Examples with EventCRFDAO org.akaza.openclinica.dao.submit.EventCRFDAO used on opensource projects

Example 11 with EventCRFDAO

use of org.akaza.openclinica.dao.submit.EventCRFDAO in project OpenClinica by OpenClinica.

the class RemoveStudyServlet method processRequest.

@Override
public void processRequest() throws Exception {
    StudyDAO sdao = new StudyDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    int studyId = fp.getInt("id");
    StudyBean study = (StudyBean) sdao.findByPK(studyId);
    // find all sites
    ArrayList sites = (ArrayList) sdao.findAllByParent(studyId);
    // find all user and roles in the study, include ones in sites
    UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
    ArrayList userRoles = udao.findAllByStudyId(studyId);
    // find all subjects in the study, include ones in sites
    StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
    ArrayList subjects = ssdao.findAllByStudy(study);
    // find all events in the study, include ones in sites
    StudyEventDefinitionDAO sefdao = new StudyEventDefinitionDAO(sm.getDataSource());
    ArrayList definitions = sefdao.findAllByStudy(study);
    String action = request.getParameter("action");
    if (studyId == 0) {
        addPageMessage(respage.getString("please_choose_a_study_to_remove"));
        forwardPage(Page.STUDY_LIST_SERVLET);
    } else {
        if ("confirm".equalsIgnoreCase(action)) {
            request.setAttribute("studyToRemove", study);
            request.setAttribute("sitesToRemove", sites);
            request.setAttribute("userRolesToRemove", userRoles);
            request.setAttribute("subjectsToRemove", subjects);
            request.setAttribute("definitionsToRemove", definitions);
            forwardPage(Page.REMOVE_STUDY);
        } else {
            logger.info("submit to remove the study");
            // change all statuses to unavailable
            StudyDAO studao = new StudyDAO(sm.getDataSource());
            study.setOldStatus(study.getStatus());
            study.setStatus(Status.DELETED);
            study.setUpdater(ub);
            study.setUpdatedDate(new Date());
            studao.update(study);
            // remove all sites
            for (int i = 0; i < sites.size(); i++) {
                StudyBean site = (StudyBean) sites.get(i);
                if (!site.getStatus().equals(Status.DELETED)) {
                    site.setOldStatus(site.getStatus());
                    site.setStatus(Status.AUTO_DELETED);
                    site.setUpdater(ub);
                    site.setUpdatedDate(new Date());
                    sdao.update(site);
                }
            }
            // remove all users and roles
            for (int i = 0; i < userRoles.size(); i++) {
                StudyUserRoleBean role = (StudyUserRoleBean) userRoles.get(i);
                logger.info("remove user role" + role.getName());
                if (!role.getStatus().equals(Status.DELETED)) {
                    role.setStatus(Status.AUTO_DELETED);
                    role.setUpdater(ub);
                    role.setUpdatedDate(new Date());
                    udao.updateStudyUserRole(role, role.getUserName());
                }
            }
            // YW << bug fix for that current active study has been deleted
            if (study.getId() == currentStudy.getId()) {
                currentStudy.setStatus(Status.DELETED);
                currentRole.setStatus(Status.DELETED);
            } else // (auto-removed)
            if (currentStudy.getParentStudyId() == study.getId()) {
                currentStudy.setStatus(Status.AUTO_DELETED);
                // we may need handle this later?
                currentRole.setStatus(Status.DELETED);
            }
            // remove all subjects
            for (int i = 0; i < subjects.size(); i++) {
                StudySubjectBean subject = (StudySubjectBean) subjects.get(i);
                if (!subject.getStatus().equals(Status.DELETED)) {
                    subject.setStatus(Status.AUTO_DELETED);
                    subject.setUpdater(ub);
                    subject.setUpdatedDate(new Date());
                    ssdao.update(subject);
                }
            }
            // remove all study_group_class
            // changed by jxu on 08-31-06, to fix the problem of no study_id
            // in study_group table
            StudyGroupClassDAO sgcdao = new StudyGroupClassDAO(sm.getDataSource());
            StudyGroupDAO sgdao = new StudyGroupDAO(sm.getDataSource());
            SubjectGroupMapDAO sgmdao = new SubjectGroupMapDAO(sm.getDataSource());
            // YW 09-27-2007, enable status updating for StudyGroupClassBean
            ArrayList groups = sgcdao.findAllByStudy(study);
            for (int i = 0; i < groups.size(); i++) {
                StudyGroupClassBean group = (StudyGroupClassBean) groups.get(i);
                if (!group.getStatus().equals(Status.DELETED)) {
                    group.setStatus(Status.AUTO_DELETED);
                    group.setUpdater(ub);
                    group.setUpdatedDate(new Date());
                    sgcdao.update(group);
                    // all subject_group_map
                    ArrayList subjectGroupMaps = sgmdao.findAllByStudyGroupClassId(group.getId());
                    for (int j = 0; j < subjectGroupMaps.size(); j++) {
