Example 6 with FormDiscrepancyNotes
use of org.akaza.openclinica.control.form.FormDiscrepancyNotes in project OpenClinica by OpenClinica.
the class ListStudySubjectsServlet method createTable.
private void createTable() {
ListStudySubjectTableFactory factory = new ListStudySubjectTableFactory(showMoreLink);
factory.setStudyEventDefinitionDao(getStudyEventDefinitionDao());
factory.setSubjectDAO(getSubjectDAO());
factory.setStudySubjectDAO(getStudySubjectDAO());
factory.setStudyEventDAO(getStudyEventDAO());
factory.setStudyBean(currentStudy);
factory.setStudyGroupClassDAO(getStudyGroupClassDAO());
factory.setSubjectGroupMapDAO(getSubjectGroupMapDAO());
factory.setStudyDAO(getStudyDAO());
factory.setCurrentRole(currentRole);
factory.setCurrentUser(ub);
factory.setEventCRFDAO(getEventCRFDAO());
factory.setEventDefintionCRFDAO(getEventDefinitionCRFDAO());
factory.setStudyGroupDAO(getStudyGroupDAO());
factory.setStudyParameterValueDAO(getStudyParameterValueDAO());
String findSubjectsHtml = factory.createTable(request, response).render();
request.setAttribute("findSubjectsHtml", findSubjectsHtml);
// A. Hamid.
// For event definitions and group class list in the add subject popup
request.setAttribute("allDefsArray", super.getEventDefinitionsByCurrentStudy());
request.setAttribute("studyGroupClasses", super.getStudyGroupClassesByCurrentStudy());
FormDiscrepancyNotes discNotes = new FormDiscrepancyNotes();
session.setAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME, discNotes);
forwardPage(Page.LIST_STUDY_SUBJECTS);
}
Also used :
FormDiscrepancyNotes(org.akaza.openclinica.control.form.FormDiscrepancyNotes)
Example 7 with FormDiscrepancyNotes
use of org.akaza.openclinica.control.form.FormDiscrepancyNotes in project OpenClinica by OpenClinica.
the class ViewDiscrepancyNoteServlet method processRequest.
@Override
@SuppressWarnings("unchecked")
protected void processRequest() throws Exception {
FormProcessor fp = new FormProcessor(request);
int eventCRFId = fp.getInt(CreateDiscrepancyNoteServlet.EVENT_CRF_ID);
request.setAttribute(CreateDiscrepancyNoteServlet.EVENT_CRF_ID, new Integer(eventCRFId));
request.setAttribute(DIS_TYPES, DiscrepancyNoteType.list);
if (currentRole.getRole().equals(Role.RESEARCHASSISTANT) || currentRole.getRole().equals(Role.RESEARCHASSISTANT2) || currentRole.getRole().equals(Role.INVESTIGATOR)) {
ArrayList<ResolutionStatus> resStatuses = new ArrayList();
resStatuses.add(ResolutionStatus.UPDATED);
resStatuses.add(ResolutionStatus.RESOLVED);
request.setAttribute(RES_STATUSES, resStatuses);
// it's for parentDNId is null or 0
request.setAttribute(WHICH_RES_STATUSES, "22");
ArrayList<ResolutionStatus> resStatuses2 = new ArrayList<ResolutionStatus>();
resStatuses2.add(ResolutionStatus.OPEN);
resStatuses2.add(ResolutionStatus.RESOLVED);
request.setAttribute(RES_STATUSES2, resStatuses2);
List<DiscrepancyNoteType> types2 = new ArrayList<DiscrepancyNoteType>(DiscrepancyNoteType.list);
types2.remove(DiscrepancyNoteType.QUERY);
request.setAttribute(DIS_TYPES2, types2);
} else if (currentRole.getRole().equals(Role.MONITOR)) {
ArrayList<ResolutionStatus> resStatuses = new ArrayList();
resStatuses.add(ResolutionStatus.OPEN);
resStatuses.add(ResolutionStatus.UPDATED);
resStatuses.add(ResolutionStatus.CLOSED);
request.setAttribute(RES_STATUSES, resStatuses);
request.setAttribute(WHICH_RES_STATUSES, "1");
ArrayList<DiscrepancyNoteType> types2 = new ArrayList<DiscrepancyNoteType>();
types2.add(DiscrepancyNoteType.QUERY);
request.setAttribute(DIS_TYPES2, types2);
} else {
// Role.STUDYDIRECTOR Role.COORDINATOR
List<ResolutionStatus> resStatuses = new ArrayList<ResolutionStatus>(ResolutionStatus.list);
resStatuses.remove(ResolutionStatus.NOT_APPLICABLE);
request.setAttribute(RES_STATUSES, resStatuses);
;
// it's for parentDNId is null or 0 and FVC
request.setAttribute(WHICH_RES_STATUSES, "2");
ArrayList<ResolutionStatus> resStatuses2 = new ArrayList<ResolutionStatus>();
resStatuses2.add(ResolutionStatus.OPEN);
resStatuses2.add(ResolutionStatus.RESOLVED);
request.setAttribute(RES_STATUSES2, resStatuses2);
}
// logic from CreateDiscrepancyNoteServlet
request.setAttribute("unlock", "0");
fp.getBoolean(IS_REASON_FOR_CHANGE);
fp.getBoolean(ERROR_FLAG);
String monitor = fp.getString("monitor");
// } else if ("1".equalsIgnoreCase(monitor)) {// change to allow user to
if ("1".equalsIgnoreCase(monitor)) {
// change to allow user to
// enter note for all items,
// not just blank items
request.setAttribute(CAN_MONITOR, "1");
request.setAttribute("monitor", monitor);
} else {
request.setAttribute(CAN_MONITOR, "0");
}
Boolean fromBox = fp.getBoolean(FROM_BOX);
if (fromBox == null || !fromBox) {
session.removeAttribute(BOX_TO_SHOW);
session.removeAttribute(BOX_DN_MAP);
session.removeAttribute(AUTOVIEWS);
}
Boolean refresh = fp.getBoolean("refresh");
request.setAttribute("refresh", refresh + "");
String ypos = fp.getString("y");
if (ypos == null || ypos.length() == 0) {
ypos = "0";
}
request.setAttribute("y", ypos);
DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(sm.getDataSource());
int entityId = fp.getInt(ENTITY_ID, true);
String name = fp.getString(ENTITY_TYPE, true);
String column = fp.getString(ENTITY_COLUMN, true);
String field = fp.getString(ENTITY_FIELD, true);
String isLocked = fp.getString(LOCKED_FLAG);
if (!StringUtil.isBlank(isLocked) && "yes".equalsIgnoreCase(isLocked)) {
request.setAttribute(LOCKED_FLAG, "yes");
} else {
request.setAttribute(LOCKED_FLAG, "no");
}
DateFormat dateFormatter = DateFormat.getDateInstance(DateFormat.DEFAULT, locale);
int subjectId = fp.getInt(CreateDiscrepancyNoteServlet.SUBJECT_ID, true);
int itemId = fp.getInt(CreateDiscrepancyNoteServlet.ITEM_ID, true);
StudySubjectBean ssub = new StudySubjectBean();
if (subjectId > 0) {
StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
ssub = (StudySubjectBean) ssdao.findByPK(subjectId);
request.setAttribute("noteSubject", ssub);
}
ItemBean item = new ItemBean();
if (itemId > 0) {
ItemDAO idao = new ItemDAO(sm.getDataSource());
item = (ItemBean) idao.findByPK(itemId);
request.setAttribute("item", item);
request.setAttribute("entityName", item.getName());
}
ItemDataBean itemData = new ItemDataBean();
SimpleDateFormat sdf = new SimpleDateFormat("dd-MMM-yyyy");
int preUserId = 0;
if (!StringUtil.isBlank(name)) {
if ("itemData".equalsIgnoreCase(name)) {
ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
itemData = (ItemDataBean) iddao.findByPK(entityId);
request.setAttribute("entityValue", itemData.getValue());
request.setAttribute("entityName", item.getName());
EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
EventCRFBean ec = (EventCRFBean) ecdao.findByPK(itemData.getEventCRFId());
preUserId = ec.getOwnerId() > 0 ? ec.getOwnerId() : 0;
request.setAttribute("entityCreatedDate", sdf.format(ec.getCreatedDate()));
StudyEventDAO sed = new StudyEventDAO(sm.getDataSource());
StudyEventBean se = (StudyEventBean) sed.findByPK(ec.getStudyEventId());
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
StudyEventDefinitionBean sedb = (StudyEventDefinitionBean) seddao.findByPK(se.getStudyEventDefinitionId());
se.setName(sedb.getName());
request.setAttribute("studyEvent", se);
CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
CRFVersionBean cv = (CRFVersionBean) cvdao.findByPK(ec.getCRFVersionId());
CRFDAO cdao = new CRFDAO(sm.getDataSource());
CRFBean crf = (CRFBean) cdao.findByPK(cv.getCrfId());
request.setAttribute("crf", crf);
} else if ("studySub".equalsIgnoreCase(name)) {
StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
ssub = (StudySubjectBean) ssdao.findByPK(entityId);
SubjectDAO sdao = new SubjectDAO(sm.getDataSource());
SubjectBean sub = (SubjectBean) sdao.findByPK(ssub.getSubjectId());
request.setAttribute("noteSubject", ssub);
if (!StringUtil.isBlank(column)) {
if ("enrollment_date".equalsIgnoreCase(column)) {
if (ssub.getEnrollmentDate() != null) {
request.setAttribute("entityValue", dateFormatter.format(ssub.getEnrollmentDate()));
}
request.setAttribute("entityName", resword.getString("enrollment_date"));
} else if ("gender".equalsIgnoreCase(column)) {
request.setAttribute("entityValue", sub.getGender() + "");
request.setAttribute("entityName", resword.getString("gender"));
} else if ("date_of_birth".equalsIgnoreCase(column)) {
if (sub.getDateOfBirth() != null) {
request.setAttribute("entityValue", dateFormatter.format(sub.getDateOfBirth()));
}
request.setAttribute("entityName", resword.getString("date_of_birth"));
} else if ("unique_identifier".equalsIgnoreCase(column)) {
if (sub.getUniqueIdentifier() != null) {
request.setAttribute("entityValue", sub.getUniqueIdentifier());
}
request.setAttribute("entityName", resword.getString("unique_identifier"));
}
}
preUserId = ssub.getOwnerId() > 0 ? ssub.getOwnerId() : 0;
request.setAttribute("entityCreatedDate", sdf.format(ssub.getCreatedDate()));
} else if ("subject".equalsIgnoreCase(name)) {
SubjectDAO sdao = new SubjectDAO(sm.getDataSource());
SubjectBean sub = (SubjectBean) sdao.findByPK(entityId);
// be caution: here for subject, noteSubject is SubjectBean and
// label is unique_identifier
sub.setLabel(sub.getUniqueIdentifier());
request.setAttribute("noteSubject", sub);
if (!StringUtil.isBlank(column)) {
if ("gender".equalsIgnoreCase(column)) {
request.setAttribute("entityValue", ssub.getGender() + "");
request.setAttribute("entityName", resword.getString("gender"));
} else if ("date_of_birth".equalsIgnoreCase(column)) {
if (sub.getDateOfBirth() != null) {
request.setAttribute("entityValue", dateFormatter.format(sub.getDateOfBirth()));
}
request.setAttribute("entityName", resword.getString("date_of_birth"));
} else if ("unique_identifier".equalsIgnoreCase(column)) {
request.setAttribute("entityValue", sub.getUniqueIdentifier());
request.setAttribute("entityName", resword.getString("unique_identifier"));
}
}
preUserId = sub.getOwnerId() > 0 ? sub.getOwnerId() : 0;
request.setAttribute("entityCreatedDate", sdf.format(sub.getCreatedDate()));
} else if ("studyEvent".equalsIgnoreCase(name)) {
StudyEventDAO sed = new StudyEventDAO(sm.getDataSource());
StudyEventBean se = (StudyEventBean) sed.findByPK(entityId);
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
StudyEventDefinitionBean sedb = (StudyEventDefinitionBean) seddao.findByPK(se.getStudyEventDefinitionId());
se.setName(sedb.getName());
request.setAttribute("studyEvent", se);
request.setAttribute("noteSubject", new StudySubjectDAO(sm.getDataSource()).findByPK(se.getStudySubjectId()));
if (!StringUtil.isBlank(column)) {
if ("location".equalsIgnoreCase(column)) {
