Examples with FormProcessor org.akaza.openclinica.control.form.FormProcessor used on opensource projects

Example 86 with FormProcessor

use of org.akaza.openclinica.control.form.FormProcessor in project OpenClinica by OpenClinica.

the class ViewStudySubjectServlet method mayAccess.

/**
     * Current User may access a requested study subject in the current user's
     * studies
     *
     * @author ywang 10-18-2007
     */
public void mayAccess() throws InsufficientPermissionException {
    FormProcessor fp = new FormProcessor(request);
    StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
    int studySubId = fp.getInt("id", true);
    if (studySubId > 0) {
        if (!entityIncluded(studySubId, ub.getName(), subdao, sm.getDataSource())) {
            addPageMessage(respage.getString("required_study_subject_not_belong"));
            throw new InsufficientPermissionException(Page.MENU, resexception.getString("entity_not_belong_studies"), "1");
        }
    }
}

Example 87 with FormProcessor

use of org.akaza.openclinica.control.form.FormProcessor in project OpenClinica by OpenClinica.

the class ViewSubjectGroupClassServlet method processRequest.

@Override
public void processRequest() throws Exception {
    String action = request.getParameter("action");
    FormProcessor fp = new FormProcessor(request);
    int classId = fp.getInt("id");
    if (classId == 0) {
        addPageMessage(respage.getString("please_choose_a_subject_group_class_to_view"));
        forwardPage(Page.SUBJECT_GROUP_CLASS_LIST_SERVLET);
    } else {
        StudyGroupClassDAO sgcdao = new StudyGroupClassDAO(sm.getDataSource());
        StudyGroupDAO sgdao = new StudyGroupDAO(sm.getDataSource());
        SubjectGroupMapDAO sgmdao = new SubjectGroupMapDAO(sm.getDataSource());
        StudyDAO studyDao = new StudyDAO(sm.getDataSource());
        StudyGroupClassBean sgcb = (StudyGroupClassBean) sgcdao.findByPK(classId);
        StudyBean study = (StudyBean) studyDao.findByPK(sgcb.getStudyId());
        checkRoleByUserAndStudy(ub, sgcb.getStudyId(), study.getParentStudyId());
        // YW 09-19-2007 <<
        sgcb.setGroupClassTypeName(GroupClassType.get(sgcb.getGroupClassTypeId()).getName());
        // YW >>
        ArrayList groups = sgdao.findAllByGroupClass(sgcb);
        ArrayList studyGroups = new ArrayList();
        for (int i = 0; i < groups.size(); i++) {
            StudyGroupBean sg = (StudyGroupBean) groups.get(i);
            ArrayList subjectMaps = sgmdao.findAllByStudyGroupClassAndGroup(sgcb.getId(), sg.getId());
            sg.setSubjectMaps(subjectMaps);
            // YW<<
            studyGroups.add(sg);
        // YW>>
        }
        request.setAttribute("group", sgcb);
        // request.setAttribute("studyGroups", groups);
        request.setAttribute("studyGroups", studyGroups);
        forwardPage(Page.VIEW_SUBJECT_GROUP_CLASS);
    }
}

Example 88 with FormProcessor

use of org.akaza.openclinica.control.form.FormProcessor in project OpenClinica by OpenClinica.

the class ViewEventCRFServlet method processRequest.