                        SubjectGroupMapBean sgMap = (SubjectGroupMapBean) subjectGroupMaps.get(j);
                        if (!sgMap.getStatus().equals(Status.DELETED)) {
                            sgMap.setStatus(Status.AUTO_DELETED);
                            sgMap.setUpdater(ub);
                            sgMap.setUpdatedDate(new Date());
                            sgmdao.update(sgMap);
                        }
                    }
                }
            }
            ArrayList groupClasses = sgcdao.findAllActiveByStudy(study);
            for (int i = 0; i < groupClasses.size(); i++) {
                StudyGroupClassBean gc = (StudyGroupClassBean) groupClasses.get(i);
                if (!gc.getStatus().equals(Status.DELETED)) {
                    gc.setStatus(Status.AUTO_DELETED);
                    gc.setUpdater(ub);
                    gc.setUpdatedDate(new Date());
                    sgcdao.update(gc);
                }
            }
            // remove all event definitions and event
            EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
            StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
            for (int i = 0; i < definitions.size(); i++) {
                StudyEventDefinitionBean definition = (StudyEventDefinitionBean) definitions.get(i);
                if (!definition.getStatus().equals(Status.DELETED)) {
                    definition.setStatus(Status.AUTO_DELETED);
                    definition.setUpdater(ub);
                    definition.setUpdatedDate(new Date());
                    sefdao.update(definition);
                    ArrayList edcs = (ArrayList) edcdao.findAllByDefinition(definition.getId());
                    for (int j = 0; j < edcs.size(); j++) {
                        EventDefinitionCRFBean edc = (EventDefinitionCRFBean) edcs.get(j);
                        if (!edc.getStatus().equals(Status.DELETED)) {
                            edc.setStatus(Status.AUTO_DELETED);
                            edc.setUpdater(ub);
                            edc.setUpdatedDate(new Date());
                            edcdao.update(edc);
                        }
                    }
                    ArrayList events = (ArrayList) sedao.findAllByDefinition(definition.getId());
                    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
                    for (int j = 0; j < events.size(); j++) {
                        StudyEventBean event = (StudyEventBean) events.get(j);
                        if (!event.getStatus().equals(Status.DELETED)) {
                            event.setStatus(Status.AUTO_DELETED);
                            event.setUpdater(ub);
                            event.setUpdatedDate(new Date());
                            sedao.update(event);
                            ArrayList eventCRFs = ecdao.findAllByStudyEvent(event);
                            ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
                            for (int k = 0; k < eventCRFs.size(); k++) {
                                EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(k);
                                if (!eventCRF.getStatus().equals(Status.DELETED)) {
                                    eventCRF.setOldStatus(eventCRF.getStatus());
                                    eventCRF.setStatus(Status.AUTO_DELETED);
                                    eventCRF.setUpdater(ub);
                                    eventCRF.setUpdatedDate(new Date());
                                    ecdao.update(eventCRF);
                                    ArrayList itemDatas = iddao.findAllByEventCRFId(eventCRF.getId());
                                    for (int a = 0; a < itemDatas.size(); a++) {
                                        ItemDataBean item = (ItemDataBean) itemDatas.get(a);
                                        if (!item.getStatus().equals(Status.DELETED)) {
                                            item.setOldStatus(item.getStatus());
                                            item.setStatus(Status.AUTO_DELETED);
                                            item.setUpdater(ub);
                                            item.setUpdatedDate(new Date());
                                            iddao.update(item);
                                        }
                                    }
                                }
                            }
                        }
                    }
                }
            }
            // for definitions
            DatasetDAO datadao = new DatasetDAO(sm.getDataSource());
            ArrayList dataset = datadao.findAllByStudyId(study.getId());
            for (int i = 0; i < dataset.size(); i++) {
                DatasetBean data = (DatasetBean) dataset.get(i);
                if (!data.getStatus().equals(Status.DELETED)) {
                    data.setStatus(Status.AUTO_DELETED);
                    data.setUpdater(ub);
                    data.setUpdatedDate(new Date());
                    datadao.update(data);
                }
            }
            addPageMessage(resexception.getString("this_study_has_been_removed_succesfully"));
            forwardPage(Page.STUDY_LIST_SERVLET);
        }
    }
}

Example 12 with EventCRFDAO

use of org.akaza.openclinica.dao.submit.EventCRFDAO in project OpenClinica by OpenClinica.

the class RemoveSubjectServlet method processRequest.