request.setAttribute("entityValue", se.getLocation());
request.setAttribute("entityName", resword.getString("location"));
} else if ("start_date".equalsIgnoreCase(column)) {
if (se.getDateStarted() != null) {
request.setAttribute("entityValue", dateFormatter.format(se.getDateStarted()));
}
request.setAttribute("entityName", resword.getString("start_date"));
} else if ("end_date".equalsIgnoreCase(column)) {
if (se.getDateEnded() != null) {
request.setAttribute("entityValue", dateFormatter.format(se.getDateEnded()));
}
request.setAttribute("entityName", resword.getString("end_date"));
}
}
preUserId = se.getOwnerId() > 0 ? se.getOwnerId() : 0;
request.setAttribute("entityCreatedDate", sdf.format(se.getCreatedDate()));
} else if ("eventCrf".equalsIgnoreCase(name)) {
EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
EventCRFBean ec = (EventCRFBean) ecdao.findByPK(entityId);
if (!StringUtil.isBlank(column)) {
if ("date_interviewed".equals(column)) {
if (ec.getDateInterviewed() != null) {
request.setAttribute("entityValue", dateFormatter.format(ec.getDateInterviewed()));
}
request.setAttribute("entityName", resword.getString("date_interviewed"));
} else if ("interviewer_name".equals(column)) {
request.setAttribute("entityValue", ec.getInterviewerName());
request.setAttribute("entityName", resword.getString("interviewer_name"));
}
}
setupStudyEventCRFAttributes(ec);
preUserId = ec.getOwnerId() > 0 ? ec.getOwnerId() : 0;
request.setAttribute("entityCreatedDate", sdf.format(ec.getCreatedDate()));
}
}
boolean writeToDB = fp.getBoolean(CreateDiscrepancyNoteServlet.WRITE_TO_DB, true);
HashMap<Integer, Integer> autoviews = (HashMap<Integer, Integer>) session.getAttribute(AUTOVIEWS);
autoviews = autoviews == null ? new HashMap<Integer, Integer>() : autoviews;
HashMap<Integer, DiscrepancyNoteBean> boxDNMap = (HashMap<Integer, DiscrepancyNoteBean>) session.getAttribute(BOX_DN_MAP);
if (boxDNMap == null || !boxDNMap.containsKey(0)) {
boxDNMap = new HashMap<Integer, DiscrepancyNoteBean>();
// initialize dn for a new thread
DiscrepancyNoteBean dnb = new DiscrepancyNoteBean();
if (currentRole.getRole().equals(Role.RESEARCHASSISTANT) || currentRole.getRole().equals(Role.RESEARCHASSISTANT2) || currentRole.getRole().equals(Role.INVESTIGATOR)) {
dnb.setDiscrepancyNoteTypeId(DiscrepancyNoteType.ANNOTATION.getId());
dnb.setResolutionStatusId(ResolutionStatus.NOT_APPLICABLE.getId());
autoviews.put(0, 0);
// request.setAttribute("autoView", "0");
} else {
dnb.setDiscrepancyNoteTypeId(DiscrepancyNoteType.QUERY.getId());
dnb.setAssignedUserId(preUserId);
autoviews.put(0, 1);
// request.setAttribute("autoView", "1");
}
boxDNMap.put(0, dnb);
} else if (boxDNMap.containsKey(0)) {
int dnTypeId = boxDNMap.get(0).getDiscrepancyNoteTypeId();
autoviews.put(0, dnTypeId == 3 ? 1 : 0);
}
if (boxDNMap.containsKey(0)) {
int dnTypeId0 = boxDNMap.get(0).getDiscrepancyNoteTypeId();
if (dnTypeId0 == 2 || dnTypeId0 == 4) {
request.setAttribute("typeID0", dnTypeId0 + "");
}
}
// request.setAttribute("enterData", enterData);
request.setAttribute("monitor", monitor);
request.setAttribute(ENTITY_ID, entityId + "");
request.setAttribute(ENTITY_TYPE, name);
request.setAttribute(ENTITY_FIELD, field);
request.setAttribute(ENTITY_COLUMN, column);
request.setAttribute(CreateDiscrepancyNoteServlet.WRITE_TO_DB, writeToDB ? "1" : "0");
ArrayList notes = (ArrayList) dndao.findAllByEntityAndColumn(name, entityId, column);
if (notes.size() > 0) {
notes.get(0);
// @pgawade 21-May-2011 Corrected the condition to throw no access
// error
StudyDAO studyDAO = new StudyDAO(sm.getDataSource());
int parentStudyForNoteSub = 0;
// @pgawade #9801: 07-June-2011 corrected the way to get study
// subject id associated with discrepancy note
// int noteSubId = note.getOwnerId();
StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
// StudySubjectBean notessub = (StudySubjectBean)
// ssdao.findByPK(noteSubId);
StudySubjectBean notessub = (StudySubjectBean) ssdao.findByPK(subjectId);
StudyBean studyBeanSub = (StudyBean) studyDAO.findByPK(notessub.getStudyId());
if (null != studyBeanSub) {
parentStudyForNoteSub = studyBeanSub.getParentStudyId();
}
if (notessub.getStudyId() != currentStudy.getId() && currentStudy.getId() != parentStudyForNoteSub) {
addPageMessage(noAccessMessage);
throw new InsufficientPermissionException(Page.MENU_SERVLET, exceptionName, "1");
}
}
FormDiscrepancyNotes newNotes = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
Map<Integer, DiscrepancyNoteBean> noteTree = new LinkedHashMap<Integer, DiscrepancyNoteBean>();
String session_key = eventCRFId + "_" + field;
ArrayList newFieldNotes = null;
if (newNotes != null && (!newNotes.getNotes(field).isEmpty() || !newNotes.getNotes(session_key).isEmpty())) {
newFieldNotes = newNotes.getNotes(field);
if (newFieldNotes == null || newFieldNotes.size() == 0) {
newFieldNotes = newNotes.getNotes(session_key);
}
// System.out.println("how many notes:" + newFieldNotes.size());
for (int i = 0; i < newFieldNotes.size(); i++) {
DiscrepancyNoteBean note = (DiscrepancyNoteBean) newFieldNotes.get(i);
note.setLastUpdator(ub);
note.setLastDateUpdated(new Date());
note.setDisType(DiscrepancyNoteType.get(note.getDiscrepancyNoteTypeId()));
note.setResStatus(ResolutionStatus.get(note.getResolutionStatusId()));
note.setSaved(false);
if (itemId > 0) {
note.setEntityName(item.getName());
note.setEntityValue(itemData.getValue());
}
note.setSubjectName(ssub.getName());
note.setEntityType(name);
int pId = note.getParentDnId();
if (pId == 0) {
// we can only keep one unsaved note because
// note.id == 0
noteTree.put(note.getId(), note);
}
}
for (int i = 0; i < newFieldNotes.size(); i++) {
DiscrepancyNoteBean note = (DiscrepancyNoteBean) newFieldNotes.get(i);
int pId = note.getParentDnId();
if (pId > 0) {
note.setSaved(false);
note.setLastUpdator(ub);
note.setLastDateUpdated(new Date());
note.setEntityName(item.getName());
note.setSubjectName(ssub.getName());
note.setEntityType(name);
note.setDisType(DiscrepancyNoteType.get(note.getDiscrepancyNoteTypeId()));
note.setResStatus(ResolutionStatus.get(note.getResolutionStatusId()));
DiscrepancyNoteBean parent = noteTree.get(new Integer(pId));
if (parent != null) {
parent.getChildren().add(note);
}
}
}
}
UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
HashMap<Integer, String> fvcInitAssigns = new HashMap<Integer, String>();
for (int i = 0; i < notes.size(); i++) {
DiscrepancyNoteBean note = (DiscrepancyNoteBean) notes.get(i);
note.setColumn(column);
note.setEntityId(entityId);
note.setEntityType(name);
note.setField(field);
Date lastUpdatedDate = note.getCreatedDate();
UserAccountBean lastUpdator = (UserAccountBean) udao.findByPK(note.getOwnerId());
note.setLastUpdator(lastUpdator);
note.setLastDateUpdated(lastUpdatedDate);
int pId = note.getParentDnId();
note.setDisType(DiscrepancyNoteType.get(note.getDiscrepancyNoteTypeId()));
note.setResStatus(ResolutionStatus.get(note.getResolutionStatusId()));
if (pId == 0) {
noteTree.put(new Integer(note.getId()), note);
}
}
for (int i = 0; i < notes.size(); i++) {
DiscrepancyNoteBean note = (DiscrepancyNoteBean) notes.get(i);
int pId = note.getParentDnId();
if (itemId > 0) {
note.setEntityName(item.getName());
note.setEntityValue(itemData.getValue());
}
note.setSubjectName(ssub.getName());
note.setEntityType(name);
Date lastUpdatedDate = note.getCreatedDate();
UserAccountBean lastUpdator = (UserAccountBean) udao.findByPK(note.getOwnerId());
note.setLastUpdator(lastUpdator);
note.setLastDateUpdated(lastUpdatedDate);
note.setDisType(DiscrepancyNoteType.get(note.getDiscrepancyNoteTypeId()));
note.setResStatus(ResolutionStatus.get(note.getResolutionStatusId()));
if (pId > 0) {
DiscrepancyNoteBean parent = noteTree.get(new Integer(pId));
if (parent != null) {
parent.getChildren().add(note);
if (!note.getCreatedDate().before(parent.getLastDateUpdated())) {
parent.setLastDateUpdated(note.getCreatedDate());
}
if (note.getDiscrepancyNoteTypeId() == 1 && note.getAssignedUserId() > 0) {
int ownerId = note.getOwnerId();
if (fvcInitAssigns.containsKey(pId)) {
String f = fvcInitAssigns.get(pId);
String fn = note.getId() + "." + ownerId;
if (fn.compareTo(f) < 0) {
fvcInitAssigns.put(pId, fn);
}
} else {
fvcInitAssigns.put(pId, note.getId() + "." + ownerId);
}
}
}
}
}
Set parents = noteTree.keySet();
Iterator it = parents.iterator();
while (it.hasNext()) {
Integer key = (Integer) it.next();
DiscrepancyNoteBean note = noteTree.get(key);
note.setNumChildren(note.getChildren().size());
note.setEntityType(name);
if (!boxDNMap.containsKey(key)) {
DiscrepancyNoteBean dn = new DiscrepancyNoteBean();
dn.setId(key);
int dnTypeId = note.getDiscrepancyNoteTypeId();
dn.setDiscrepancyNoteTypeId(dnTypeId);
if (dnTypeId == 3) {
// JsonQuery
dn.setAssignedUserId(note.getOwnerId());
} else if (dnTypeId == 1) {
// FVC
if (fvcInitAssigns.containsKey(key)) {
String[] s = fvcInitAssigns.get(key).split("\\.");
int i = Integer.parseInt(s.length == 2 ? s[1].trim() : "0");
dn.setAssignedUserId(i);
}
}
Role r = currentRole.getRole();
// currentStudy.getId() != currentStudy.getParentStudyId()) {
if (r.equals(Role.RESEARCHASSISTANT) || r.equals(Role.RESEARCHASSISTANT2) || r.equals(Role.INVESTIGATOR)) {
if (dn.getDiscrepancyNoteTypeId() == DiscrepancyNoteType.QUERY.getId() && note.getResStatus().getId() == ResolutionStatus.UPDATED.getId()) {
dn.setResolutionStatusId(ResolutionStatus.UPDATED.getId());
} else {
dn.setResolutionStatusId(ResolutionStatus.RESOLVED.getId());
}
if (dn.getAssignedUserId() > 0) {
autoviews.put(key, 1);
} else {
autoviews.put(key, 0);
}
// copied from CreateDiscrepancyNoteServlet
// request.setAttribute("autoView", "0");
// hide the panel, tbh
} else {
if (note.getResStatus().getId() == ResolutionStatus.RESOLVED.getId()) {
dn.setResolutionStatusId(ResolutionStatus.CLOSED.getId());
} else if (note.getResStatus().getId() == ResolutionStatus.CLOSED.getId()) {
dn.setResolutionStatusId(ResolutionStatus.UPDATED.getId());
} else if (r.equals(Role.MONITOR)) {
dn.setResolutionStatusId(ResolutionStatus.UPDATED.getId());
} else if (dn.getDiscrepancyNoteTypeId() == 1) {
dn.setResolutionStatusId(ResolutionStatus.RESOLVED.getId());
} else {
dn.setResolutionStatusId(ResolutionStatus.UPDATED.getId());
}
autoviews.put(key, 1);
if (dn.getAssignedUserId() > 0) {
} else {
dn.setAssignedUserId(preUserId);
}
}
boxDNMap.put(key, dn);
}
}
session.setAttribute(BOX_DN_MAP, boxDNMap);
session.setAttribute(AUTOVIEWS, autoviews);
// noteTree is a Hashmap mapping note id to a parent note, with all the
// child notes
// stored in the children List.