@Override
public void processRequest() throws Exception {
    FormProcessor fp = new FormProcessor(request);
    int eventCRFId = fp.getInt("id", true);
    int studySubId = fp.getInt("studySubId", true);
    StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
    ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
    ItemDAO idao = new ItemDAO(sm.getDataSource());
    ItemFormMetadataDAO ifmdao = new ItemFormMetadataDAO(sm.getDataSource());
    CRFDAO cdao = new CRFDAO(sm.getDataSource());
    SectionDAO secdao = new SectionDAO(sm.getDataSource());
    if (eventCRFId == 0) {
        addPageMessage(respage.getString("please_choose_an_event_CRF_to_view"));
        forwardPage(Page.LIST_STUDY_SUBJECTS);
    } else {
        StudySubjectBean studySub = (StudySubjectBean) subdao.findByPK(studySubId);
        request.setAttribute("studySub", studySub);
        EventCRFBean eventCRF = (EventCRFBean) ecdao.findByPK(eventCRFId);
        CRFBean crf = cdao.findByVersionId(eventCRF.getCRFVersionId());
        request.setAttribute("crf", crf);
        ArrayList sections = secdao.findAllByCRFVersionId(eventCRF.getCRFVersionId());
        for (int j = 0; j < sections.size(); j++) {
            SectionBean section = (SectionBean) sections.get(j);
            ArrayList itemData = iddao.findAllByEventCRFId(eventCRFId);
            ArrayList displayItemData = new ArrayList();
            for (int i = 0; i < itemData.size(); i++) {
                ItemDataBean id = (ItemDataBean) itemData.get(i);
                DisplayItemBean dib = new DisplayItemBean();
                ItemBean item = (ItemBean) idao.findByPK(id.getItemId());
                ItemFormMetadataBean ifm = ifmdao.findByItemIdAndCRFVersionId(item.getId(), eventCRF.getCRFVersionId());
                item.setItemMeta(ifm);
                dib.setItem(item);
                dib.setData(id);
                dib.setMetadata(ifm);
                displayItemData.add(dib);
            }
            section.setItems(displayItemData);
        }
        request.setAttribute("sections", sections);
        request.setAttribute("studySubId", new Integer(studySubId).toString());
        forwardPage(Page.VIEW_EVENT_CRF);
    }
}

Example 89 with FormProcessor

use of org.akaza.openclinica.control.form.FormProcessor in project OpenClinica by OpenClinica.

the class ViewItemAuditLogServlet method processRequest.

public void processRequest() throws Exception {
    AuditDAO adao = new AuditDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    String auditTable = fp.getString("auditTable");
    if (auditTable.equalsIgnoreCase("studysub")) {
        auditTable = "study_subject";
    } else if (auditTable.equalsIgnoreCase("eventcrf")) {
        auditTable = "event_crf";
    } else if (auditTable.equalsIgnoreCase("studyevent")) {
        auditTable = "study_event";
    } else if (auditTable.equalsIgnoreCase("itemdata")) {
        auditTable = "item_data";
    }
    int entityId = fp.getInt("entityId");
    ArrayList itemAuditEvents = adao.findItemAuditEvents(entityId, auditTable);
    request.setAttribute("itemAudits", itemAuditEvents);
    forwardPage(Page.AUDIT_LOGS_ITEMS);
}

Example 90 with FormProcessor

use of org.akaza.openclinica.control.form.FormProcessor in project OpenClinica by OpenClinica.

the class DataEntryServlet method loadFormValueForItemGroup.