@Override
public void processRequest() throws Exception {
    SubjectDAO sdao = new SubjectDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    int subjectId = fp.getInt("id");
    String action = fp.getString("action");
    if (subjectId == 0 || StringUtil.isBlank(action)) {
        addPageMessage(respage.getString("please_choose_a_subject_to_remove"));
        forwardPage(Page.SUBJECT_LIST_SERVLET);
    } else {
        SubjectBean subject = (SubjectBean) sdao.findByPK(subjectId);
        // find all study subjects
        StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
        ArrayList studySubs = ssdao.findAllBySubjectId(subjectId);
        // find study events
        StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
        ArrayList events = sedao.findAllBySubjectId(subjectId);
        if ("confirm".equalsIgnoreCase(action)) {
            request.setAttribute("subjectToRemove", subject);
            request.setAttribute("studySubs", studySubs);
            request.setAttribute("events", events);
            forwardPage(Page.REMOVE_SUBJECT);
        } else {
            logger.info("submit to remove the subject");
            // change all statuses to deleted
            subject.setStatus(Status.DELETED);
            subject.setUpdater(ub);
            subject.setUpdatedDate(new Date());
            sdao.update(subject);
            // remove subject references from study
            for (int i = 0; i < studySubs.size(); i++) {
                StudySubjectBean studySub = (StudySubjectBean) studySubs.get(i);
                if (!studySub.getStatus().equals(Status.DELETED)) {
                    studySub.setStatus(Status.AUTO_DELETED);
                    studySub.setUpdater(ub);
                    studySub.setUpdatedDate(new Date());
                    ssdao.update(studySub);
                }
            }
            EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
            for (int j = 0; j < events.size(); j++) {
                StudyEventBean event = (StudyEventBean) events.get(j);
                if (!event.getStatus().equals(Status.DELETED)) {
                    event.setStatus(Status.AUTO_DELETED);
                    event.setUpdater(ub);
                    event.setUpdatedDate(new Date());
                    sedao.update(event);
                    ArrayList eventCRFs = ecdao.findAllByStudyEvent(event);
                    ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
                    for (int k = 0; k < eventCRFs.size(); k++) {
                        EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(k);
                        if (!eventCRF.getStatus().equals(Status.DELETED)) {
                            eventCRF.setStatus(Status.AUTO_DELETED);
                            eventCRF.setUpdater(ub);
                            eventCRF.setUpdatedDate(new Date());
                            ecdao.update(eventCRF);
                            // remove all the item data
                            ArrayList itemDatas = iddao.findAllByEventCRFId(eventCRF.getId());
                            for (int a = 0; a < itemDatas.size(); a++) {
                                ItemDataBean item = (ItemDataBean) itemDatas.get(a);
                                if (!item.getStatus().equals(Status.DELETED)) {
                                    item.setStatus(Status.AUTO_DELETED);
                                    item.setUpdater(ub);
                                    item.setUpdatedDate(new Date());
                                    iddao.update(item);
                                }
                            }
                        }
                    }
                }
            }
            String emailBody = respage.getString("the_subject") + " " + subject.getUniqueIdentifier() + " " + respage.getString("has_been_removed_succesfully");
            addPageMessage(emailBody);
            //                sendEmail(emailBody);
            forwardPage(Page.SUBJECT_LIST_SERVLET);
        }
    }
}

Example 13 with EventCRFDAO

use of org.akaza.openclinica.dao.submit.EventCRFDAO in project OpenClinica by OpenClinica.

the class RestoreCRFServlet method processRequest.