// BWP 3029>>make sure the parent note has an updated resolution status
// and
// updated date
fixStatusUpdatedDate(noteTree);
request.setAttribute(DIS_NOTES, noteTree);
// copied from CreatediscrepancyNoteServlet generateUserAccounts
StudyDAO studyDAO = new StudyDAO(sm.getDataSource());
StudyBean subjectStudy = studyDAO.findByStudySubjectId(subjectId);
int studyId = currentStudy.getId();
ArrayList<UserAccountBean> userAccounts = new ArrayList();
if (currentStudy.getParentStudyId() > 0) {
userAccounts = udao.findAllUsersByStudyOrSite(studyId, currentStudy.getParentStudyId(), subjectId);
} else if (subjectStudy.getParentStudyId() > 0) {
userAccounts = udao.findAllUsersByStudyOrSite(subjectStudy.getId(), subjectStudy.getParentStudyId(), subjectId);
} else {
userAccounts = udao.findAllUsersByStudyOrSite(studyId, 0, subjectId);
}
request.setAttribute(USER_ACCOUNTS, userAccounts);
request.setAttribute(VIEW_DN_LINK, this.getPageServletFileName());
// audit log items (from ViewItemAuditLogServlet.java)
AuditDAO adao = new AuditDAO(sm.getDataSource());
if (name.equalsIgnoreCase("studysub")) {
name = "study_subject";
} else if (name.equalsIgnoreCase("eventcrf")) {
name = "event_crf";
} else if (name.equalsIgnoreCase("studyevent")) {
name = "study_event";
} else if (name.equalsIgnoreCase("itemdata")) {
name = "item_data";
}
ArrayList itemAuditEvents = adao.findItemAuditEvents(entityId, name);
request.setAttribute("itemAudits", itemAuditEvents);
forwardPage(Page.VIEW_DISCREPANCY_NOTE);
}
Also used :
ItemBean(org.akaza.openclinica.bean.submit.ItemBean)
ItemDAO(org.akaza.openclinica.dao.submit.ItemDAO)
HashMap(java.util.HashMap)
LinkedHashMap(java.util.LinkedHashMap)
ArrayList(java.util.ArrayList)
StudyEventDefinitionBean(org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean)
StudyEventBean(org.akaza.openclinica.bean.managestudy.StudyEventBean)
LinkedHashMap(java.util.LinkedHashMap)
ResolutionStatus(org.akaza.openclinica.bean.core.ResolutionStatus)
EventCRFBean(org.akaza.openclinica.bean.submit.EventCRFBean)
ItemDataBean(org.akaza.openclinica.bean.submit.ItemDataBean)
StudyEventDAO(org.akaza.openclinica.dao.managestudy.StudyEventDAO)
ArrayList(java.util.ArrayList)
List(java.util.List)
StudyDAO(org.akaza.openclinica.dao.managestudy.StudyDAO)
DiscrepancyNoteDAO(org.akaza.openclinica.dao.managestudy.DiscrepancyNoteDAO)
EventCRFDAO(org.akaza.openclinica.dao.submit.EventCRFDAO)
CRFDAO(org.akaza.openclinica.dao.admin.CRFDAO)
CRFVersionDAO(org.akaza.openclinica.dao.submit.CRFVersionDAO)
FormDiscrepancyNotes(org.akaza.openclinica.control.form.FormDiscrepancyNotes)
FormProcessor(org.akaza.openclinica.control.form.FormProcessor)
StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean)
UserAccountDAO(org.akaza.openclinica.dao.login.UserAccountDAO)
EventCRFBean(org.akaza.openclinica.bean.submit.EventCRFBean)
CRFBean(org.akaza.openclinica.bean.admin.CRFBean)
Role(org.akaza.openclinica.bean.core.Role)
SubjectBean(org.akaza.openclinica.bean.submit.SubjectBean)
StudySubjectBean(org.akaza.openclinica.bean.managestudy.StudySubjectBean)
StudySubjectBean(org.akaza.openclinica.bean.managestudy.StudySubjectBean)
StudyEventDefinitionDAO(org.akaza.openclinica.dao.managestudy.StudyEventDefinitionDAO)
DiscrepancyNoteBean(org.akaza.openclinica.bean.managestudy.DiscrepancyNoteBean)
Set(java.util.Set)
StudySubjectDAO(org.akaza.openclinica.dao.managestudy.StudySubjectDAO)
SubjectDAO(org.akaza.openclinica.dao.submit.SubjectDAO)
InsufficientPermissionException(org.akaza.openclinica.web.InsufficientPermissionException)
ItemDataDAO(org.akaza.openclinica.dao.submit.ItemDataDAO)
AuditDAO(org.akaza.openclinica.dao.admin.AuditDAO)
DiscrepancyNoteType(org.akaza.openclinica.bean.core.DiscrepancyNoteType)
UserAccountBean(org.akaza.openclinica.bean.login.UserAccountBean)
Iterator(java.util.Iterator)
EventCRFDAO(org.akaza.openclinica.dao.submit.EventCRFDAO)
StudySubjectDAO(org.akaza.openclinica.dao.managestudy.StudySubjectDAO)
Date(java.util.Date)
SimpleDateFormat(java.text.SimpleDateFormat)
DateFormat(java.text.DateFormat)
CRFVersionBean(org.akaza.openclinica.bean.submit.CRFVersionBean)
SimpleDateFormat(java.text.SimpleDateFormat)
Example 8 with FormDiscrepancyNotes
use of org.akaza.openclinica.control.form.FormDiscrepancyNotes in project OpenClinica by OpenClinica.
the class UpdateSubjectServlet method confirm.
