisplayBean() in DataEntryServlet
    Collections.sort(allDisplayItems);
    displaySectionBean.setItems(allDisplayItems);
    return displaySectionBean;
}