@Override
public void processRequest() throws Exception {
    CRFDAO cdao = new CRFDAO(sm.getDataSource());
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    // checks which module the requests are from
    String module = fp.getString(MODULE);
    request.setAttribute(MODULE, module);
    int crfId = fp.getInt("id", true);
    String action = request.getParameter("action");
    if (crfId == 0) {
        addPageMessage(respage.getString("please_choose_a_CRF_to_restore"));
        forwardPage(Page.CRF_LIST_SERVLET);
    } else {
        CRFBean crf = (CRFBean) cdao.findByPK(crfId);
        ArrayList versions = cvdao.findAllByCRFId(crfId);
        crf.setVersions(versions);
        EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
        ArrayList edcs = (ArrayList) edcdao.findAllByCRF(crfId);
        SectionDAO secdao = new SectionDAO(sm.getDataSource());
        EventCRFDAO evdao = new EventCRFDAO(sm.getDataSource());
        ArrayList eventCRFs = evdao.findAllByCRF(crfId);
        if ("confirm".equalsIgnoreCase(action)) {
            request.setAttribute("crfToRestore", crf);
            request.setAttribute("eventCRFs", eventCRFs);
            forwardPage(Page.RESTORE_CRF);
        } else {
            logger.info("submit to restore the crf");
            crf.setStatus(Status.AVAILABLE);
            crf.setUpdater(ub);
            crf.setUpdatedDate(new Date());
            cdao.update(crf);
            for (int i = 0; i < versions.size(); i++) {
                CRFVersionBean version = (CRFVersionBean) versions.get(i);
                if (version.getStatus().equals(Status.AUTO_DELETED)) {
                    version.setStatus(Status.AVAILABLE);
                    version.setUpdater(ub);
                    version.setUpdatedDate(new Date());
                    cvdao.update(version);
                    ArrayList sections = secdao.findAllByCRFVersionId(version.getId());
                    for (int j = 0; j < sections.size(); j++) {
                        SectionBean section = (SectionBean) sections.get(j);
                        if (section.getStatus().equals(Status.AUTO_DELETED)) {
                            section.setStatus(Status.AVAILABLE);
                            section.setUpdater(ub);
                            section.setUpdatedDate(new Date());
                            secdao.update(section);
                        }
                    }
                }
            }
            for (int i = 0; i < edcs.size(); i++) {
                EventDefinitionCRFBean edc = (EventDefinitionCRFBean) edcs.get(i);
                if (edc.getStatus().equals(Status.AUTO_DELETED)) {
                    edc.setStatus(Status.AVAILABLE);
                    edc.setUpdater(ub);
                    edc.setUpdatedDate(new Date());
                    edcdao.update(edc);
                }
            }
            ItemDataDAO idao = new ItemDataDAO(sm.getDataSource());
            for (int i = 0; i < eventCRFs.size(); i++) {
                EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(i);
                if (eventCRF.getStatus().equals(Status.AUTO_DELETED)) {
                    eventCRF.setStatus(Status.AVAILABLE);
                    eventCRF.setUpdater(ub);
                    eventCRF.setUpdatedDate(new Date());
                    evdao.update(eventCRF);
                    ArrayList items = idao.findAllByEventCRFId(eventCRF.getId());
                    for (int j = 0; j < items.size(); j++) {
                        ItemDataBean item = (ItemDataBean) items.get(j);
                        if (item.getStatus().equals(Status.AUTO_DELETED)) {
                            item.setStatus(Status.AVAILABLE);
                            item.setUpdater(ub);
                            item.setUpdatedDate(new Date());
                            idao.update(item);
                        }
                    }
                }
            }
            addPageMessage(respage.getString("the_CRF") + crf.getName() + " " + respage.getString("has_been_restored_succesfully"));
            forwardPage(Page.CRF_LIST_SERVLET);
        }
    }
}

Example 14 with EventCRFDAO

use of org.akaza.openclinica.dao.submit.EventCRFDAO in project OpenClinica by OpenClinica.

the class RestoreCRFVersionServlet method processRequest.

@Override
public void processRequest() throws Exception {
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    // checks which module the requests are from
    String module = fp.getString(MODULE);
    request.setAttribute(MODULE, module);
    int versionId = fp.getInt("id", true);
    String action = fp.getString("action");
    if (versionId == 0) {
        addPageMessage(respage.getString("please_choose_a_CRF_version_to_restore"));
        forwardPage(Page.CRF_LIST_SERVLET);
    } else {
        if (StringUtil.isBlank(action)) {
            addPageMessage(respage.getString("no_action_specified"));
            forwardPage(Page.CRF_LIST_SERVLET);
            return;
        }
        CRFVersionBean version = (CRFVersionBean) cvdao.findByPK(versionId);
        SectionDAO secdao = new SectionDAO(sm.getDataSource());
        EventCRFDAO evdao = new EventCRFDAO(sm.getDataSource());
        // find all event crfs by version id
        ArrayList eventCRFs = evdao.findAllByCRFVersion(versionId);
        if ("confirm".equalsIgnoreCase(action)) {
            request.setAttribute("versionToRestore", version);
            request.setAttribute("eventCRFs", eventCRFs);
            forwardPage(Page.RESTORE_CRF_VERSION);
        } else {
            logger.info("submit to restore the crf version");
            // version
            version.setStatus(Status.AVAILABLE);
            version.setUpdater(ub);
            version.setUpdatedDate(new Date());
            cvdao.update(version);
            // all sections
            ArrayList sections = secdao.findAllByCRFVersionId(version.getId());
            for (int j = 0; j < sections.size(); j++) {
                SectionBean section = (SectionBean) sections.get(j);
                if (section.getStatus().equals(Status.AUTO_DELETED)) {
                    section.setStatus(Status.AVAILABLE);
                    section.setUpdater(ub);
                    section.setUpdatedDate(new Date());
                    secdao.update(section);
                }
            }
            // all item data related to event crfs
            ItemDataDAO idao = new ItemDataDAO(sm.getDataSource());
            for (int i = 0; i < eventCRFs.size(); i++) {
                EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(i);
                if (eventCRF.getStatus().equals(Status.AUTO_DELETED)) {
                    eventCRF.setStatus(Status.AVAILABLE);
                    eventCRF.setUpdater(ub);
                    eventCRF.setUpdatedDate(new Date());
                    evdao.update(eventCRF);
                    ArrayList items = idao.findAllByEventCRFId(eventCRF.getId());
                    for (int j = 0; j < items.size(); j++) {
                        ItemDataBean item = (ItemDataBean) items.get(j);
                        if (item.getStatus().equals(Status.AUTO_DELETED)) {
                            item.setStatus(Status.AVAILABLE);
                            item.setUpdater(ub);
                            item.setUpdatedDate(new Date());
                            idao.update(item);
                        }
                    }
                }
            }
            addPageMessage(respage.getString("the_CRF_version") + version.getName() + " " + respage.getString("has_been_restored_succesfully"));
            forwardPage(Page.CRF_LIST_SERVLET);
        }
    }
}

