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Example 21 with StudyGroupClassDAO

use of org.akaza.openclinica.dao.managestudy.StudyGroupClassDAO in project OpenClinica by OpenClinica.

the class ListEventsForSubjectServlet method processRequest.

@Override
public void processRequest() throws Exception {
    FormProcessor fp = new FormProcessor(request);
    // checks which module the requests are from
    String module = fp.getString(MODULE);
    request.setAttribute(MODULE, module);
    String pageNumber = fp.getString(ListStudySubjectServlet.SUBJECT_PAGE_NUMBER);
    String filterKeyword = fp.getString(ListStudySubjectServlet.FILTER_KEYWORD);
    String tmpSearch = fp.getString(ListStudySubjectServlet.SEARCH_SUBMITTED);
    boolean searchSubmitted = !(tmpSearch == null || "".equalsIgnoreCase(tmpSearch)) && !"".equalsIgnoreCase(filterKeyword);
    SubjectMatrixUtil matrixUtil = new SubjectMatrixUtil();
    String query = matrixUtil.createPaginatingQuery(pageNumber);
    StringBuilder extendedQuery = new StringBuilder(query);
    // URL encode the search keyword, since it will be a parameter in the
    // URL
    String filterKeywordURLEncode = java.net.URLEncoder.encode(filterKeyword, "UTF-8");
    if (searchSubmitted) {
        extendedQuery.append("&ebl_sortColumnInd=0&submitted=1&ebl_sortAscending=1&ebl_filtered=1");
        extendedQuery.append("&").append(ListStudySubjectServlet.FILTER_KEYWORD).append("=").append(filterKeywordURLEncode);
    }
    request.setAttribute(ListStudySubjectServlet.PAGINATING_QUERY, extendedQuery.toString());
    int definitionId = fp.getInt("defId");
    int tabId = fp.getInt("tab");
    if (definitionId <= 0) {
        addPageMessage(respage.getString("please_choose_an_ED_ta_to_vies_details"));
        forwardPage(Page.LIST_STUDY_SUBJECTS);
        return;
    }
    StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
    StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(definitionId);
    StudySubjectDAO sdao = new StudySubjectDAO(sm.getDataSource());
    StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    SubjectGroupMapDAO sgmdao = new SubjectGroupMapDAO(sm.getDataSource());
    StudyGroupClassDAO sgcdao = new StudyGroupClassDAO(sm.getDataSource());
    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
    EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
    CRFDAO crfdao = new CRFDAO(sm.getDataSource());
    // find all the groups in the current study
    ArrayList studyGroupClasses = sgcdao.findAllActiveByStudy(currentStudy);
    // information for the event tabs
    ArrayList allDefs = seddao.findAllActiveByStudy(currentStudy);
    boolean isASite = false;
    if (currentStudy.getParentStudyId() > 0) {
        StudyDAO stdao = new StudyDAO(sm.getDataSource());
        StudyBean parent = (StudyBean) stdao.findByPK(currentStudy.getParentStudyId());
        allDefs = seddao.findAllActiveByStudy(parent);
    }
    ArrayList eventDefinitionCRFs = (ArrayList) edcdao.findAllActiveByEventDefinitionId(this.currentStudy, definitionId);
    for (int i = 0; i < eventDefinitionCRFs.size(); i++) {
        EventDefinitionCRFBean edc = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
        CRFBean crf = (CRFBean) crfdao.findByPK(edc.getCrfId());
        edc.setCrf(crf);
    }
    request.setAttribute("studyGroupClasses", studyGroupClasses);
    request.setAttribute("allDefsArray", allDefs);
    request.setAttribute("allDefsNumber", new Integer(allDefs.size()));
    request.setAttribute("groupSize", new Integer(studyGroupClasses.size()));
    request.setAttribute("eventDefCRFSize", new Integer(eventDefinitionCRFs.size()));
    request.setAttribute("tabId", new Integer(tabId));
    request.setAttribute("studyEventDef", sed);
    request.setAttribute("eventDefCRFs", eventDefinitionCRFs);
    // find all the subjects in current study
    ArrayList subjects = sdao.findAllByStudyId(currentStudy.getId());
    ArrayList displayStudySubs = new ArrayList();
    for (int i = 0; i < subjects.size(); i++) {
        StudySubjectBean studySub = (StudySubjectBean) subjects.get(i);
        ArrayList groups = (ArrayList) sgmdao.findAllByStudySubject(studySub.getId());
        ArrayList subGClasses = new ArrayList();
        for (int j = 0; j < studyGroupClasses.size(); j++) {