/**
* Processes 'confirm' request, validate the subject object
*
* @throws Exception
*/
private void confirm(SubjectBean subject, int subjectId) throws Exception {
FormDiscrepancyNotes discNotes = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
if (discNotes == null) {
discNotes = new FormDiscrepancyNotes();
}
DiscrepancyValidator v = new DiscrepancyValidator(request, discNotes);
FormProcessor fp = new FormProcessor(request);
if (currentStudy.getStudyParameterConfig().getPersonIdShownOnCRF().equals("true")) {
v.addValidation("uniqueIdentifier", Validator.LENGTH_NUMERIC_COMPARISON, NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO, 255);
v.alwaysExecuteLastValidation("uniqueIdentifier");
}
String personId = fp.getString(INPUT_UNIQUE_IDENTIFIER);
if (personId.contains("<") || personId.contains(">")) {
v.addValidation("uniqueIdentifier", Validator.DOES_NOT_CONTAIN_HTML_LESSTHAN_GREATERTHAN_ELEMENTS);
}
if (currentStudy.getStudyParameterConfig().getCollectDob().equals("1")) {
if (!StringUtil.isBlank(fp.getString(DATE_DOB))) {
v.addValidation(DATE_DOB, Validator.IS_A_DATE);
v.alwaysExecuteLastValidation(DATE_DOB);
} else if (StringUtil.isBlank(fp.getString(DATE_DOB)) && subject.getDateOfBirth() != null) {
Validator.addError(errors, DATE_DOB, resexception.getString("field_not_blank"));
}
if (fp.getDate(DATE_DOB) != null) {
subject.setDateOfBirth(fp.getDate(DATE_DOB));
String converted_date = local_df.format(subject.getDateOfBirth());
request.setAttribute(DATE_DOB_TO_SAVE, converted_date);
}
} else if (currentStudy.getStudyParameterConfig().getCollectDob().equals("2")) {
if (!StringUtils.isBlank(fp.getString(DATE_DOB))) {
// if DOB was not updated (and originally entered as a full day, post it as is
String submitted_date = fp.getString(DATE_DOB);
boolean isTheSameDate = false;
try {
Date fakeDOB = yformat.parse(submitted_date);
if (subject.getDateOfBirth() != null) {
if (subject.getDateOfBirth().getYear() == (fakeDOB.getYear())) {
isTheSameDate = true;
String converted_date = yformat.format(subject.getDateOfBirth());
request.setAttribute(DATE_DOB_TO_SAVE, converted_date);
}
}
} catch (ParseException pe) {
logger.debug("update subject: cannot convert date " + submitted_date);
//I am putting on Pradnya's request the link to code review with a long discussion
//about what type of logging should be here: enjoy
//https://dev.openclinica.com/crucible/cru/OC-117
}
if (!isTheSameDate) {
v.addValidation(DATE_DOB, Validator.IS_AN_INTEGER);
v.alwaysExecuteLastValidation(DATE_DOB);
v.addValidation(DATE_DOB, Validator.COMPARES_TO_STATIC_VALUE, NumericComparisonOperator.GREATER_THAN_OR_EQUAL_TO, 1000);
// get today's year
Date today = new Date();
Calendar c = Calendar.getInstance();
c.setTime(today);
int currentYear = c.get(Calendar.YEAR);
v.addValidation(DATE_DOB, Validator.COMPARES_TO_STATIC_VALUE, NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO, currentYear);
int yob = fp.getInt(DATE_DOB);
Date fakeDate = new Date(yob);
String dobString = yformat.format(fakeDate);
try {
Date fakeDOB = yformat.parse(dobString);
if (yob != 0) {
subject.setDateOfBirth(fakeDOB);
}
request.setAttribute(DATE_DOB_TO_SAVE, yob);
} catch (ParseException pe) {
logger.debug("Parse exception happened.");
//I am putting on Pradnya's request the link to code review with a long discussion
//about what type of logging should be here: enjoy
//https://dev.openclinica.com/crucible/cru/OC-117
Validator.addError(errors, DATE_DOB, resexception.getString("please_enter_a_valid_year_birth"));
}
}
request.setAttribute(DATE_DOB, fp.getString(DATE_DOB));
} else {
Validator.addError(errors, DATE_DOB, resexception.getString("field_not_blank"));
}
}
errors = v.validate();
// uniqueIdentifier must be unique in the system
if (currentStudy.getStudyParameterConfig().getSubjectPersonIdRequired().equals("required") || currentStudy.getStudyParameterConfig().getSubjectPersonIdRequired().equals("optional")) {
String uniqueIdentifier = fp.getString("uniqueIdentifier");
if (currentStudy.getStudyParameterConfig().getSubjectPersonIdRequired().equals("required") && !(subject.getUniqueIdentifier() == null || subject.getUniqueIdentifier().isEmpty()) && (uniqueIdentifier == null || uniqueIdentifier.isEmpty())) {
Validator.addError(errors, "uniqueIdentifier", resexception.getString("field_not_blank"));
}
if (uniqueIdentifier != null && !uniqueIdentifier.isEmpty()) {
if (uniqueIdentifier.length() > 255) {
String descr = resexception.getString("input_provided_is_not") + NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO.getDescription() + " 255 " + resword.getString("characters_long") + ".";
Validator.addError(errors, "uniqueIdentifier", descr);
}
SubjectDAO sdao = new SubjectDAO(sm.getDataSource());
SubjectBean sub1 = (SubjectBean) sdao.findAnotherByIdentifier(uniqueIdentifier, subject.getId());
if (sub1.getId() > 0) {
Validator.addError(errors, "uniqueIdentifier", resexception.getString("person_ID_used_by_another_choose_unique"));
}
SubjectBean subjectWithSameId = sdao.findByUniqueIdentifier(uniqueIdentifier);
if (subjectWithSameId.isActive() && subjectWithSameId.getId() != subject.getId()) {
Validator.addError(errors, "uniqueIdentifier", resexception.getString("another_assigned_this_ID_choose_unique"));
}
}
subject.setUniqueIdentifier(uniqueIdentifier);
}
if (!StringUtil.isBlank(fp.getString("gender"))) {
subject.setGender(fp.getString("gender").charAt(0));
} else {
if (currentStudy.getStudyParameterConfig().getGenderRequired().equals("true") && subject.getGender() != ' ') {
Validator.addError(errors, "gender", resexception.getString("field_not_blank"));
}
subject.setGender(' ');
}
request.setAttribute("subjectToUpdate", subject);
if (errors.isEmpty()) {
forwardPage(Page.UPDATE_SUBJECT_CONFIRM);
} else {
//I am putting on Pradnya's request the link to code review with a long discussion
//about what type of logging should be here: enjoy
//https://dev.openclinica.com/crucible/cru/OC-117
logger.error("update subject validation errors");
setInputMessages(errors);
setDNFlag(subjectId);
setLocalDOB(subject);
if (currentStudy.getStudyParameterConfig().getCollectDob().equals("2"))
request.setAttribute("localBirthDate", "");
forwardPage(Page.UPDATE_SUBJECT);
}
}
Also used :
SubjectBean(org.akaza.openclinica.bean.submit.SubjectBean)
DiscrepancyValidator(org.akaza.openclinica.control.form.DiscrepancyValidator)
FormDiscrepancyNotes(org.akaza.openclinica.control.form.FormDiscrepancyNotes)
FormProcessor(org.akaza.openclinica.control.form.FormProcessor)
SubjectDAO(org.akaza.openclinica.dao.submit.SubjectDAO)
Calendar(java.util.Calendar)
ParseException(java.text.ParseException)
Date(java.util.Date)
Example 9 with FormDiscrepancyNotes
use of org.akaza.openclinica.control.form.FormDiscrepancyNotes in project OpenClinica by OpenClinica.
the class ViewSectionDataEntryServlet method processRequest.
// BWP 01/08>>
@Override
public void processRequest(HttpServletRequest request, HttpServletResponse response) throws Exception {
FormProcessor fp = new FormProcessor(request);
StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
boolean isSubmitted = false;
EventDefinitionCRFBean edcb = (EventDefinitionCRFBean) request.getAttribute(EVENT_DEF_CRF_BEAN);
if (!fp.getString("exitTo").equals("")) {
request.setAttribute("exitTo", fp.getString("exitTo"));
}
int crfVersionId = fp.getInt("crfVersionId", true);
int sectionId = fp.getInt("sectionId");
int eventCRFId = fp.getInt(EVENT_CRF_ID, true);
int studySubjectId = fp.getInt("studySubjectId", true);
String action = fp.getString("action");
HttpSession session = request.getSession();
String fromResolvingNotes = fp.getString("fromResolvingNotes", true);
if (StringUtil.isBlank(fromResolvingNotes)) {
session.removeAttribute(ViewNotesServlet.WIN_LOCATION);
session.removeAttribute(ViewNotesServlet.NOTES_TABLE);
}
// Added for
request.setAttribute("studySubjectId", studySubjectId + "");
// Mantis
// Issue
// 2268
// Added
request.setAttribute("crfListPage", fp.getString("crfListPage"));
// for
// Mantis
// Issue
// 2268
// Added for
request.setAttribute("eventId", fp.getString("eventId"));
// Mantis
// Issue
// 2268
// YW <<
int sedId = fp.getInt("sedId");
request.setAttribute("sedId", sedId + "");
int crfId = fp.getInt("crfId");
// BWP>> ... try to get crfId from crfVersionId
if (crfId == 0 && crfVersionId > 0) {
CRFVersionDAO crfVDao = new CRFVersionDAO(getDataSource());
CRFVersionBean crvVBean = (CRFVersionBean) crfVDao.findByPK(crfVersionId);
if (crvVBean != null) {
crfId = crvVBean.getCrfId();
}
}
// YW >>
int eventDefinitionCRFId = fp.getInt("eventDefinitionCRFId");
EventDefinitionCRFDAO eventCrfDao = new EventDefinitionCRFDAO(getDataSource());
edcb = (EventDefinitionCRFBean) eventCrfDao.findByPK(eventDefinitionCRFId);
if (eventCRFId == 0 && edcb.getStudyId() != currentStudy.getParentStudyId() && edcb.getStudyId() != currentStudy.getId()) {
addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_study_contact_sysadmin"), request);
throw new InsufficientPermissionException(Page.MENU_SERVLET, resexception.getString("not_director"), "1");
}
if (crfId == 0 && eventDefinitionCRFId > 0) {
// eventCrfDao.findByPK(eventDefinitionCRFId);
if (edcb != null) {
crfId = edcb.getCrfId();
}
}
request.setAttribute("crfId", crfId + "");
request.setAttribute("eventDefinitionCRFId", eventDefinitionCRFId + "");
String printVersion = fp.getString("print");
// BWP>> this has to be removed for CRFs that do not display an
// interviewdate
// for a particular event
session.removeAttribute("presetValues");
EventCRFDAO ecdao = new EventCRFDAO(getDataSource());
SectionDAO sdao = new SectionDAO(getDataSource());
String age = "";
if (sectionId == 0 && crfVersionId == 0 && eventCRFId == 0) {
addPageMessage(respage.getString("please_choose_a_CRF_to_view"), request);
// forwardPage(Page.SUBMIT_DATA_SERVLET);
forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET, request, response);
// >> changed tbh, 06/2009
return;
}
if (studySubjectId > 0) {
StudySubjectDAO ssdao = new StudySubjectDAO(getDataSource());
StudySubjectBean sub = (StudySubjectBean) ssdao.findByPK(studySubjectId);
request.setAttribute("studySubject", sub);
}
if (eventCRFId > 0) {
// for event crf, the input crfVersionId from url =0
ecb = (EventCRFBean) ecdao.findByPK(eventCRFId);
StudyEventDAO sedao = new StudyEventDAO(getDataSource());
StudyEventBean event = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
// event.getSubjectEventStatus().getName());
if (event.getSubjectEventStatus().equals(SubjectEventStatus.LOCKED)) {
request.setAttribute("isLocked", "yes");
// System.out.println("this event crf is locked");
} else {
request.setAttribute("isLocked", "no");
}
if (studySubjectId <= 0) {
studySubjectId = event.getStudySubjectId();
request.setAttribute("studySubjectId", studySubjectId + "");
}
// Get the status/number of item discrepancy notes
DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(getDataSource());
ArrayList<DiscrepancyNoteBean> allNotes = new ArrayList<DiscrepancyNoteBean>();
List<DiscrepancyNoteBean> eventCrfNotes = new ArrayList<DiscrepancyNoteBean>();
List<DiscrepancyNoteThread> noteThreads = new ArrayList<DiscrepancyNoteThread>();
// if (eventCRFId > 0) {
// this method finds only parent notes
allNotes = dndao.findAllTopNotesByEventCRF(eventCRFId);
// add interviewer.jsp related notes to this Collection
eventCrfNotes = dndao.findOnlyParentEventCRFDNotesFromEventCRF(ecb);
if (!eventCrfNotes.isEmpty()) {
allNotes.addAll(eventCrfNotes);
// make sure a necessary request attribute "hasNameNote" is set
// properly
this.setAttributeForInterviewerDNotes(eventCrfNotes, request);
}
// }
// Create disc note threads out of the various notes
DiscrepancyNoteUtil dNoteUtil = new DiscrepancyNoteUtil();
noteThreads = dNoteUtil.createThreadsOfParents(allNotes, getDataSource(), currentStudy, null, -1, true);
// variables that provide values for the CRF discrepancy note header
int updatedNum = 0;
int openNum = 0;
int closedNum = 0;
int resolvedNum = 0;
int notAppNum = 0;
DiscrepancyNoteBean tempBean;
for (DiscrepancyNoteThread dnThread : noteThreads) {
/*
* 3014: do not count parent beans, only the last child disc
* note of the thread.