Example 15 with EventCRFDAO

use of org.akaza.openclinica.dao.submit.EventCRFDAO in project OpenClinica by OpenClinica.

the class CreateDatasetServlet method processRequest.

@Override
public void processRequest() throws Exception {
    FormProcessor fp = new FormProcessor(request);
    String action = fp.getString("action");
    if (StringUtil.isBlank(action)) {
        // step 1 -- instructions, and continue button
        session.setAttribute("newDataset", new DatasetBean());
        session.setAttribute("allItems", new ArrayList());
        session.setAttribute("crf", new CRFBean());
        session.setAttribute("allSelectedItems", new ArrayList());
        forwardPage(Page.CREATE_DATASET_1);
    } else {
        StudyBean studyWithEventDefs = currentStudy;
        if (currentStudy.getParentStudyId() > 0) {
            studyWithEventDefs = new StudyBean();
            studyWithEventDefs.setId(currentStudy.getParentStudyId());
        }
        if ("begin".equalsIgnoreCase(action)) {
            // step 2 -- select study events/crfs
            StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
            StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
            EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
            StudyBean studyWithEventDefinitions = currentStudy;
            if (currentStudy.getParentStudyId() > 0) {
                studyWithEventDefinitions = new StudyBean();
                studyWithEventDefinitions.setId(currentStudy.getParentStudyId());
            }
            ArrayList seds = seddao.findAllActiveByStudy(studyWithEventDefinitions);
            CRFDAO crfdao = new CRFDAO(sm.getDataSource());
            HashMap events = new LinkedHashMap();
            for (int i = 0; i < seds.size(); i++) {
                StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seds.get(i);
                ArrayList<CRFBean> crfs = (ArrayList<CRFBean>) crfdao.findAllActiveByDefinition(sed);
                if (currentStudy.getParentStudyId() > 0) {
                    // sift through these CRFs and see which ones are hidden
                    HideCRFManager hideCRFs = HideCRFManager.createHideCRFManager();
                    crfs = hideCRFs.removeHiddenCRFBeans(studyWithEventDefinitions, sed, crfs, sm.getDataSource());
                }
                if (!crfs.isEmpty()) {
                    events.put(sed, crfs);
                }
            }
            // datasets
            if (events.isEmpty()) {
                addPageMessage(respage.getString("not_have_study_definitions_assigned"));
                forwardPage(Page.CREATE_DATASET_1);
            } else {
                crfdao = new CRFDAO(sm.getDataSource());
                ItemDAO idao = new ItemDAO(sm.getDataSource());
                ArrayList sedItemIds = CreateDatasetServlet.allSedItemIdsInStudy(events, crfdao, idao);
                session.setAttribute("numberOfStudyItems", Integer.toString(sedItemIds.size()));
                request.setAttribute("eventlist", events);
                session.setAttribute(EVENTS_FOR_CREATE_DATASET, events);
                session.setAttribute("newDataset", new DatasetBean());
                session.setAttribute("allItems", new ArrayList());
                session.setAttribute("crf", new CRFBean());
                forwardPage(Page.CREATE_DATASET_2);
            }
        } else if ("beginsubmit".equalsIgnoreCase(action)) {
            String saveItems = fp.getString(SAVE_BUTTON);
            String saveContinue = fp.getString(SAVE_CONTINUE_BUTTON);
            DatasetBean db = (DatasetBean) session.getAttribute("newDataset");
            if (db == null) {
                db = new DatasetBean();
            }
            extractIdsFromForm(db);
            extractEventIds(db);
            session.setAttribute("newDataset", db);
            // +"");
            if (!StringUtil.isBlank(saveItems)) {
                request.setAttribute("eventlist", session.getAttribute(EVENTS_FOR_CREATE_DATASET));
                // BWP 3095>>
                String summary = respage.getString("you_have_selected") + " " + db.getItemIds().size() + " " + respage.getString("items_so_far");
                summary += genAttMsg(db);
                addPageMessage(summary);
                int crfId = fp.getInt("crfId");
                if (crfId > 0) {
                    // user choose a crf and select items
                    forwardPage(Page.CREATE_DATASET_2);
                } else {
                    ArrayList sgclasses = (ArrayList) session.getAttribute("allSelectedGroups");
                    if (sgclasses == null || sgclasses.size() == 0) {
                        sgclasses = setUpStudyGroups();