            StudyGroupClassBean sgc = (StudyGroupClassBean) studyGroupClasses.get(j);
            boolean hasClass = false;
            for (int k = 0; k < groups.size(); k++) {
                SubjectGroupMapBean sgmb = (SubjectGroupMapBean) groups.get(k);
                if (sgmb.getGroupClassName().equalsIgnoreCase(sgc.getName())) {
                    subGClasses.add(sgmb);
                    hasClass = true;
                    break;
                }
            }
            if (!hasClass) {
                subGClasses.add(new SubjectGroupMapBean());
            }
        }
        // find all eventcrfs for each event, for each event tab
        ArrayList displaySubjectEvents = new ArrayList();
        ArrayList<DisplayStudyEventBean> displayEvents = new ArrayList<DisplayStudyEventBean>();
        ArrayList events = sedao.findAllByStudySubjectAndDefinition(studySub, sed);
        for (int k = 0; k < events.size(); k++) {
            StudyEventBean seb = (StudyEventBean) events.get(k);
            DisplayStudyEventBean dseb = ListStudySubjectServlet.getDisplayStudyEventsForStudySubject(studySub, seb, sm.getDataSource(), ub, currentRole, this.currentStudy);
            // ArrayList eventCRFs = ecdao.findAllByStudyEvent(seb);
            // ArrayList al =
            // ViewStudySubjectServlet.getUncompletedCRFs(sm.getDataSource(),
            // eventDefinitionCRFs, eventCRFs);
            // dseb.getUncompletedCRFs().add(al);
            displayEvents.add(dseb);
        }
        ArrayList al = new ArrayList();
        for (int k = 0; k < displayEvents.size(); k++) {
            DisplayStudyEventBean dseb = displayEvents.get(k);
            ArrayList eventCRFs = dseb.getDisplayEventCRFs();
            for (int a = 0; a < eventDefinitionCRFs.size(); a++) {
                EventDefinitionCRFBean edc = (EventDefinitionCRFBean) eventDefinitionCRFs.get(a);
                int crfId = edc.getCrfId();
                boolean hasCRF = false;
                for (int b = 0; b < eventCRFs.size(); b++) {
                    DisplayEventCRFBean decb = (DisplayEventCRFBean) eventCRFs.get(b);
                    // decb.getStage().getName() );
                    if (decb.getEventCRF().getCrf().getId() == crfId) {
                        dseb.getAllEventCRFs().add(decb);
                        // logger.info("hasCRf" + crfId +
                        // decb.getEventCRF().getCrf().getName());
                        hasCRF = true;
                        break;
                    }
                }
                if (hasCRF == false) {
                    DisplayEventCRFBean db = new DisplayEventCRFBean();
                    db.setEventDefinitionCRF(edc);
                    db.getEventDefinitionCRF().setCrf(edc.getCrf());
                    dseb.getAllEventCRFs().add(db);
                // logger.info("noCRf" + crfId);
                }
            }
            // Issue 3212 BWP <<
            if (currentStudy.getParentStudyId() > 0) {
                // check each eventDefCRFBean and set its isHidden property
                // to true, if its
                // persistent/database-derived hideCrf is true (domain rule:
                // hide the CRF from users logged into a site)
                HideCRFManager hideCRFManager = HideCRFManager.createHideCRFManager();
                hideCRFManager.optionallyCheckHideCRFProperty(dseb);
                // remove a DisplayEventCRFBean from a DisplayStudyEventBean
                // in the list
                // if it contains a hidden CRF in its event definition
                hideCRFManager.removeHiddenEventCRF(dseb);
                // generate a boolean request attribute indicating whether
                // any of the CRFs
                // should be hidden
                boolean hideCRFs = hideCRFManager.studyEventHasAHideCRFProperty(dseb);
                request.setAttribute("hideCRFs", hideCRFs);
            }
        // >>
        }
        DisplayStudySubjectBean dssb = new DisplayStudySubjectBean();
        dssb.setStudySubject(studySub);
        dssb.setStudyGroups(subGClasses);
        dssb.setStudyEvents(displayEvents);
        if (definitionId > 0) {
            dssb.setSedId(definitionId);
        } else {
            dssb.setSedId(-1);
        }