/**
     * This methods will create an array of DisplayItemGroupBean, which contains multiple rows for an item group on the data entry form.
     *
     * @param digb
     *            The Item group which has multiple data rows
     * @param dbGroups
     *            The original array got from DB which contains multiple data rows
     * @param formGroups
     *            The new array got from front end which contains multiple data rows
     * @param request TODO
     * @return new constructed formGroups, compare to dbGroups, some rows are update, some new ones are added and some are removed
     */
protected List<DisplayItemGroupBean> loadFormValueForItemGroup(DisplayItemGroupBean digb, List<DisplayItemGroupBean> dbGroups, List<DisplayItemGroupBean> formGroups, int eventDefCRFId, HttpServletRequest request) {
    SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
    int repeatMax = digb.getGroupMetaBean().getRepeatMax();
    FormProcessor fp = new FormProcessor(request);
    ItemDAO idao = new ItemDAO(getDataSource());
    List<ItemBean> itBeans = idao.findAllItemsByGroupId(digb.getItemGroupBean().getId(), sb.getCRFVersionId());
    LOGGER.debug("+++ starting to review groups: " + repeatMax);
    long timeCheck = System.currentTimeMillis();
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    // adding this code from below, since we want to pass a null values list
    // in all cases of getDisplayBeansFromItems().
    // For adding null values to display items
    FormBeanUtil formBeanUtil = new FormBeanUtil();
    List<String> nullValuesList = new ArrayList<String>();
    // BWP>> Get a List<String> of any null values such as NA or NI
    // method returns null values as a List<String>
    nullValuesList = formBeanUtil.getNullValuesByEventCRFDefId(eventDefCRFId, getDataSource());
    // >>BWP
    // logger.trace("+++ starting to review groups 2: " + repeatMax);
    long two = System.currentTimeMillis() - timeCheck;
    // logger.trace("time 2: " + two + "ms");
    // >>TBH below dual for loops need a breaker to avoid a performance hit
    int firstLoopBreak = 0;
    int secondLoopBreak = 0;
    ItemDataDAO iddao = new ItemDataDAO(getDataSource(), locale);
    int maxOrdinal = iddao.getMaxOrdinalForGroup(ecb, sb, digb.getItemGroupBean());
    repeatMax = (repeatMax < maxOrdinal) ? maxOrdinal : repeatMax;
    for (int i = 0; i < repeatMax; i++) {
        DisplayItemGroupBean formGroup = new DisplayItemGroupBean();
        formGroup.setItemGroupBean(digb.getItemGroupBean());
        formGroup.setGroupMetaBean(runDynamicsCheck(digb.getGroupMetaBean(), request));
        ItemGroupBean igb = digb.getItemGroupBean();
        // want to do deep copy here, so always get a fresh copy for items,
        // may use other better way to do, like clone
        List<DisplayItemBean> dibs = FormBeanUtil.getDisplayBeansFromItems(itBeans, getDataSource(), ecb, sb.getId(), nullValuesList, getServletContext());
        // and then get newly created rows later, tbh 01/2010
        if (fp.getStartsWith(igb.getOid() + "_manual" + i + "input")) {
            formGroup.setOrdinal(i);
            formGroup.setFormInputOrdinal(i);
            formGroup.setAuto(false);
            formGroup.setInputId(igb.getOid() + "_manual" + i);
            LOGGER.debug("1: set auto to false for " + igb.getOid() + " " + i);
            dibs = processInputForGroupItem(fp, dibs, i, digb, false);
            formGroup.setItems(dibs);
            formGroups.add(formGroup);
        } else if (!StringUtil.isBlank(fp.getString(igb.getOid() + "_manual" + i + ".newRow"))) {
            // ||
            // (fp.getStartsWith(igb.getOid() + "_manual" + i + "input"))) {
            // the ordinal is the number got from [ ] and submitted by
            // repetition javascript
            formGroup.setOrdinal(i);
            formGroup.setFormInputOrdinal(i);
            formGroup.setInputId(igb.getOid() + "_manual" + i + ".newRow");
            formGroup.setAuto(false);
            LOGGER.debug("2: set auto to false for " + igb.getOid() + " " + i);
            dibs = processInputForGroupItem(fp, dibs, i, digb, false);
            formGroup.setItems(dibs);
            formGroups.add(formGroup);
        } else {
            firstLoopBreak++;
        }
        if (firstLoopBreak > 14) {
            LOGGER.debug("break first loop");
            break;
        }
    }
    // end of for (int i = 0; i < repeatMax; i++)
    // >>TBH remove the above eventually, repeat some work here?
    LOGGER.trace("+++ starting to review groups 3: " + repeatMax);
    two = System.currentTimeMillis() - timeCheck;
    LOGGER.trace("time 3: " + two + "ms");
    // had the call to form bean utils here, tbh
    for (int i = 0; i < repeatMax; i++) {
        DisplayItemGroupBean formGroup = new DisplayItemGroupBean();
        formGroup.setItemGroupBean(digb.getItemGroupBean());
        //            try {
        //                // set isShown here, tbh 04/2010
        //                boolean showGroup = getItemMetadataService().isGroupShown(digb.getGroupMetaBean().getId(), ecb);