                    }
                    session.setAttribute("allSelectedGroups", sgclasses);
                    request.setAttribute("allSelectedGroups", sgclasses);
                    // TODO push out list of subject groups here???
                    // form submitted from "view selected item ' or
                    // attribute page, so
                    // forward back to "view selected item " page
                    forwardPage(Page.CREATE_DATASET_VIEW_SELECTED);
                }
            } else {
                if (db.getItemIds().size() == 0) {
                    request.setAttribute("eventlist", session.getAttribute(EVENTS_FOR_CREATE_DATASET));
                    addPageMessage(respage.getString("should_select_one_item_to_create_dataset"));
                    forwardPage(Page.CREATE_DATASET_2);
                } else {
                    String summary = respage.getString("you_have_selected") + " " + db.getItemIds().size() + " " + respage.getString("items_totally_for_this_dataset");
                    summary += genAttMsg(db);
                    addPageMessage(summary);
                    // 0 means using
                    fp.addPresetValue("firstmonth", 0);
                    // default month
                    fp.addPresetValue("firstyear", 1900);
                    fp.addPresetValue("lastmonth", 0);
                    fp.addPresetValue("lastyear", 2100);
                    setPresetValues(fp.getPresetValues());
                    logger.warn("found preset values while setting date: " + fp.getPresetValues().toString());
                    request.setAttribute(BEAN_MONTHS, getMonths());
                    request.setAttribute(BEAN_YEARS, getYears());
                    forwardPage(Page.CREATE_DATASET_3);
                }
            }
        } else if ("scopesubmit".equalsIgnoreCase(action)) {
            ArrayList months = getMonths();
            ArrayList years = getYears();
            int firstMonth = fp.getInt("firstmonth");
            int firstYear = fp.getInt("firstyear");
            int lastMonth = fp.getInt("lastmonth");
            int lastYear = fp.getInt("lastyear");
            if (fp.getInt("firstmonth") == 0) {
                // default value
                firstMonth = 1;
            }
            if (fp.getInt("lastmonth") == 0) {
                // default value
                lastMonth = 12;
            }
            errors = new HashMap();
            if (fp.getInt("firstmonth") > 0 && firstYear == 1900) {
                Validator.addError(errors, "firstmonth", restext.getString("if_specify_month_also_specify_year"));
            }
            if (fp.getInt("lastmonth") > 0 && lastYear == 2100) {
                Validator.addError(errors, "lastmonth", restext.getString("if_specify_month_also_specify_year"));
            }
            Date dateStart = getFirstDayOfMonth(firstYear, firstMonth);
            Date dateEnd = getLastDayOfMonth(lastYear, lastMonth);
            if (dateEnd.compareTo(dateStart) < 0) {
                Validator.addError(errors, "firstmonth", restext.getString("the_from_should_be_come_before_to"));
            }
            if (!errors.isEmpty()) {
                String[] fieldNames = { "firstmonth", "firstyear", "lastmonth", "lastyear" };
                fp.setCurrentIntValuesAsPreset(fieldNames);
                setInputMessages(errors);
                addPageMessage(respage.getString("errors_in_submission_see_below"));
                setPresetValues(fp.getPresetValues());
                request.setAttribute(BEAN_MONTHS, getMonths());
                request.setAttribute(BEAN_YEARS, getYears());
                forwardPage(Page.CREATE_DATASET_3);
            } else {
                DatasetBean dsb = (DatasetBean) session.getAttribute("newDataset");
                dsb.setDateStart(dateStart);
                dsb.setDateEnd(dateEnd);
                session.setAttribute("newDataset", dsb);
                if (fp.getString("submit").equals(resword.getString("continue_to_apply_filter"))) {
                    // FilterDAO fdao = new FilterDAO(sm.getDataSource());
                    // Collection filters = fdao.findAll();
                    // TODO make findAllByProject
                    // request.setAttribute("filters",filters);
                    EntityBeanTable table = getFilterTable();
                    session.setAttribute("partOfCreateDataset", new Integer(1));
                    // to be used in createFiltersThree servlet, tbh
                    request.setAttribute("table", table);
                    forwardPage(Page.APPLY_FILTER);
                } else {