        displayStudySubs.add(dssb);
    }
    EntityBeanTable table = fp.getEntityBeanTable();
    ArrayList allStudyRows = DisplayStudySubjectEventsRow.generateRowsFromBeans(displayStudySubs);
    ArrayList columnArray = new ArrayList();
    columnArray.add(resword.getString("ID"));
    columnArray.add(resword.getString("subject_status"));
    columnArray.add(resword.getString("gender"));
    for (int i = 0; i < studyGroupClasses.size(); i++) {
        StudyGroupClassBean sgc = (StudyGroupClassBean) studyGroupClasses.get(i);
        columnArray.add(sgc.getName());
    }
    // columnArray.add("Event Sequence");
    columnArray.add(resword.getString("event_status"));
    columnArray.add(resword.getString("event_date"));
    // Issue 3212 BWP <<
    HideCRFManager hideCRFMgr = HideCRFManager.createHideCRFManager();
    hideCRFMgr.hideSpecifiedEventCRFDefBeans(eventDefinitionCRFs);
    for (int i = 0; i < eventDefinitionCRFs.size(); i++) {
        EventDefinitionCRFBean edc = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
        // Issue 3212 BWP <<
        if (!(currentStudy.getParentStudyId() > 0)) {
            columnArray.add(edc.getCrf().getName());
        } else {
            if (!edc.isHideCrf()) {
                columnArray.add(edc.getCrf().getName());
            }
        }
    // >>
    }
    columnArray.add(resword.getString("actions"));
    String[] columns = new String[columnArray.size()];
    columnArray.toArray(columns);
    table.setColumns(new ArrayList(Arrays.asList(columns)));
    table.setQuery("ListEventsForSubject?module=" + module + "&defId=" + definitionId + "&tab=" + tabId, new HashMap());
    table.hideColumnLink(columnArray.size() - 1);
    // if(currentStudy.getStatus().isAvailable()){
    // table.addLink(resword.getString("add_new_subject"), "AddNewSubject");
    // }
    table.setRows(allStudyRows);
    if (filterKeyword != null && !"".equalsIgnoreCase(filterKeyword)) {
        table.setKeywordFilter(filterKeyword);
    }
    table.computeDisplay();
    request.setAttribute("table", table);
    forwardPage(Page.LIST_EVENTS_FOR_SUBJECT);
}
Also used : SubjectGroupMapBean(org.akaza.openclinica.bean.submit.SubjectGroupMapBean) HashMap(java.util.HashMap) StudyGroupClassDAO(org.akaza.openclinica.dao.managestudy.StudyGroupClassDAO) EntityBeanTable(org.akaza.openclinica.web.bean.EntityBeanTable) ArrayList(java.util.ArrayList) StudyEventDefinitionBean(org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean) StudyEventBean(org.akaza.openclinica.bean.managestudy.StudyEventBean) DisplayStudyEventBean(org.akaza.openclinica.bean.managestudy.DisplayStudyEventBean) DisplayStudySubjectBean(org.akaza.openclinica.bean.managestudy.DisplayStudySubjectBean) StudyEventDAO(org.akaza.openclinica.dao.managestudy.StudyEventDAO) StudyGroupClassBean(org.akaza.openclinica.bean.managestudy.StudyGroupClassBean) StudyDAO(org.akaza.openclinica.dao.managestudy.StudyDAO) EventCRFDAO(org.akaza.openclinica.dao.submit.EventCRFDAO) EventDefinitionCRFDAO(org.akaza.openclinica.dao.managestudy.EventDefinitionCRFDAO) EventCRFDAO(org.akaza.openclinica.dao.submit.EventCRFDAO) CRFDAO(org.akaza.openclinica.dao.admin.CRFDAO) SubjectGroupMapDAO(org.akaza.openclinica.dao.submit.SubjectGroupMapDAO) FormProcessor(org.akaza.openclinica.control.form.FormProcessor) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) EventDefinitionCRFDAO(org.akaza.openclinica.dao.managestudy.EventDefinitionCRFDAO) StudySubjectDAO(org.akaza.openclinica.dao.managestudy.StudySubjectDAO) HideCRFManager(org.akaza.openclinica.service.crfdata.HideCRFManager) CRFBean(org.akaza.openclinica.bean.admin.CRFBean) DisplayEventCRFBean(org.akaza.openclinica.bean.submit.DisplayEventCRFBean) EventDefinitionCRFBean(org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean) DisplayEventCRFBean(org.akaza.openclinica.bean.submit.DisplayEventCRFBean) DisplayStudyEventBean(org.akaza.openclinica.bean.managestudy.DisplayStudyEventBean) StudyEventDefinitionDAO(org.akaza.openclinica.dao.managestudy.StudyEventDefinitionDAO) DisplayStudySubjectBean(org.akaza.openclinica.bean.managestudy.DisplayStudySubjectBean) StudySubjectBean(org.akaza.openclinica.bean.managestudy.StudySubjectBean) EventDefinitionCRFBean(org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean)