*/
tempBean = dnThread.getLinkedNoteList().getLast();
if (tempBean != null) {
if (ResolutionStatus.UPDATED.equals(tempBean.getResStatus())) {
updatedNum++;
} else if (ResolutionStatus.OPEN.equals(tempBean.getResStatus())) {
openNum++;
} else if (ResolutionStatus.CLOSED.equals(tempBean.getResStatus())) {
// if (dn.getParentDnId() > 0){
closedNum++;
// }
} else if (ResolutionStatus.RESOLVED.equals(tempBean.getResStatus())) {
// if (dn.getParentDnId() > 0){
resolvedNum++;
// }
} else if (ResolutionStatus.NOT_APPLICABLE.equals(tempBean.getResStatus())) {
notAppNum++;
}
}
}
request.setAttribute("updatedNum", updatedNum + "");
request.setAttribute("openNum", openNum + "");
request.setAttribute("closedNum", closedNum + "");
request.setAttribute("resolvedNum", resolvedNum + "");
request.setAttribute("notAppNum", notAppNum + "");
DisplayTableOfContentsBean displayBean = TableOfContentsServlet.getDisplayBean(ecb, getDataSource(), currentStudy);
// Make sure that the interviewDate in the eventCRF is properly
// formatted
// for viewSectionDataEntry.jsp --> interviewer.jsp
// int studyEventId = (Integer)request.getAttribute("studyEvent");
// SimpleDateFormat formatter = new SimpleDateFormat("MM/dd/yyyy");
//
Date tmpDate = displayBean.getEventCRF().getDateInterviewed();
String formattedInterviewerDate;
try {
DateFormat local_df = new SimpleDateFormat(resformat.getString("date_format_string"), ResourceBundleProvider.getLocale());
formattedInterviewerDate = local_df.format(tmpDate);
} catch (Exception e) {
formattedInterviewerDate = "";
}
HashMap presetVals = (HashMap) session.getAttribute("presetValues");
if (presetVals == null) {
presetVals = new HashMap();
session.setAttribute("presetValues", presetVals);
}
presetVals.put("interviewDate", formattedInterviewerDate);
request.setAttribute("toc", displayBean);
ArrayList sections = displayBean.getSections();
request.setAttribute("sectionNum", sections.size() + "");
if (!sections.isEmpty()) {
if (sectionId == 0) {
SectionBean firstSec = (SectionBean) sections.get(0);
sectionId = firstSec.getId();
}
} else {
addPageMessage(respage.getString("there_are_no_sections_ins_this_CRF"), request);
// forwardPage(Page.SUBMIT_DATA_SERVLET);
forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET, request, response);
// >> changed tbh, 06/2009
return;
}
} else if (crfVersionId > 0) {
// for viewing blank CRF
DisplayTableOfContentsBean displayBean = ViewTableOfContentServlet.getDisplayBean(getDataSource(), crfVersionId);
request.setAttribute("toc", displayBean);
ArrayList sections = displayBean.getSections();
request.setAttribute("sectionNum", sections.size() + "");
if (!sections.isEmpty()) {
if (sectionId == 0) {
SectionBean firstSec = (SectionBean) sections.get(0);
sectionId = firstSec.getId();
}
} else {
addPageMessage(respage.getString("there_are_no_sections_ins_this_CRF_version"), request);
if (eventCRFId == 0) {
forwardPage(Page.CRF_LIST_SERVLET, request, response);
} else {
// forwardPage(Page.SUBMIT_DATA_SERVLET);
forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET, request, response);
// >> changed tbh, 06/2009
}
return;
}
}
sb = (SectionBean) sdao.findByPK(sectionId);
if (eventCRFId == 0) {
ecb = new EventCRFBean();
ecb.setCRFVersionId(sb.getCRFVersionId());
if (currentStudy.getParentStudyId() > 0) {
// this is a site,find parent
StudyDAO studydao = new StudyDAO(getDataSource());
StudyBean parentStudy = (StudyBean) studydao.findByPK(currentStudy.getParentStudyId());
request.setAttribute("studyTitle", parentStudy.getName());
request.setAttribute("siteTitle", currentStudy.getName());
} else {
request.setAttribute("studyTitle", currentStudy.getName());
}
} else {
ecb = (EventCRFBean) ecdao.findByPK(eventCRFId);
request.setAttribute(INPUT_EVENT_CRF, ecb);
request.setAttribute(SECTION_BEAN, sb);
// This is the StudySubjectBean
StudySubjectDAO ssdao = new StudySubjectDAO(getDataSource());
StudySubjectBean sub = (StudySubjectBean) ssdao.findByPK(ecb.getStudySubjectId());
// This is the SubjectBean
SubjectDAO subjectDao = new SubjectDAO(getDataSource());
int subjectId = sub.getSubjectId();
int studyId = sub.getStudyId();
SubjectBean subject = (SubjectBean) subjectDao.findByPK(subjectId);
// Let us process the age
if (currentStudy.getStudyParameterConfig().getCollectDob().equals("1")) {
StudyEventDAO sedao = new StudyEventDAO(getDataSource());
StudyEventBean se = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(getDataSource());
StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(se.getStudyEventDefinitionId());
se.setStudyEventDefinition(sed);
request.setAttribute("studyEvent", se);
// YW 11-16-2007 enrollment-date is used for computing age
age = Utils.getInstacne().processAge(sub.getEnrollmentDate(), subject.getDateOfBirth());
}
// Get the study then the parent study
StudyDAO studydao = new StudyDAO(getDataSource());
StudyBean study = (StudyBean) studydao.findByPK(studyId);
if (study.getParentStudyId() > 0) {
// this is a site,find parent
StudyBean parentStudy = (StudyBean) studydao.findByPK(study.getParentStudyId());
request.setAttribute("studyTitle", parentStudy.getName());
request.setAttribute("siteTitle", study.getName());
} else {
request.setAttribute("studyTitle", study.getName());
}
request.setAttribute("studySubject", sub);
request.setAttribute("subject", subject);
request.setAttribute("age", age);
}
// FormBeanUtil formUtil = new FormBeanUtil();
// DisplaySectionBean newDisplayBean = new DisplaySectionBean();
boolean hasItemGroup = false;
// we will look into db to see if any repeating items for this CRF
// section
ItemGroupDAO igdao = new ItemGroupDAO(getDataSource());
List<ItemGroupBean> itemGroups = igdao.findLegitGroupBySectionId(sectionId);
if (!itemGroups.isEmpty()) {
hasItemGroup = true;
}
// if the List of DisplayFormGroups is empty, then the servlet defers to
// the prior method
// of generating a DisplaySectionBean for the application
DisplaySectionBean dsb;
// want to get displayBean with grouped and ungrouped items
request.setAttribute(EVENT_DEF_CRF_BEAN, edcb);
request.setAttribute(INPUT_EVENT_CRF, ecb);
request.setAttribute(SECTION_BEAN, sb);
dsb = super.getDisplayBean(hasItemGroup, false, request, isSubmitted);
StudySubjectDAO studySubjectDAO = new StudySubjectDAO(getDataSource());
StudyEventDefinitionDAO studyEventDefinitionDAO = new StudyEventDefinitionDAO(getDataSource());
StudyEventDAO studyEventDAO = new StudyEventDAO(getDataSource());
StudyEventDefinitionBean studyEventDefinition = (StudyEventDefinitionBean) studyEventDefinitionDAO.findByPK(edcb.getStudyEventDefinitionId());
StudyEventBean studyEvent = (StudyEventBean) studyEventDAO.findByPK(ecb.getStudyEventId());
VariableSubstitutionHelper.replaceVariables(dsb, currentStudy, (StudySubjectBean) studySubjectDAO.findByPK(studySubjectId), studyEventDefinition, studyEvent, getDataSource());
FormDiscrepancyNotes discNotes = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
if (discNotes == null) {
discNotes = new FormDiscrepancyNotes();
session.setAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME, discNotes);
}
/*
* if (hasItemGroup) { //
* dsb.setDisplayItemGroups(newDisplayBean.getDisplayItemGroups());
* request.setAttribute("new_table", true); }
*/
// If the Horizontal type table will be used, then set the
// DisplaySectionBean's
// DisplayFormGroups List to the ones we have just generated
// @pgawade 30-May-2012 Fix for issue 13963 - added an extra parameter
// 'isSubmitted' to method createItemWithGroups
List<DisplayItemWithGroupBean> displayItemWithGroups = super.createItemWithGroups(dsb, hasItemGroup, eventDefinitionCRFId, request, isSubmitted);
dsb.setDisplayItemGroups(displayItemWithGroups);
super.populateNotesWithDBNoteCounts(discNotes, dsb, request);
if (fp.getString("fromViewNotes") != null && "1".equals(fp.getString("fromViewNotes"))) {
request.setAttribute("fromViewNotes", fp.getString("fromViewNotes"));
} else {
session.removeAttribute("viewNotesURL");
}
if ("saveNotes".equalsIgnoreCase(action)) {
LOGGER.info("33333how many group rows:" + dsb.getDisplayItemGroups().size());
// let's save notes for the blank items
DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(getDataSource());
discNotes = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
for (int i = 0; i < dsb.getDisplayItemGroups().size(); i++) {
DisplayItemWithGroupBean diwb = dsb.getDisplayItemGroups().get(i);
if (diwb.isInGroup()) {
List<DisplayItemGroupBean> dgbs = diwb.getItemGroups();
LOGGER.info("dgbs size: " + dgbs.size());
for (int j = 0; j < dgbs.size(); j++) {
DisplayItemGroupBean displayGroup = dgbs.get(j);
List<DisplayItemBean> items = displayGroup.getItems();
LOGGER.info("item size: " + items.size());
for (DisplayItemBean displayItem : items) {
String inputName = getGroupItemInputName(displayGroup, j, displayItem);
LOGGER.info("inputName:" + inputName);
LOGGER.info("item data id:" + displayItem.getData().getId());
AddNewSubjectServlet.saveFieldNotes(inputName, discNotes, dndao, displayItem.getData().getId(), "itemData", currentStudy);
}
}
} else {
DisplayItemBean dib = diwb.getSingleItem();
// TODO work on this line
String inputName = getInputName(dib);
AddNewSubjectServlet.saveFieldNotes(inputName, discNotes, dndao, dib.getData().getId(), DiscrepancyNoteBean.ITEM_DATA, currentStudy);
ArrayList childItems = dib.getChildren();
for (int j = 0; j < childItems.size(); j++) {
DisplayItemBean child = (DisplayItemBean) childItems.get(j);
inputName = getInputName(child);
AddNewSubjectServlet.saveFieldNotes(inputName, discNotes, dndao, dib.getData().getId(), DiscrepancyNoteBean.ITEM_DATA, currentStudy);
}
}
}
addPageMessage("Discrepancy notes are saved successfully.", request);
request.setAttribute("id", studySubjectId + "");
forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET, request, response);
// "ViewStudySubject?id=" + studySubjectId));
return;
} else {
request.setAttribute(BEAN_DISPLAY, dsb);
request.setAttribute(BEAN_ANNOTATIONS, ecb.getAnnotations());
request.setAttribute("sec", sb);
request.setAttribute("EventCRFBean", ecb);
int tabNum = 1;
if ("".equalsIgnoreCase(fp.getString("tabId"))) {
tabNum = 1;
} else {
tabNum = fp.getInt("tabId");
}
request.setAttribute("tabId", new Integer(tabNum).toString());
// 2808: Signal interviewer.jsp that the containing page is
// viewSectionData,
// for the purpose of suppressing discrepancy note icons for the
// interview date and name fields
request.setAttribute(ENCLOSING_PAGE, "viewSectionData");
if ("yes".equalsIgnoreCase(printVersion)) {
forwardPage(Page.VIEW_SECTION_DATA_ENTRY_PRINT, request, response);
} else {
forwardPage(Page.VIEW_SECTION_DATA_ENTRY, request, response);
}
}
}
Also used :
HashMap(java.util.HashMap)
ArrayList(java.util.ArrayList)
StudyEventDefinitionBean(org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean)
StudyEventBean(org.akaza.openclinica.bean.managestudy.StudyEventBean)
EventCRFBean(org.akaza.openclinica.bean.submit.EventCRFBean)
StudyEventDAO(org.akaza.openclinica.dao.managestudy.StudyEventDAO)
DiscrepancyNoteUtil(org.akaza.openclinica.service.DiscrepancyNoteUtil)
StudyDAO(org.akaza.openclinica.dao.managestudy.StudyDAO)
DiscrepancyNoteDAO(org.akaza.openclinica.dao.managestudy.DiscrepancyNoteDAO)
FormDiscrepancyNotes(org.akaza.openclinica.control.form.FormDiscrepancyNotes)
FormProcessor(org.akaza.openclinica.control.form.FormProcessor)
DisplayItemWithGroupBean(org.akaza.openclinica.bean.submit.DisplayItemWithGroupBean)
StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean)
EventDefinitionCRFDAO(org.akaza.openclinica.dao.managestudy.EventDefinitionCRFDAO)
SectionBean(org.akaza.openclinica.bean.submit.SectionBean)
DisplaySectionBean(org.akaza.openclinica.bean.submit.DisplaySectionBean)
SubjectBean(org.akaza.openclinica.bean.submit.SubjectBean)
StudySubjectBean(org.akaza.openclinica.bean.managestudy.StudySubjectBean)
StudySubjectBean(org.akaza.openclinica.bean.managestudy.StudySubjectBean)
StudyEventDefinitionDAO(org.akaza.openclinica.dao.managestudy.StudyEventDefinitionDAO)
DiscrepancyNoteBean(org.akaza.openclinica.bean.managestudy.DiscrepancyNoteBean)
EventDefinitionCRFBean(org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean)
ItemGroupBean(org.akaza.openclinica.bean.submit.ItemGroupBean)
DisplayItemGroupBean(org.akaza.openclinica.bean.submit.DisplayItemGroupBean)
StudySubjectDAO(org.akaza.openclinica.dao.managestudy.StudySubjectDAO)
InsufficientPermissionException(org.akaza.openclinica.web.InsufficientPermissionException)
DisplayItemBean(org.akaza.openclinica.bean.submit.DisplayItemBean)
DiscrepancyNoteThread(org.akaza.openclinica.service.DiscrepancyNoteThread)
DisplayItemGroupBean(org.akaza.openclinica.bean.submit.DisplayItemGroupBean)
HttpSession(javax.servlet.http.HttpSession)
DisplayTableOfContentsBean(org.akaza.openclinica.bean.submit.DisplayTableOfContentsBean)
StudySubjectDAO(org.akaza.openclinica.dao.managestudy.StudySubjectDAO)
Date(java.util.Date)
InsufficientPermissionException(org.akaza.openclinica.web.InsufficientPermissionException)
DisplaySectionBean(org.akaza.openclinica.bean.submit.DisplaySectionBean)
DateFormat(java.text.DateFormat)
SimpleDateFormat(java.text.SimpleDateFormat)
CRFVersionBean(org.akaza.openclinica.bean.submit.CRFVersionBean)
SimpleDateFormat(java.text.SimpleDateFormat)
Example 10 with FormDiscrepancyNotes
use of org.akaza.openclinica.control.form.FormDiscrepancyNotes in project OpenClinica by OpenClinica.