                    request.setAttribute("statuses", Status.toActiveArrayList());
                    // YW, 2-20-2008 <<these attributes will show on the
                    // CREATE_DATASET_4
                    String temp = dsb.getODMMetaDataVersionOid();
                    request.setAttribute("mdvOID", temp != null && temp.length() > 0 ? temp : "v1.0.0");
                    temp = dsb.getODMMetaDataVersionName();
                    request.setAttribute("mdvName", temp != null && temp.length() > 0 ? temp : "MetaDataVersion_v1.0.0");
                    request.setAttribute("mdvPrevStudy", dsb.getODMPriorStudyOid());
                    request.setAttribute("mdvPrevOID", dsb.getODMPriorMetaDataVersionOid());
                    // YW >>
                    forwardPage(Page.CREATE_DATASET_4);
                }
            }
        } else if ("specifysubmit".equalsIgnoreCase(action)) {
            Validator v = new Validator(request);
            v.addValidation("dsName", Validator.NO_BLANKS);
            v.addValidation("dsName", Validator.NO_SEMI_COLONS_OR_COLONS);
            v.addValidation("dsDesc", Validator.NO_BLANKS);
            v.addValidation("dsStatus", Validator.IS_VALID_TERM, TermType.STATUS);
            v.addValidation("dsName", Validator.LENGTH_NUMERIC_COMPARISON, NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO, 255);
            v.addValidation("dsDesc", Validator.LENGTH_NUMERIC_COMPARISON, NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO, 2000);
            String mdvOID = fp.getString("mdvOID");
            String mdvName = fp.getString("mdvName");
            String mdvPrevStudy = fp.getString("mdvPrevStudy");
            if (mdvPrevStudy != null && mdvPrevStudy.length() > 0) {
                v.addValidation("mdvPrevOID", Validator.NO_BLANKS);
            }
            String mdvPrevOID = fp.getString("mdvPrevOID");
            errors = v.validate();
            String dsName = fp.getString("dsName");
            if (!StringUtil.isBlank(dsName)) {
                // YW, << 3-19-2008
                if (dsName.contains("/") || dsName.contains("\\")) {
                    v.addError(errors, "dsName", restext.getString("slash_not_allowed"));
                }
                // 2-20-2008, no check for editing dataset
                if (((DatasetBean) session.getAttribute("newDataset")).getId() <= 0) {
                    // YW >>
                    // logger.info("dsName" + fp.getString("dsName"));
                    DatasetDAO dsdao = new DatasetDAO(sm.getDataSource());
                    DatasetBean dsBean = (DatasetBean) dsdao.findByNameAndStudy(fp.getString("dsName").trim(), currentStudy);
                    if (dsBean.getId() > 0) {
                        Validator.addError(errors, "dsName", restext.getString("dataset_name_used_by_another_choose_unique"));
                    }
                }
            }
            if (!errors.isEmpty()) {
                String[] fieldNames = { "dsName", "dsDesc" };
                fp.setCurrentStringValuesAsPreset(fieldNames);
                fp.addPresetValue("dsStatusId", fp.getInt("dsStatus"));
                fp.addPresetValue("mdvOID", mdvOID);
                fp.addPresetValue("mdvName", mdvName);
                fp.addPresetValue("mdvPrevStudy", mdvPrevStudy);
                fp.addPresetValue("mdvPrevOID", mdvPrevOID);
                addPageMessage(respage.getString("errors_in_submission_see_below"));
                setInputMessages(errors);
                setPresetValues(fp.getPresetValues());
                request.setAttribute("statuses", Status.toActiveArrayList());
                forwardPage(Page.CREATE_DATASET_4);
            } else {
                session.setAttribute("mdvOID", mdvOID);
                session.setAttribute("mdvName", mdvName);
                session.setAttribute("mdvPrevStudy", mdvPrevStudy);
                session.setAttribute("mdvPrevOID", mdvPrevOID);
                if (mdvPrevOID != null && mdvPrevOID.length() > 0 && (mdvPrevStudy == null || mdvPrevStudy.length() <= 0)) {
                    mdvPrevStudy = currentStudy.getId() + "";
                }
                DatasetBean dsb = (DatasetBean) session.getAttribute("newDataset");
                dsb.setSQLStatement(dsb.generateQuery());
                String dbName = SQLInitServlet.getField("dataBase");
                if ("oracle".equals(dbName)) {
                    dsb.setSQLStatement(dsb.generateOracleQuery());
                }
                // TODO set up oracle syntax for the query, grab the
                // database
                // from the session manager and feed it to the dataset bean
                // possibly done, tbh 1/4/2005