Example 22 with StudyGroupClassDAO

use of org.akaza.openclinica.dao.managestudy.StudyGroupClassDAO in project OpenClinica by OpenClinica.

the class ListDiscNotesSubjectServlet method processRequest.

// < ResourceBundleresexception,respage;
@Override
protected void processRequest() throws Exception {
    String module = request.getParameter("module");
    String moduleStr = "manage";
    if (module != null && module.trim().length() > 0) {
        if ("submit".equals(module)) {
            request.setAttribute("module", "submit");
            moduleStr = "submit";
        } else if ("admin".equals(module)) {
            request.setAttribute("module", "admin");
            moduleStr = "admin";
        } else {
            request.setAttribute("module", "manage");
        }
    }
    // << tbh 02/2010 filter out the entire module parameter to catch injections
    // BWP 3098>> close the info side panel and show icons
    request.setAttribute("closeInfoShowIcons", true);
    // <<
    // Determine whether to limit the displayed DN's to a certain DN type
    int resolutionStatus = 0;
    try {
        resolutionStatus = Integer.parseInt(request.getParameter("resolutionStatus"));
    } catch (NumberFormatException nfe) {
        // Show all DN's
        resolutionStatus = -1;
    }
    // Determine whether we already have a collection of resolutionStatus
    // Ids, and if not
    // create a new attribute. If there is no resolution status, then the
    // Set object should be cleared,
    // because we do not have to save a set of filter IDs.
    boolean hasAResolutionStatus = resolutionStatus >= 1 && resolutionStatus <= 5;
    Set<Integer> resolutionStatusIds = (HashSet) session.getAttribute(RESOLUTION_STATUS);
    // remove the session if there is no resolution status
    if (!hasAResolutionStatus && resolutionStatusIds != null) {
        session.removeAttribute(RESOLUTION_STATUS);
        resolutionStatusIds = null;
    }
    if (hasAResolutionStatus) {
        if (resolutionStatusIds == null) {
            resolutionStatusIds = new HashSet<Integer>();
        }
        resolutionStatusIds.add(resolutionStatus);
        session.setAttribute(RESOLUTION_STATUS, resolutionStatusIds);
    }
    int discNoteType = 0;
    try {
        discNoteType = Integer.parseInt(request.getParameter("type"));
    } catch (NumberFormatException nfe) {
        // Show all DN's
        discNoteType = -1;
    }
    request.setAttribute(DISCREPANCY_NOTE_TYPE, discNoteType);
    DiscrepancyNoteUtil discNoteUtil = new DiscrepancyNoteUtil();
    // Generate a summary of how we are filtering;
    Map<String, List<String>> filterSummary = discNoteUtil.generateFilterSummary(discNoteType, resolutionStatusIds);
    if (!filterSummary.isEmpty()) {
        request.setAttribute(FILTER_SUMMARY, filterSummary);
    }
    locale = LocaleResolver.getLocale(request);
    StudyBean sbean = (StudyBean) session.getAttribute("study");
    //List<DiscrepancyNoteBean> allDiscNotes = discNoteUtil.getThreadedDNotesForStudy(sbean, resolutionStatusIds, sm.getDataSource(), discNoteType, true);
    //Map stats = discNoteUtil.generateDiscNoteSummary(allDiscNotes);
    Map stats = discNoteUtil.generateDiscNoteSummaryRefactored(sm.getDataSource(), currentStudy, resolutionStatusIds, discNoteType);
    request.setAttribute("summaryMap", stats);