the class CreateNewStudyEventServlet method processRequest.
@Override
protected void processRequest() throws Exception {
checkStudyLocked(Page.LIST_STUDY_SUBJECTS, respage.getString("current_study_locked"));
panel.setStudyInfoShown(false);
fp = new FormProcessor(request);
FormDiscrepancyNotes discNotes = null;
int studySubjectId = fp.getInt(INPUT_STUDY_SUBJECT_ID_FROM_VIEWSUBJECT);
// input from manage subject matrix, user has specified definition id
int studyEventDefinitionId = fp.getInt(INPUT_STUDY_EVENT_DEFINITION);
// TODO: make this sensitive to permissions
StudySubjectDAO sdao = new StudySubjectDAO(sm.getDataSource());
StudySubjectBean ssb;
if (studySubjectId <= 0) {
ssb = (StudySubjectBean) request.getAttribute(INPUT_STUDY_SUBJECT);
} else {
// YW 11-08-2007, << a new study event could not be added if its
// study subject has been removed
ssb = (StudySubjectBean) sdao.findByPK(studySubjectId);
Status s = ssb.getStatus();
if ("removed".equalsIgnoreCase(s.getName()) || "auto-removed".equalsIgnoreCase(s.getName())) {
addPageMessage(resword.getString("study_event") + resterm.getString("could_not_be") + resterm.getString("added") + "." + respage.getString("study_subject_has_been_deleted"));
request.setAttribute("id", new Integer(studySubjectId).toString());
forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET);
}
// YW >>
request.setAttribute(INPUT_REQUEST_STUDY_SUBJECT, "no");
}
// running this crashes the server, or so we think...instead, let's grab a count
// or remove it altogether tbh 10/2009
// ArrayList subjects = sdao.findAllActiveByStudyOrderByLabel(currentStudy);
// TODO: make this sensitive to permissions
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
StudyBean studyWithEventDefinitions = currentStudy;
if (currentStudy.getParentStudyId() > 0) {
studyWithEventDefinitions = new StudyBean();
studyWithEventDefinitions.setId(currentStudy.getParentStudyId());
}
// find all active definitions with CRFs
ArrayList eventDefinitions = seddao.findAllActiveByStudy(studyWithEventDefinitions);
// EventDefinitionCRFDAO edcdao = new
// EventDefinitionCRFDAO(sm.getDataSource());
// ArrayList definitionsWithCRF = new ArrayList();
// for (int i=0; i<eventDefinitions.size(); i++) {
// StudyEventDefinitionBean sed =
// (StudyEventDefinitionBean)eventDefinitions.get(i);
// logger.info("StudyEventDefinition name[" + sed.getName() + "]");
// ArrayList edcs = edcdao.findAllByEventDefinitionId(sed.getId());
// if (!edcs.isEmpty()) {
// definitionsWithCRF.add(sed);
// }
// }
// Collections.sort(definitionsWithCRF);
Collections.sort(eventDefinitions);
/*
* ArrayList eventDefinitionsScheduled = new ArrayList(); for (int i =
* 0; i < eventDefinitions.size(); i++) { StudyEventDefinitionBean sed =
* (StudyEventDefinitionBean) eventDefinitions.get(i); if
* (sed.getType().equalsIgnoreCase("scheduled")) {
* eventDefinitionsScheduled.add(sed); } }
*/
// all definitions will appear in scheduled event creation box-11/26/05
ArrayList eventDefinitionsScheduled = eventDefinitions;
if (!fp.isSubmitted()) {
// StudyEventDAO sed = new StudyEventDAO(sm.getDataSource());
// sed.updateSampleOrdinals_v092();
HashMap presetValues = new HashMap();
// YW 08-16-2007 << set default as blank for time
presetValues.put(INPUT_STARTDATE_PREFIX + "Hour", new Integer(-1));
presetValues.put(INPUT_STARTDATE_PREFIX + "Minute", new Integer(-1));
presetValues.put(INPUT_STARTDATE_PREFIX + "Half", new String(""));
presetValues.put(INPUT_ENDDATE_PREFIX + "Hour", new Integer(-1));
presetValues.put(INPUT_ENDDATE_PREFIX + "Minute", new Integer(-1));
presetValues.put(INPUT_ENDDATE_PREFIX + "Half", new String(""));
for (int i = 0; i < ADDITIONAL_SCHEDULED_NUM; ++i) {
presetValues.put(INPUT_STARTDATE_PREFIX_SCHEDULED[i] + "Hour", new Integer(-1));
presetValues.put(INPUT_STARTDATE_PREFIX_SCHEDULED[i] + "Minute", new Integer(-1));
presetValues.put(INPUT_STARTDATE_PREFIX_SCHEDULED[i] + "Half", new String(""));
presetValues.put(INPUT_ENDDATE_PREFIX_SCHEDULED[i] + "Hour", new Integer(-1));
presetValues.put(INPUT_ENDDATE_PREFIX_SCHEDULED[i] + "Minute", new Integer(-1));
presetValues.put(INPUT_ENDDATE_PREFIX_SCHEDULED[i] + "Half", new String(""));
}
// SimpleDateFormat sdf = new SimpleDateFormat("MM/dd/yyyy");
// example of taking the above line and transferring to i18n on the
// below line, tbh
String dateValue = local_df.format(new Date(System.currentTimeMillis()));
presetValues.put(INPUT_STARTDATE_PREFIX + "Date", dateValue);
for (int i = 0; i < ADDITIONAL_SCHEDULED_NUM; ++i) {
presetValues.put(INPUT_STARTDATE_PREFIX_SCHEDULED[i] + "Date", dateValue);
// location
presetValues.put(INPUT_SCHEDULED_LOCATION[i], currentStudy.getFacilityCity());
presetValues.put(this.DISPLAY_SCHEDULED[i], "none");
}
// defualt
presetValues.put(INPUT_LOCATION, currentStudy.getFacilityCity());
if (ssb != null && ssb.isActive()) {
presetValues.put(INPUT_STUDY_SUBJECT, ssb);
String requestStudySubject = (String) request.getAttribute(INPUT_REQUEST_STUDY_SUBJECT);
if (requestStudySubject != null) {
presetValues.put(INPUT_REQUEST_STUDY_SUBJECT, requestStudySubject);
dateValue = local_df.format(new Date());
presetValues.put(INPUT_STARTDATE_PREFIX + "Date", dateValue);
}
}
if (studyEventDefinitionId > 0) {
StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(studyEventDefinitionId);
presetValues.put(INPUT_STUDY_EVENT_DEFINITION, sed);
}
// tbh
logger.debug("set preset values: " + presetValues.toString());
logger.debug("found def.w.CRF list, size " + eventDefinitions.size());
// tbh
setPresetValues(presetValues);
ArrayList subjects = new ArrayList();
setupBeans(subjects, eventDefinitions);
discNotes = new FormDiscrepancyNotes();
session.setAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME, discNotes);
request.setAttribute("eventDefinitionsScheduled", eventDefinitionsScheduled);
setInputMessages(new HashMap());
forwardPage(Page.CREATE_NEW_STUDY_EVENT);
} else {
// tbh
// String dateCheck = (String)request.getAttribute("startDate");
// String endCheck = (String)request.getAttribute("endDate");
// logger.debug(dateCheck+"; "+endCheck);
String dateCheck2 = request.getParameter("startDate");
String endCheck2 = request.getParameter("endDate");
logger.debug(dateCheck2 + "; " + endCheck2);
// YW, 3-12-2008, 2220 fix <<
String strEnd = fp.getDateTimeInputString(INPUT_ENDDATE_PREFIX);
String[] strEndScheduled = new String[ADDITIONAL_SCHEDULED_NUM];
for (int i = 0; i < ADDITIONAL_SCHEDULED_NUM; ++i) {
strEndScheduled[i] = fp.getDateTimeInputString(INPUT_ENDDATE_PREFIX_SCHEDULED[i]);
}
Date start = getInputStartDate();
Date end = null;
Date[] startScheduled = new Date[ADDITIONAL_SCHEDULED_NUM];
for (int i = 0; i < ADDITIONAL_SCHEDULED_NUM; ++i) {
startScheduled[i] = getInputStartDateScheduled(i);
}
Date[] endScheduled = new Date[ADDITIONAL_SCHEDULED_NUM];
// YW >>
// for (java.util.Enumeration enu = request.getAttributeNames();
// enu.hasMoreElements() ;) {
// logger.debug(">>> found "+enu.nextElement().toString());
// }
// tbh
discNotes = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
if (discNotes == null) {
discNotes = new FormDiscrepancyNotes();
session.setAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME, discNotes);
}
DiscrepancyValidator v = new DiscrepancyValidator(request, discNotes);
v.addValidation(INPUT_STARTDATE_PREFIX, Validator.IS_DATE_TIME);
v.alwaysExecuteLastValidation(INPUT_STARTDATE_PREFIX);
if (!strEnd.equals("")) {
v.addValidation(INPUT_ENDDATE_PREFIX, Validator.IS_DATE_TIME);
v.alwaysExecuteLastValidation(INPUT_ENDDATE_PREFIX);
}
v.addValidation(INPUT_STUDY_EVENT_DEFINITION, Validator.ENTITY_EXISTS_IN_STUDY, seddao, studyWithEventDefinitions);
// v.addValidation(INPUT_STUDY_SUBJECT, Validator.ENTITY_EXISTS_IN_STUDY, sdao, currentStudy);
// removed tbh 11/2009
//Made optional field-issue-4904.