        //                logger.debug("found show group for group meta bean " + digb.getGroupMetaBean().getId() + ": " + showGroup);
        //                if (showGroup) {
        //                    digb.getGroupMetaBean().setShowGroup(showGroup);
        //                    // we are only hiding, not showing (for now) tbh
        //                }
        //                // << tbh 04/2010
        //            } catch (OpenClinicaException oce) {
        //                // do nothing for right now, just store the bean
        //                logger.debug("throws an OCE for " + digb.getGroupMetaBean().getId());
        //            }
        formGroup.setGroupMetaBean(runDynamicsCheck(digb.getGroupMetaBean(), request));
        ItemGroupBean igb = digb.getItemGroupBean();
        // adding this code from below, since we want to pass a null values
        // list
        // in all cases of getDisplayBeansFromItems().
        // For adding null values to display items
        // FormBeanUtil formBeanUtil = new FormBeanUtil();
        // List<String> nullValuesList = new ArrayList<String>();
        // BWP>> Get a List<String> of any null values such as NA or NI
        // method returns null values as a List<String>
        // >>BWP
        // want to do deep copy here, so always get a fresh copy for items,
        // may use other better way to do, like clone
        // moved it back down here to fix another bug, tbh 12-3-2007
        List<DisplayItemBean> dibs = FormBeanUtil.getDisplayBeansFromItems(itBeans, getDataSource(), ecb, sb.getId(), nullValuesList, getServletContext());
        LOGGER.trace("+++count for dibs after deep copy: " + dibs.size());
        two = System.currentTimeMillis() - timeCheck;
        // created by rep model(add button)
        if (fp.getStartsWith(igb.getOid() + "_" + i + "input")) {
            formGroup.setInputId(igb.getOid() + "_" + i);
            if (i == 0) {
                // ordinal that will be saved into
                formGroup.setOrdinal(i);
            // DB
            } else {
                // from 0 again, the
                formGroup.setFormInputOrdinal(i);
            // ordinal from front
            // end page, needs to be
            // reprocessed
            }
            formGroup.setAuto(true);
            LOGGER.debug("1: set auto to TRUE for " + igb.getOid() + " " + i);
            dibs = processInputForGroupItem(fp, dibs, i, digb, true);
            LOGGER.trace("+++ group ordinal: " + i + " igb name " + igb.getName());
            formGroup.setItems(dibs);
            formGroups.add(formGroup);
        } else if (!StringUtil.isBlank(fp.getString(igb.getOid() + "_" + i + ".newRow"))) {
            // || (fp.getStartsWith(igb.getOid() + "_" + i + "input"))) {
            // the ordinal is the number got from [ ] and submitted by
            // repetition javascript
            formGroup.setInputId(igb.getOid() + "_" + i);
            if (i == 0) {
                // ordinal that will be saved into
                formGroup.setOrdinal(i);
            // DB
            } else {
                // from 0 again, the
                formGroup.setFormInputOrdinal(i);
            // ordinal from front
            // end page, needs to be
            // reprocessed
            }
            // String fieldName = igb.getOid() + "_" + i + this.getInputName(dib);
            // if (!StringUtil.isBlank(fp.getString(fieldName))) {
            // if (i != repeatMax) {
            // formGroup.setAuto(false);
            // logger.debug("set auto to false for " + igb.getOid() + " " + i);
            // } else {
            formGroup.setAuto(true);
            LOGGER.debug("2: set auto to TRUE for " + igb.getOid() + " " + i);
            dibs = processInputForGroupItem(fp, dibs, i, digb, true);
            LOGGER.trace("+++ group ordinal: " + i + " igb name " + igb.getName());
            formGroup.setItems(dibs);
            formGroups.add(formGroup);
        } else {
            secondLoopBreak++;
        }
        if (secondLoopBreak > 14) {
            LOGGER.debug("break second loop");
            break;
        }
    }
    // end of for (int i = 0; i < repeatMax; i++)
    LOGGER.debug("first loop: " + firstLoopBreak);
    LOGGER.debug("second loop: " + secondLoopBreak);
    LOGGER.trace("+++ starting to review groups 4: " + repeatMax);
    two = System.currentTimeMillis() - timeCheck;
    LOGGER.trace("time 4: " + two + "ms");
    // checks how many rows are manually created, not added by repetition
    // model
    int manualRows = getManualRows(formGroups);
    // for (int j = 0; j < formGroups.size(); j++) {
    // DisplayItemGroupBean formItemGroup = formGroups.get(j);
    // // logger.trace("begin formGroup Ordinal:" +
    // // formItemGroup.getOrdinal());
    // if (formItemGroup.isAuto() == false) {
    // manualRows = manualRows + 1;
    // }
    // }
    LOGGER.debug(" manual rows " + manualRows + " formGroup size " + formGroups.size());
    request.setAttribute("manualRows", new Integer(manualRows));
    // reset ordinal for the auto-created rows except for the first row