    Set mapKeys = stats.keySet();
    request.setAttribute("mapKeys", mapKeys);
    // < resword =
    // ResourceBundle.getBundle("org.akaza.openclinica.i18n.words",locale);
    StudyDAO studyDAO = new StudyDAO(sm.getDataSource());
    StudySubjectDAO sdao = new StudySubjectDAO(sm.getDataSource());
    StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
    SubjectGroupMapDAO sgmdao = new SubjectGroupMapDAO(sm.getDataSource());
    StudyGroupClassDAO sgcdao = new StudyGroupClassDAO(sm.getDataSource());
    StudyGroupDAO sgdao = new StudyGroupDAO(sm.getDataSource());
    StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
    EventCRFDAO edao = new EventCRFDAO(sm.getDataSource());
    EventDefinitionCRFDAO eddao = new EventDefinitionCRFDAO(sm.getDataSource());
    SubjectDAO subdao = new SubjectDAO(sm.getDataSource());
    DiscrepancyNoteDAO dnDAO = new DiscrepancyNoteDAO(sm.getDataSource());
    ListDiscNotesSubjectTableFactory factory = new ListDiscNotesSubjectTableFactory(ResourceBundleProvider.getTermsBundle(locale));
    factory.setStudyEventDefinitionDao(seddao);
    factory.setSubjectDAO(subdao);
    factory.setStudySubjectDAO(sdao);
    factory.setStudyEventDAO(sedao);
    factory.setStudyBean(currentStudy);
    factory.setStudyGroupClassDAO(sgcdao);
    factory.setSubjectGroupMapDAO(sgmdao);
    factory.setStudyDAO(studyDAO);
    factory.setCurrentRole(currentRole);
    factory.setCurrentUser(ub);
    factory.setEventCRFDAO(edao);
    factory.setEventDefintionCRFDAO(eddao);
    factory.setStudyGroupDAO(sgdao);
    factory.setDiscrepancyNoteDAO(dnDAO);
    factory.setModule(moduleStr);
    factory.setDiscNoteType(discNoteType);
    // factory.setStudyHasDiscNotes(allDiscNotes != null &&
    // !allDiscNotes.isEmpty());
    factory.setResolutionStatus(resolutionStatus);
    factory.setResolutionStatusIds(resolutionStatusIds);
    factory.setResword(ResourceBundleProvider.getWordsBundle(locale));
    String listDiscNotesHtml = factory.createTable(request, response).render();
    request.setAttribute("listDiscNotesHtml", listDiscNotesHtml);
    forwardPage(getJSP());
}
Also used : HashSet(java.util.HashSet) Set(java.util.Set) ListDiscNotesSubjectTableFactory(org.akaza.openclinica.control.submit.ListDiscNotesSubjectTableFactory) StudyGroupClassDAO(org.akaza.openclinica.dao.managestudy.StudyGroupClassDAO) StudySubjectDAO(org.akaza.openclinica.dao.managestudy.StudySubjectDAO) SubjectDAO(org.akaza.openclinica.dao.submit.SubjectDAO) StudyGroupDAO(org.akaza.openclinica.dao.managestudy.StudyGroupDAO) StudyEventDAO(org.akaza.openclinica.dao.managestudy.StudyEventDAO) List(java.util.List) DiscrepancyNoteUtil(org.akaza.openclinica.service.DiscrepancyNoteUtil) StudyDAO(org.akaza.openclinica.dao.managestudy.StudyDAO) EventCRFDAO(org.akaza.openclinica.dao.submit.EventCRFDAO) HashSet(java.util.HashSet) DiscrepancyNoteDAO(org.akaza.openclinica.dao.managestudy.DiscrepancyNoteDAO) SubjectGroupMapDAO(org.akaza.openclinica.dao.submit.SubjectGroupMapDAO) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) EventDefinitionCRFDAO(org.akaza.openclinica.dao.managestudy.EventDefinitionCRFDAO) StudySubjectDAO(org.akaza.openclinica.dao.managestudy.StudySubjectDAO) StudyEventDefinitionDAO(org.akaza.openclinica.dao.managestudy.StudyEventDefinitionDAO) Map(java.util.Map)