//v.addValidation(INPUT_LOCATION, Validator.NO_BLANKS);
v.addValidation(INPUT_STUDY_SUBJECT_LABEL, Validator.NO_BLANKS);
v.addValidation(INPUT_LOCATION, Validator.LENGTH_NUMERIC_COMPARISON, NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO, 2000);
if (currentStudy.getStudyParameterConfig().getEventLocationRequired().equalsIgnoreCase("required")) {
v.addValidation(INPUT_LOCATION, Validator.NO_BLANKS);
}
v.alwaysExecuteLastValidation(INPUT_LOCATION);
boolean hasScheduledEvent = false;
for (int i = 0; i < ADDITIONAL_SCHEDULED_NUM; ++i) {
if (!StringUtil.isBlank(fp.getString(this.INPUT_STUDY_EVENT_DEFINITION_SCHEDULED[i]))) {
// logger.debug("has scheduled definition******");
v.addValidation(this.INPUT_STUDY_EVENT_DEFINITION_SCHEDULED[i], Validator.ENTITY_EXISTS_IN_STUDY, seddao, studyWithEventDefinitions);
if (currentStudy.getStudyParameterConfig().getEventLocationRequired().equalsIgnoreCase("required")) {
v.addValidation(INPUT_SCHEDULED_LOCATION[i], Validator.NO_BLANKS);
v.addValidation(INPUT_SCHEDULED_LOCATION[i], Validator.LENGTH_NUMERIC_COMPARISON, NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO, 2000);
v.alwaysExecuteLastValidation(INPUT_SCHEDULED_LOCATION[i]);
}
v.addValidation(INPUT_STARTDATE_PREFIX_SCHEDULED[i], Validator.IS_DATE_TIME);
v.alwaysExecuteLastValidation(INPUT_STARTDATE_PREFIX_SCHEDULED[i]);
if (!strEndScheduled[i].equals("")) {
v.addValidation(INPUT_ENDDATE_PREFIX_SCHEDULED[i], Validator.IS_DATE_TIME);
v.alwaysExecuteLastValidation(INPUT_ENDDATE_PREFIX_SCHEDULED[i]);
}
hasScheduledEvent = true;
fp.addPresetValue(DISPLAY_SCHEDULED[i], "all");
} else {
fp.addPresetValue(DISPLAY_SCHEDULED[i], "none");
}
}
HashMap errors = v.validate();
// logger.debug("v is not null *****");
String location = resword.getString("location");
// is a required field
if (!StringUtil.isBlank(fp.getString(INPUT_LOCATION)) && fp.getString(INPUT_LOCATION).equalsIgnoreCase(location)) {
Validator.addError(errors, INPUT_LOCATION, restext.getString("not_a_valid_location"));
}
StudyEventDefinitionBean definition = (StudyEventDefinitionBean) seddao.findByPK(fp.getInt(INPUT_STUDY_EVENT_DEFINITION));
// StudySubjectBean studySubject = (StudySubjectBean) sdao.findByPK(fp.getInt(INPUT_STUDY_SUBJECT));
// sdao.findByLabelAndStudy(label, study)
StudySubjectBean studySubject = sdao.findByLabelAndStudy(fp.getString(INPUT_STUDY_SUBJECT_LABEL), currentStudy);
// what if we are sent here from AddNewSubjectServlet.java??? we need to get that study subject bean
if (request.getAttribute(INPUT_STUDY_SUBJECT) != null) {
studySubject = (StudySubjectBean) request.getAttribute(INPUT_STUDY_SUBJECT);
}
// << tbh
if (studySubject.getLabel() == "") {
// add an error here, tbh
Validator.addError(errors, INPUT_STUDY_SUBJECT, respage.getString("must_enter_subject_ID_for_identifying"));
}
if (!subjectMayReceiveStudyEvent(sm.getDataSource(), definition, studySubject)) {
Validator.addError(errors, INPUT_STUDY_EVENT_DEFINITION, restext.getString("not_added_since_event_not_repeating"));
}
ArrayList<StudyEventDefinitionBean> definitionScheduleds = new ArrayList<StudyEventDefinitionBean>();
int[] scheduledDefinitionIds = new int[ADDITIONAL_SCHEDULED_NUM];
if (hasScheduledEvent) {
for (int i = 0; i < ADDITIONAL_SCHEDULED_NUM; ++i) {
int pk = fp.getInt(INPUT_STUDY_EVENT_DEFINITION_SCHEDULED[i]);
if (pk > 0) {
StudyEventDefinitionBean sedb = (StudyEventDefinitionBean) seddao.findByPK(pk);
logger.debug("scheduled def:" + pk + " " + INPUT_STUDY_EVENT_DEFINITION_SCHEDULED[i] + " " + sedb.getName());
definitionScheduleds.add(sedb);
scheduledDefinitionIds[i] = pk;
if (!subjectMayReceiveStudyEvent(sm.getDataSource(), sedb, studySubject)) {
Validator.addError(errors, INPUT_STUDY_EVENT_DEFINITION_SCHEDULED[i], restext.getString("not_added_since_event_not_repeating"));
}
} else {
definitionScheduleds.add(new StudyEventDefinitionBean());
}
}
}
// YW, 3-12-2008, 2220 fix >>
if (!"".equals(strEnd) && !errors.containsKey(INPUT_STARTDATE_PREFIX) && !errors.containsKey(INPUT_ENDDATE_PREFIX)) {
end = getInputEndDate();
if (!fp.getString(INPUT_STARTDATE_PREFIX + "Date").equals(fp.getString(INPUT_ENDDATE_PREFIX + "Date"))) {
if (end.before(start)) {
Validator.addError(errors, INPUT_ENDDATE_PREFIX, resexception.getString("input_provided_not_occure_after_previous_start_date_time"));
}
} else {
// if in same date, only check when both had time entered
if (fp.timeEntered(INPUT_STARTDATE_PREFIX) && fp.timeEntered(INPUT_ENDDATE_PREFIX)) {
if (end.before(start) || end.equals(start)) {
Validator.addError(errors, INPUT_ENDDATE_PREFIX, resexception.getString("input_provided_not_occure_after_previous_start_date_time"));
}
}
}
}
String prevStartPrefix = INPUT_STARTDATE_PREFIX;
Set<Integer> pickedSeds = new TreeSet<Integer>();
pickedSeds.add(studyEventDefinitionId);
HashMap<Integer, Integer> scheduledSeds = new HashMap<Integer, Integer>();
scheduledSeds.put(studyEventDefinitionId, -1);
for (int i = 0; i < ADDITIONAL_SCHEDULED_NUM; ++i) {
if (scheduledDefinitionIds[i] > 0 && !errors.containsKey(INPUT_STARTDATE_PREFIX_SCHEDULED[i]) && !errors.containsKey(INPUT_ENDDATE_PREFIX_SCHEDULED[i])) {
if (scheduledSeds.containsKey(scheduledDefinitionIds[i])) {
int prevStart = scheduledSeds.get(scheduledDefinitionIds[i]);
prevStartPrefix = prevStart == -1 ? INPUT_STARTDATE_PREFIX : INPUT_STARTDATE_PREFIX_SCHEDULED[prevStart];
Date prevStartDate = prevStart == -1 ? this.getInputStartDate() : this.getInputStartDateScheduled(Integer.parseInt(prevStartPrefix.charAt(prevStartPrefix.length() - 1) + ""));
if (fp.getString(INPUT_STARTDATE_PREFIX_SCHEDULED[i] + "Date").equals(fp.getString(prevStartPrefix + "Date"))) {
// if in same day, only check when both have time
// inputs.