    for (int j = 0; j < formGroups.size(); j++) {
        DisplayItemGroupBean formItemGroup = formGroups.get(j);
        if (formItemGroup.isAuto() && formItemGroup.getFormInputOrdinal() > 0) {
            LOGGER.trace("+++ formInputOrdinal() " + formItemGroup.getFormInputOrdinal());
            // rows included in the model: first row, last existing row and
            // new rows
            // the rows in between are manually added
            // set the correct ordinal that will be saved into DB
            // the rows generated by model starts from 0, need to add the
            // number of manual rows to
            // get the correct ordinals, otherwise, we will have duplicate
            // ordinals like two ordinal 0
            formItemGroup.setOrdinal(formItemGroup.getFormInputOrdinal() + manualRows);
        }
    }
    LOGGER.trace("+++ starting to review groups 5: " + repeatMax);
    two = System.currentTimeMillis() - timeCheck;
    LOGGER.trace("time 5: " + two + "ms");
    // sort all the rows by ordinal
    Collections.sort(formGroups);
    LOGGER.trace("group row size:" + formGroups.size());
    // suppose we have 3 rows of data from db, the orginal order is 0,1,2,
    // repetition model will submit row number in [ ] like the following:
    // 0,1,2.. consecutive numbers, means no row removed in between
    // 0,1,3,4.. the 2rd row is removed, 3 and 4 are new rows
    int previous = -1;
    for (int j = 0; j < formGroups.size(); j++) {
        DisplayItemGroupBean formItemGroup = formGroups.get(j);
        LOGGER.trace("formGroup Ordinal:" + formItemGroup.getOrdinal());
        // tbh 08/2009
        if (formItemGroup.getOrdinal() == previous) {
            LOGGER.debug("found a match btw previous and ordinal");
            formItemGroup.setEditFlag("edit");
            formItemGroup.setOrdinal(previous + 1);
        // dbGroups.get(j).setEditFlag("edit");
        }
        // << tbh 08/2009
        if (formItemGroup.getOrdinal() > dbGroups.size() - 1) {
            formItemGroup.setEditFlag("add");
        } else {
            for (int i = 0; i < dbGroups.size(); i++) {
                DisplayItemGroupBean dbItemGroup = dbGroups.get(i);
                if (formItemGroup.getOrdinal() == i) {
                    // display, so need to insert this row, not update
                    if ("initial".equalsIgnoreCase(dbItemGroup.getEditFlag())) {
                        formItemGroup.setEditFlag("add");
                    } else {
                        dbItemGroup.setEditFlag("edit");
                        // need to set up item data id in order to update
                        for (DisplayItemBean dib : dbItemGroup.getItems()) {
                            ItemDataBean data = dib.getData();
                            for (DisplayItemBean formDib : formItemGroup.getItems()) {
                                if (formDib.getItem().getId() == dib.getItem().getId()) {
                                    formDib.getData().setId(data.getId());
                                    // this will save the data from IDE
                                    // complete, used only for DDE
                                    formDib.setDbData(dib.getData());
                                    // tbh removed below line so as not to
                                    // log so much, 112007
                                    LOGGER.debug("+++ +++ form dib get data set id " + data.getId());
                                    break;
                                }
                            }
                        }
                        formItemGroup.setEditFlag("edit");
                    }
                    // else
                    break;
                }
            }
        }
        // else
        previous = formItemGroup.getOrdinal();
    }
    LOGGER.trace("+++ === DB group row:" + dbGroups.size());
    LOGGER.trace("+++ === DB group contents: " + dbGroups.toString());
    // cannot get it.-jxu
    for (int i = 0; i < dbGroups.size(); i++) {
        DisplayItemGroupBean dbItemGroup = dbGroups.get(i);
        LOGGER.trace("+++ found edit flag of " + dbItemGroup.getEditFlag() + " for #" + dbItemGroup.getOrdinal());
        // logger.debug("+++ found edit flag of " + dbItemGroup.getEditFlag() + " for #" + dbItemGroup.getOrdinal() + ": " + i);
        if (!"edit".equalsIgnoreCase(dbItemGroup.getEditFlag()) && !"initial".equalsIgnoreCase(dbItemGroup.getEditFlag())) {
            // >> tbh if the group is not shown, we should not touch it 05/2010
            if (dbItemGroup.getGroupMetaBean().isShowGroup()) {
                LOGGER.trace("+++ one row removed, edit flag was " + dbItemGroup.getEditFlag());
                LOGGER.debug("+++ one row removed, edit flag was " + dbItemGroup.getEditFlag());
                dbItemGroup.setEditFlag("remove");
            }
        // << tbh
        }
    }
    LOGGER.debug("+++ about to return form groups: " + formGroups.toString());
    for (int j = 0; j < formGroups.size(); j++) {
        DisplayItemGroupBean formGroup = formGroups.get(j);
        formGroup.setIndex(j);
    }
    return formGroups;
}