Example 23 with StudyGroupClassDAO

use of org.akaza.openclinica.dao.managestudy.StudyGroupClassDAO in project OpenClinica by OpenClinica.

the class CreateSubjectGroupClassServlet method submitGroup.

/**
     * Saves study group information into database
     *
     * @throws OpenClinicaException
     */
private void submitGroup() throws OpenClinicaException, IOException {
    StudyGroupClassBean group = (StudyGroupClassBean) session.getAttribute("group");
    ArrayList studyGroups = (ArrayList) session.getAttribute("studyGroups");
    StudyGroupClassDAO sgcdao = new StudyGroupClassDAO(sm.getDataSource());
    group.setStudyId(currentStudy.getId());
    group.setOwner(ub);
    group.setStatus(Status.AVAILABLE);
    group = (StudyGroupClassBean) sgcdao.create(group);
    if (!group.isActive()) {
        addPageMessage(respage.getString("the_subject_group_class_not_created_database"));
    } else {
        StudyGroupDAO sgdao = new StudyGroupDAO(sm.getDataSource());
        for (int i = 0; i < studyGroups.size(); i++) {
            StudyGroupBean sg = (StudyGroupBean) studyGroups.get(i);
            sg.setStudyGroupClassId(group.getId());
            sg.setOwner(ub);
            sg.setStatus(Status.AVAILABLE);
            sgdao.create(sg);
        }
        addPageMessage(respage.getString("the_subject_group_class_created_succesfully"));
    }
    ArrayList pageMessages = (ArrayList) request.getAttribute(PAGE_MESSAGE);
    session.setAttribute("pageMessages", pageMessages);
    response.sendRedirect(request.getContextPath() + Page.MANAGE_STUDY_MODULE.getFileName());
}
Also used : StudyGroupClassDAO(org.akaza.openclinica.dao.managestudy.StudyGroupClassDAO) StudyGroupClassBean(org.akaza.openclinica.bean.managestudy.StudyGroupClassBean) ArrayList(java.util.ArrayList) StudyGroupDAO(org.akaza.openclinica.dao.managestudy.StudyGroupDAO) StudyGroupBean(org.akaza.openclinica.bean.managestudy.StudyGroupBean)

Example 24 with StudyGroupClassDAO

use of org.akaza.openclinica.dao.managestudy.StudyGroupClassDAO in project OpenClinica by OpenClinica.

the class CoreSecureController method getStudyGroupClassesByCurrentStudy.