                // TODO look for the filter here, re-create the sql
                // statement
                // and put it in here
                // possibly done need to test, tbh 1/7/2005
                FilterBean fb = (FilterBean) session.getAttribute("newFilter");
                if (fb != null) {
                    // FilterDAO fDAO = new FilterDAO(sm.getDataSource());
                    dsb.setSQLStatement(dsb.getSQLStatement() + " " + fb.getSQLStatement());
                }
                // dataset if dataset name has been changed.
                if (dsb.getId() > 0 && !dsb.getName().equals(fp.getString("dsName"))) {
                    dsb.setId(0);
                }
                // YW >>
                dsb.setODMMetaDataVersionName(mdvName);
                dsb.setODMMetaDataVersionOid(mdvOID);
                dsb.setODMPriorMetaDataVersionOid(mdvPrevOID);
                dsb.setODMPriorStudyOid(mdvPrevStudy);
                dsb.setName(fp.getString("dsName"));
                dsb.setDescription(fp.getString("dsDesc"));
                dsb.setStatus(Status.get(fp.getInt("dsStatus")));
                dsb.setDatasetItemStatus(DatasetItemStatus.get(fp.getInt("itemStatus")));
                session.removeAttribute("partOfCreateDataset");
                Date ddate = new SimpleDateFormat("MM/dd/yyyy").parse("01/01/1900");
                // done to remove the set up of going to get the filter, tbh
                // set up dataset here, grab primary key???!!!???
                // added by jxu
                request.setAttribute("defaultStart", local_df.parse(local_df.format(ddate)));
                request.setAttribute("defaultEnd", getLastDayOfMonth(2100, 12));
                session.setAttribute("newDataset", dsb);
                forwardPage(Page.CONFIRM_DATASET);
            }
        } else if ("confirmall".equalsIgnoreCase(action)) {
            String submit = fp.getString("btnSubmit");
            logger.info("reached confirm all");
            if (!resword.getString("confirm_and_save").equalsIgnoreCase(submit)) {
                // we're going back, so we should not destroy the
                // data we've created, tbh
                // session.removeAttribute("newDataset");
                // session.removeAttribute("newFilter");
                forwardPage(Page.CREATE_DATASET_4);
            } else {
                DatasetDAO ddao = new DatasetDAO(sm.getDataSource());
                DatasetBean dsb = (DatasetBean) session.getAttribute("newDataset");
                dsb.setStudyId(this.currentStudy.getId());
                dsb.setOwner(ub);
                // dsb.setOwnerId(ub.getId());
                //
                // at this point, dataset itemId will still be kept
                // uniquely.
                dsb = finalUpateDatasetBean(dsb);
                if (dsb.getId() == 0) {
                    // if the bean hasn't been created already that is...
                    logger.info("*** about to create the dataset bean");
                    dsb = (DatasetBean) ddao.create(dsb);
                    logger.info("created dataset bean: " + dsb.getId() + ", name: " + dsb.getName());
                    if (!dsb.isActive()) {
                        addPageMessage(restext.getString("problem_creating_dataset_try_again"));
                        forwardPage(Page.EXTRACT_DATASETS_MAIN);
                    }
                } else // YW, 2-20-2008 << for editing existing dataset
                if (dsb.getId() > 0) {
                    dsb = (DatasetBean) ddao.updateAll(dsb);
                    if (!dsb.isActive()) {
                        addPageMessage(restext.getString("problem_creating_dataset_try_again"));
                        forwardPage(Page.EXTRACT_DATASETS_MAIN);
                    }
                    dsb = (DatasetBean) ddao.updateGroupMap(dsb);
                    if (!dsb.isActive()) {
                        addPageMessage(restext.getString("problem_updating_subject_group_class_when_updating_dataset"));
                        forwardPage(Page.EXTRACT_DATASETS_MAIN);
                    }
                }
                // YW >>
                logger.info("setting data set id here");
                // may be easier to just set the dataset bean
                // back into the session?
                request.setAttribute("dataset", dsb);
                forwardPage(Page.EXPORT_DATASETS);
            }
        } else {
            // refine this bit to catch errors, hopefully
            addPageMessage(restext.getString("creating_new_dataset_cancelled"));
            forwardPage(Page.CREATE_DATASET_1);
        }
    }
}