boolean schStartTime = fp.timeEntered(INPUT_STARTDATE_PREFIX_SCHEDULED[i]);
boolean startTime = fp.timeEntered(prevStartPrefix);
if (schStartTime && startTime) {
if (startScheduled[i].before(prevStartDate)) {
Validator.addError(errors, INPUT_STARTDATE_PREFIX_SCHEDULED[i], resexception.getString("input_provided_not_occure_after_previous_start_date_time"));
}
}
} else {
if (startScheduled[i].before(prevStartDate)) {
Validator.addError(errors, INPUT_STARTDATE_PREFIX_SCHEDULED[i], resexception.getString("input_provided_not_occure_after_previous_start_date_time"));
}
}
}
scheduledSeds.put(scheduledDefinitionIds[i], i);
if (!strEndScheduled[i].equals("")) {
endScheduled[i] = fp.getDateTime(INPUT_ENDDATE_PREFIX_SCHEDULED[i]);
String prevEndPrefix = i > 0 ? INPUT_ENDDATE_PREFIX_SCHEDULED[i - 1] : INPUT_ENDDATE_PREFIX;
if (!fp.getString(INPUT_STARTDATE_PREFIX_SCHEDULED[i] + "Date").equals(fp.getString(prevEndPrefix + "Date"))) {
if (endScheduled[i].before(startScheduled[i])) {
Validator.addError(errors, INPUT_ENDDATE_PREFIX_SCHEDULED[i], resexception.getString("input_provided_not_occure_after_previous_start_date_time"));
}
} else {
// entered
if (fp.timeEntered(INPUT_STARTDATE_PREFIX_SCHEDULED[i]) && fp.timeEntered(INPUT_ENDDATE_PREFIX_SCHEDULED[i])) {
if (endScheduled[i].before(startScheduled[i]) || endScheduled[i].equals(startScheduled[i])) {
Validator.addError(errors, INPUT_ENDDATE_PREFIX_SCHEDULED[i], resexception.getString("input_provided_not_occure_after_previous_start_date_time"));
}
}
}
}
}
}
// YW >>
logger.error("we have errors; number of this; " + errors.size());
if (!errors.isEmpty()) {
logger.debug("we have errors; number of this; " + errors.size());
logger.error("found request study subject: " + fp.getString(INPUT_REQUEST_STUDY_SUBJECT));
addPageMessage(respage.getString("errors_in_submission_see_below"));
setInputMessages(errors);
fp.addPresetValue(INPUT_STUDY_EVENT_DEFINITION, definition);
fp.addPresetValue(INPUT_STUDY_SUBJECT, studySubject);
fp.addPresetValue(INPUT_STUDY_SUBJECT_LABEL, fp.getString(INPUT_STUDY_SUBJECT_LABEL));
fp.addPresetValue(INPUT_REQUEST_STUDY_SUBJECT, fp.getString(INPUT_REQUEST_STUDY_SUBJECT));
fp.addPresetValue(INPUT_LOCATION, fp.getString(INPUT_LOCATION));
for (int i = 0; i < ADDITIONAL_SCHEDULED_NUM; ++i) {
fp.addPresetValue(INPUT_SCHEDULED_LOCATION[i], fp.getString(INPUT_SCHEDULED_LOCATION[i]));
}
String[] prefixes = new String[2 + 2 * ADDITIONAL_SCHEDULED_NUM];
prefixes[0] = INPUT_STARTDATE_PREFIX;
prefixes[1] = INPUT_ENDDATE_PREFIX;
int b = ADDITIONAL_SCHEDULED_NUM + 2;
for (int i = 2; i < b; ++i) {
prefixes[i] = INPUT_STARTDATE_PREFIX_SCHEDULED[i - 2];
}
for (int i = b; i < ADDITIONAL_SCHEDULED_NUM + b; ++i) {
prefixes[i] = INPUT_ENDDATE_PREFIX_SCHEDULED[i - b];
}
fp.setCurrentDateTimeValuesAsPreset(prefixes);
if (hasScheduledEvent) {
for (int i = 0; i < ADDITIONAL_SCHEDULED_NUM; ++i) {
fp.addPresetValue(INPUT_STUDY_EVENT_DEFINITION_SCHEDULED[i], definitionScheduleds.get(i));
}
}
setPresetValues(fp.getPresetValues());
ArrayList subjects = new ArrayList();
setupBeans(subjects, eventDefinitions);
request.setAttribute("eventDefinitionsScheduled", eventDefinitionsScheduled);
forwardPage(Page.CREATE_NEW_STUDY_EVENT);
} else {
logger.debug("error is empty");
StudyEventDAO sed = new StudyEventDAO(sm.getDataSource());
StudyEventBean studyEvent = new StudyEventBean();
studyEvent.setStudyEventDefinitionId(definition.getId());
studyEvent.setStudySubjectId(studySubject.getId());
// YW 08-17-2007 <<
if ("-1".equals(getInputStartHour()) && "-1".equals(getInputStartMinute()) && "".equals(getInputStartHalf())) {
studyEvent.setStartTimeFlag(false);
} else {
studyEvent.setStartTimeFlag(true);
}
// YW >>
studyEvent.setDateStarted(start);
// comment to find bug 1389, tbh
logger.debug("found start date: " + local_df.format(start));
Date[] startScheduled2 = new Date[ADDITIONAL_SCHEDULED_NUM];
for (int i = 0; i < ADDITIONAL_SCHEDULED_NUM; ++i) {
startScheduled2[i] = getInputStartDateScheduled(i);
}
// YW, 3-12-2008, 2220 fix <<
if (!"".equals(strEnd)) {
// YW >>
if ("-1".equals(getInputEndHour()) && "-1".equals(getInputEndMinute()) && "".equals(getInputEndHalf())) {
studyEvent.setEndTimeFlag(false);
} else {
studyEvent.setEndTimeFlag(true);
}
studyEvent.setDateEnded(end);
}
studyEvent.setOwner(ub);
studyEvent.setStatus(Status.AVAILABLE);
studyEvent.setLocation(fp.getString(INPUT_LOCATION));
studyEvent.setSubjectEventStatus(SubjectEventStatus.SCHEDULED);
// ArrayList subjectsExistingEvents =
// sed.findAllByStudyAndStudySubjectId(currentStudy,
// studySubject.getId());
studyEvent.setSampleOrdinal(sed.getMaxSampleOrdinal(definition, studySubject) + 1);
studyEvent = (StudyEventBean) sed.create(studyEvent);
if (!studyEvent.isActive()) {
throw new OpenClinicaException(restext.getString("event_not_created_in_database"), "2");
}
addPageMessage(restext.getString("X_event_wiht_definition") + definition.getName() + restext.getString("X_and_subject") + studySubject.getName() + respage.getString("X_was_created_succesfully"));
// save discrepancy notes into DB
FormDiscrepancyNotes fdn = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(sm.getDataSource());
String[] eventFields = { INPUT_LOCATION, INPUT_STARTDATE_PREFIX, INPUT_ENDDATE_PREFIX };
for (String element : eventFields) {
AddNewSubjectServlet.saveFieldNotes(element, fdn, dndao, studyEvent.getId(), "studyEvent", currentStudy);
}
// logger.debug("here ok 3333333333333333");
if (hasScheduledEvent) {
for (int i = 0; i < ADDITIONAL_SCHEDULED_NUM; ++i) {
// which is scheduledDefinitionIds[i] > 0
if (scheduledDefinitionIds[i] > 0) {
if (subjectMayReceiveStudyEvent(sm.getDataSource(), definitionScheduleds.get(i), studySubject)) {
StudyEventBean studyEventScheduled = new StudyEventBean();
studyEventScheduled.setStudyEventDefinitionId(scheduledDefinitionIds[i]);
studyEventScheduled.setStudySubjectId(studySubject.getId());
// YW 11-14-2007
if ("-1".equals(fp.getString(INPUT_STARTDATE_PREFIX_SCHEDULED[i] + "Hour")) && "-1".equals(fp.getString(INPUT_STARTDATE_PREFIX_SCHEDULED[i] + "Minute")) && "".equals(fp.getString(INPUT_STARTDATE_PREFIX_SCHEDULED[i] + "Half"))) {
studyEventScheduled.setStartTimeFlag(false);
} else {
studyEventScheduled.setStartTimeFlag(true);
}
// YW >>
studyEventScheduled.setDateStarted(startScheduled[i]);
// YW, 3-12-2008, 2220 fix<<
if (!"".equals(strEndScheduled[i])) {
endScheduled[i] = fp.getDateTime(INPUT_ENDDATE_PREFIX_SCHEDULED[i]);
if ("-1".equals(fp.getString(INPUT_ENDDATE_PREFIX_SCHEDULED[i] + "Hour")) && "-1".equals(fp.getString(INPUT_ENDDATE_PREFIX_SCHEDULED[i] + "Minute")) && "".equals(fp.getString(INPUT_ENDDATE_PREFIX_SCHEDULED[i] + "Half"))) {
studyEventScheduled.setEndTimeFlag(false);
} else {
studyEventScheduled.setEndTimeFlag(true);
}
}
studyEventScheduled.setDateEnded(endScheduled[i]);
// YW >>
studyEventScheduled.setOwner(ub);
studyEventScheduled.setStatus(Status.AVAILABLE);
studyEventScheduled.setLocation(fp.getString(INPUT_SCHEDULED_LOCATION[i]));
studyEvent.setSubjectEventStatus(SubjectEventStatus.SCHEDULED);
// subjectsExistingEvents =
// sed.findAllByStudyAndStudySubjectId(
// currentStudy,
// studySubject.getId());
studyEventScheduled.setSampleOrdinal(sed.getMaxSampleOrdinal(definitionScheduleds.get(i), studySubject) + 1);
//System.out.println("create scheduled events");
studyEventScheduled = (StudyEventBean) sed.create(studyEventScheduled);
if (!studyEventScheduled.isActive()) {
throw new OpenClinicaException(restext.getString("scheduled_event_not_created_in_database"), "2");
}
AddNewSubjectServlet.saveFieldNotes(INPUT_SCHEDULED_LOCATION[i], fdn, dndao, studyEventScheduled.getId(), "studyEvent", currentStudy);
// YW 3-12-2008, 2220 fix <<
AddNewSubjectServlet.saveFieldNotes(INPUT_STARTDATE_PREFIX_SCHEDULED[i], fdn, dndao, studyEventScheduled.getId(), "studyEvent", currentStudy);
AddNewSubjectServlet.saveFieldNotes(INPUT_ENDDATE_PREFIX_SCHEDULED[i], fdn, dndao, studyEventScheduled.getId(), "studyEvent", currentStudy);
// YW >>
} else {
addPageMessage(restext.getString("scheduled_event_definition") + definitionScheduleds.get(i).getName() + restext.getString("X_and_subject") + studySubject.getName() + restext.getString("not_created_since_event_not_repeating") + restext.getString("event_type_already_exists"));
}
}
}
}
// if
session.removeAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
request.setAttribute(EnterDataForStudyEventServlet.INPUT_EVENT_ID, String.valueOf(studyEvent.getId()));
ArrayList<String> pMessage = (ArrayList<String>) request.getAttribute(SecureController.PAGE_MESSAGE);
String url = response.encodeRedirectURL("EnterDataForStudyEvent?eventId=" + studyEvent.getId() + "&alertmessage=" + URLEncoder.encode(pMessage.get(0), "UTF-8"));
response.sendRedirect(url);
// + studyEvent.getId()));
return;
}
}
}
Also used :
HashMap(java.util.HashMap)
ArrayList(java.util.ArrayList)
StudyEventDefinitionBean(org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean)
StudyEventBean(org.akaza.openclinica.bean.managestudy.StudyEventBean)
OpenClinicaException(org.akaza.openclinica.exception.OpenClinicaException)
TreeSet(java.util.TreeSet)
StudyEventDAO(org.akaza.openclinica.dao.managestudy.StudyEventDAO)
Status(org.akaza.openclinica.bean.core.Status)
SubjectEventStatus(org.akaza.openclinica.bean.core.SubjectEventStatus)
DiscrepancyNoteDAO(org.akaza.openclinica.dao.managestudy.DiscrepancyNoteDAO)
FormDiscrepancyNotes(org.akaza.openclinica.control.form.FormDiscrepancyNotes)
FormProcessor(org.akaza.openclinica.control.form.FormProcessor)
StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean)
StudySubjectDAO(org.akaza.openclinica.dao.managestudy.StudySubjectDAO)
Date(java.util.Date)
DiscrepancyValidator(org.akaza.openclinica.control.form.DiscrepancyValidator)
StudySubjectBean(org.akaza.openclinica.bean.managestudy.StudySubjectBean)
StudyEventDefinitionDAO(org.akaza.openclinica.dao.managestudy.StudyEventDefinitionDAO)
Aggregations
FormDiscrepancyNotes (org.akaza.openclinica.control.form.FormDiscrepancyNotes)20
ArrayList (java.util.ArrayList)15
FormProcessor (org.akaza.openclinica.control.form.FormProcessor)15
HashMap (java.util.HashMap)14
StudySubjectBean (org.akaza.openclinica.bean.managestudy.StudySubjectBean)13
DiscrepancyNoteDAO (org.akaza.openclinica.dao.managestudy.DiscrepancyNoteDAO)13
StudySubjectDAO (org.akaza.openclinica.dao.managestudy.StudySubjectDAO)13
StudyBean (org.akaza.openclinica.bean.managestudy.StudyBean)12
StudyDAO (org.akaza.openclinica.dao.managestudy.StudyDAO)11
Date (java.util.Date)10
StudyEventBean (org.akaza.openclinica.bean.managestudy.StudyEventBean)9
StudyEventDAO (org.akaza.openclinica.dao.managestudy.StudyEventDAO)9
DiscrepancyNoteBean (org.akaza.openclinica.bean.managestudy.DiscrepancyNoteBean)8
StudyEventDefinitionBean (org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean)8
EventCRFBean (org.akaza.openclinica.bean.submit.EventCRFBean)8
SubjectBean (org.akaza.openclinica.bean.submit.SubjectBean)8
StudyEventDefinitionDAO (org.akaza.openclinica.dao.managestudy.StudyEventDefinitionDAO)8
SubjectDAO (org.akaza.openclinica.dao.submit.SubjectDAO)8
EventCRFDAO (org.akaza.openclinica.dao.submit.EventCRFDAO)7
ItemDataBean (org.akaza.openclinica.bean.submit.ItemDataBean)6