public ArrayList getStudyGroupClassesByCurrentStudy(HttpServletRequest request) {
    StudyDAO studyDAO = new StudyDAO(getDataSource());
    StudyGroupClassDAO studyGroupClassDAO = new StudyGroupClassDAO(getDataSource());
    StudyGroupDAO studyGroupDAO = new StudyGroupDAO(getDataSource());
    StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
    int parentStudyId = currentStudy.getParentStudyId();
    ArrayList studyGroupClasses = new ArrayList();
    if (parentStudyId > 0) {
        StudyBean parentStudy = (StudyBean) studyDAO.findByPK(parentStudyId);
        studyGroupClasses = studyGroupClassDAO.findAllActiveByStudy(parentStudy);
    } else {
        parentStudyId = currentStudy.getId();
        studyGroupClasses = studyGroupClassDAO.findAllActiveByStudy(currentStudy);
    }
    for (int i = 0; i < studyGroupClasses.size(); i++) {
        StudyGroupClassBean sgc = (StudyGroupClassBean) studyGroupClasses.get(i);
        ArrayList groups = studyGroupDAO.findAllByGroupClass(sgc);
        sgc.setStudyGroups(groups);
    }
    return studyGroupClasses;
}
Also used : StudyGroupClassDAO(org.akaza.openclinica.dao.managestudy.StudyGroupClassDAO) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) ArrayList(java.util.ArrayList) StudyGroupClassBean(org.akaza.openclinica.bean.managestudy.StudyGroupClassBean) StudyGroupDAO(org.akaza.openclinica.dao.managestudy.StudyGroupDAO) StudyDAO(org.akaza.openclinica.dao.managestudy.StudyDAO)

Example 25 with StudyGroupClassDAO

use of org.akaza.openclinica.dao.managestudy.StudyGroupClassDAO in project OpenClinica by OpenClinica.

the class EditSelectedServlet method processRequest.

@Override
public void processRequest() throws Exception {
    FormProcessor fp = new FormProcessor(request);
    boolean selectAll = fp.getBoolean("all");
    boolean selectAllItemsGroupsAttrs = fp.getBoolean("allAttrsAndItems");
    // BWP 3095: Only show a "select all items" like on a side info panel if
    // it
    // is not part of the EditSelected-related JSP>>
    request.setAttribute("EditSelectedSubmitted", true);
    // <<
    ItemDAO idao = new ItemDAO(sm.getDataSource());
    // CRFDAO crfdao = new CRFDAO(sm.getDataSource());
    ItemFormMetadataDAO imfdao = new ItemFormMetadataDAO(sm.getDataSource());
    CRFDAO crfdao = new CRFDAO(sm.getDataSource());
    DatasetBean db = (DatasetBean) session.getAttribute("newDataset");
    if (db == null) {
        db = new DatasetBean();
        session.setAttribute("newDataset", db);
    }
    // << tbh
    // HashMap eventlist = (HashMap) request.getAttribute("eventlist");
    // if (eventlist == null) {
    // System.out.println("TTTTT found the second hashmap!");
    HashMap eventlist = (LinkedHashMap) session.getAttribute("eventsForCreateDataset");
    // }
    ArrayList<String> ids = CreateDatasetServlet.allSedItemIdsInStudy(eventlist, crfdao, idao);
    // >> tbh 11/09, need to fill in a session variable
    if (selectAll) {
        logger.info("select all..........");
        db = selectAll(db);
        MessageFormat msg = new MessageFormat("");
        msg.setLocale(locale);
        msg.applyPattern(respage.getString("choose_include_all_items_dataset"));
        Object[] arguments = { ids.size() };
        addPageMessage(msg.format(arguments));
    // addPageMessage("You choose to include all items in current study
    // for the dataset, " +db.getItemIds().size() + " items total.");
    }
    if (selectAllItemsGroupsAttrs) {
        logger.info("select everything....");
        db = selectAll(db);
        db.setShowCRFcompletionDate(true);
        db.setShowCRFinterviewerDate(true);
        db.setShowCRFinterviewerName(true);
        db.setShowCRFstatus(true);
        db.setShowCRFversion(true);
        db.setShowEventEnd(true);
        db.setShowEventEndTime(true);
        db.setShowEventLocation(true);
        db.setShowEventStart(true);
        db.setShowEventStartTime(true);
        db.setShowEventStatus(true);
        db.setShowSubjectAgeAtEvent(true);
        db.setShowSubjectDob(true);
        db.setShowSubjectGender(true);
        db.setShowSubjectGroupInformation(true);
        db.setShowSubjectStatus(true);
        db.setShowSubjectUniqueIdentifier(true);
        // select all groups
        ArrayList sgclasses = (ArrayList) session.getAttribute("allSelectedGroups");
        //
        ArrayList newsgclasses = new ArrayList();
        StudyDAO studydao = new StudyDAO(sm.getDataSource());
        StudyGroupClassDAO sgclassdao = new StudyGroupClassDAO(sm.getDataSource());
        StudyBean theStudy = (StudyBean) studydao.findByPK(sm.getUserBean().getActiveStudyId());
        sgclasses = sgclassdao.findAllActiveByStudy(theStudy);
        for (int i = 0; i < sgclasses.size(); i++) {
            StudyGroupClassBean sgclass = (StudyGroupClassBean) sgclasses.get(i);
            sgclass.setSelected(true);
            newsgclasses.add(sgclass);
        }
        session.setAttribute("allSelectedGroups", newsgclasses);
        request.setAttribute("allSelectedGroups", newsgclasses);
    }
    session.setAttribute("newDataset", db);
    HashMap events = (HashMap) session.getAttribute(CreateDatasetServlet.EVENTS_FOR_CREATE_DATASET);
    if (events == null) {
        events = new HashMap();
    }
    ArrayList allSelectItems = selectAll ? selectAll(events, crfdao, idao) : ViewSelectedServlet.getAllSelected(db, idao, imfdao);
    // >> tbh
    session.setAttribute("numberOfStudyItems", new Integer(ids.size()).toString());
    // << tbh 11/2009
    session.setAttribute("allSelectedItems", allSelectItems);
    setUpStudyGroups();
    forwardPage(Page.CREATE_DATASET_VIEW_SELECTED);
}
Also used : CRFDAO(org.akaza.openclinica.dao.admin.CRFDAO) MessageFormat(java.text.MessageFormat) ItemDAO(org.akaza.openclinica.dao.submit.ItemDAO) HashMap(java.util.HashMap) LinkedHashMap(java.util.LinkedHashMap) FormProcessor(org.akaza.openclinica.control.form.FormProcessor) StudyGroupClassDAO(org.akaza.openclinica.dao.managestudy.StudyGroupClassDAO) DatasetBean(org.akaza.openclinica.bean.extract.DatasetBean) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) ArrayList(java.util.ArrayList) LinkedHashMap(java.util.LinkedHashMap) StudyGroupClassBean(org.akaza.openclinica.bean.managestudy.StudyGroupClassBean) StudyDAO(org.akaza.openclinica.dao.managestudy.StudyDAO) ItemFormMetadataDAO(org.akaza.openclinica.dao.submit.ItemFormMetadataDAO)

Aggregations

StudyGroupClassDAO (org.akaza.openclinica.dao.managestudy.StudyGroupClassDAO)27 ArrayList (java.util.ArrayList)23 StudyGroupClassBean (org.akaza.openclinica.bean.managestudy.StudyGroupClassBean)21 StudyDAO (org.akaza.openclinica.dao.managestudy.StudyDAO)20 StudyBean (org.akaza.openclinica.bean.managestudy.StudyBean)19 StudyGroupDAO (org.akaza.openclinica.dao.managestudy.StudyGroupDAO)17 FormProcessor (org.akaza.openclinica.control.form.FormProcessor)12 SubjectGroupMapDAO (org.akaza.openclinica.dao.submit.SubjectGroupMapDAO)10 HashMap (java.util.HashMap)8 SubjectGroupMapBean (org.akaza.openclinica.bean.submit.SubjectGroupMapBean)8 StudySubjectDAO (org.akaza.openclinica.dao.managestudy.StudySubjectDAO)8 StudySubjectBean (org.akaza.openclinica.bean.managestudy.StudySubjectBean)7 StudyEventDefinitionDAO (org.akaza.openclinica.dao.managestudy.StudyEventDefinitionDAO)7 StudyGroupBean (org.akaza.openclinica.bean.managestudy.StudyGroupBean)6 DatasetBean (org.akaza.openclinica.bean.extract.DatasetBean)5 StudyEventDefinitionBean (org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean)5 StudyEventDAO (org.akaza.openclinica.dao.managestudy.StudyEventDAO)5 Date (java.util.Date)4 StudyEventBean (org.akaza.openclinica.bean.managestudy.StudyEventBean)4 EventDefinitionCRFDAO (org.akaza.openclinica.dao.managestudy.EventDefinitionCRFDAO)4